FvH4_2g22580
BZIP Family

Light-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009887
Physical Location & Seq
Forward (+)
18512679 .. 18515563
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22580.t1

Sequence Viewer

Length: 1263 bp
ATGCATTCGGCTTTTCCGGCCGACGAAATCTCCGACATCTCCGACACCTTCTGGGCCTCCTCGCCGTCTCTCCCCATGAATCGGAGCGCCTCCGAGTGGGCCTTCGAGCAGTTTCTCGAGGAAGTCGTCTCCCCTCCTCCGCCGCCACCTCCACCGCCGCCCGCCGCCTCCGCCCACTCCTCGACGTCGAAGCGCGAGGAGGTCGATGAGGAGGTCGTCGAGATCAAGAAGCCCGATCGTCTTCAGCAGCAGCATCTCAATTGTCCGCCTCCGCCGCCGTCGGATCCGCCGTCCACGGCGCAGATTAACTCGGATCAGTACCGCGAGCTGCTCAAGAGCAAGCTCAATCTCGCGTGTGCTGCAGTCGCCCTCACTCGGCCTGTGGATTCTGATAATGTAGCGCAGACTCAATCTGTAGCGCCACAGCCTTCGCAATTGACCACTGGGCTTCATAAGAAAGGTGCTGGTTTGCCGCAAAGTGAGGCTGATACTAGCCCGCTTGGCATTCCAGCATTACCTGCTATTCAGAAGAAAGCTCAAACAACTAGTGGATCATCGAAAGATGACTCGGATGATGATGACCTGGAAGGGGACATTGAAATTACTGAGAATATGGATCCTGCTGATGTGAAGCGCGCAAGGAGGATGCTGTCGAATCGAGAGTCAGCTAGACGCTCTAGAAGAAGAAAACAAGCACAAATGACTGATCTTGAGACCCAGGCTGGCCAACTAAGAGTTGAAAACTCTGCACTCTTAAAGCAACTCACTGACGTGAATCACAAATATGATAATTCAGTTGTTGACAGACGAATATTAGAAGCCAATATTGAGACATTAAGAGCAAAGGTGAAAATGGCAGAAGAATCGGTTAAGAGGAAGACAGGGATCAACCCACTTCTTCTAGCCATGTCTAATGTAGTACCTAGAGCAAGCATGGCATCAATAGGCAATCCAATGGATGCATCCGCCAATTCTTCTGTGCCGATGCAACCAACCTCCAATCATCTCTTTCATCCAGTGGCTCCTAATATCAACACTCCACCACATCATCAGAGATTAGATACCACCTTCCCTGGAAACCACTCAATTCCTCTGGTTGGAAACCAACAGAGGGGCAGCAACACAACTGAAGTACCTTCAGTTCAGCACACAGCTAGCATAGATCACATGCACCAGCAGCAACTCCTGCCAGGAGCAAATCCGTGTGAAGCATTGCCGGGTTGGAACCCTCAGATTCCCCATCAAGTACCCAAGAATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_C

Protein Analysis

421

Amino Acids

45.82

Weight (kDa)

5.97

Isoelectric Point (pI)

66.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 210 - 263 9.4e-14 bZIP transcription factor
bZIP_2 PF07716 211 - 256 1.9e-08 Basic region leucine zipper
bZIP_C PF12498 278 - 392 4.4e-19 Basic leucine-zipper C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54620 AT3G54620 AT3G54620
fragaria_vesca FvH4_2g22580 FvH4_2g22580
malus_domestica MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica Prupe.8G232800_v2.0.a1
pyrus_communis pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis RchiOBHm_Chr6g0289641
rosa_laevigata RLG00000012286
rosa_multiflora Rmu_sc0005376.1_g000012
rosa_roxburghii Rroxscaffold_7G00177780
rosa_rugosa Rorug06G0205200
rosa_samantha Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana Rw6G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 526
AccII CGCG 4 cut(s) 195, 324, 353, 636
AclWI GGATC 7 cut(s) 278, 291, 321, 559, 611, 624, 893
AcoI YGGCCR 2 cut(s) 18, 724
AcuI CTGAAG 3 cut(s) 227, 1122, 1149
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 4 cut(s) 320, 921, 1134, 1248
AfiI CCNNNNNNNGG 6 cut(s) 81, 96, 375, 589, 1097, 1111
AgsI TTSAA 2 cut(s) 599, 740
AhlI ACTAGT 1 cut(s) 545
AjiI CACGTC 1 cut(s) 772
AjnI CCWGG 4 cut(s) 582, 717, 1072, 1189
AleI CACNNNNGTG 1 cut(s) 770
AluBI AGCT 5 cut(s) 328, 343, 536, 668, 1154
AluI AGCT 5 cut(s) 328, 343, 536, 668, 1154
Alw26I GTCTC 4 cut(s) 72, 133, 707, 824
AlwI GGATC 7 cut(s) 278, 291, 321, 559, 611, 624, 893
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 5 cut(s) 18, 54, 99, 377, 724
ApeKI GCWGC 6 cut(s) 247, 250, 328, 359, 1116, 1177
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
AspLEI GCGC 7 cut(s) 89, 195, 301, 403, 421, 636, 638
AspS9I GGNCC 2 cut(s) 54, 99
AsuC2I CCSGG 1 cut(s) 1218
AsuHPI GGTGA 1 cut(s) 859
AsuNHI GCTAGC 1 cut(s) 1154
AvaI CYCGRG 1 cut(s) 116
BaeI ACNNNNGTAYC 2 cut(s) 1116, 1149
BalI TGGCCA 1 cut(s) 726
BamHI GGATCC 2 cut(s) 283, 616
BbsI GAAGAC 2 cut(s) 233, 884
BbvI GCAGC 6 cut(s) 259, 262, 315, 346, 1128, 1189
BccI CCATC 1 cut(s) 1248
BceAI ACGGC 4 cut(s) 49, 262, 274, 312
BcgI CGANNNNNNTGC 2 cut(s) 846, 880
BciT130I CCWGG 4 cut(s) 584, 719, 1074, 1191
BcnI CCSGG 1 cut(s) 1218
BcoDI GTCTC 4 cut(s) 72, 133, 707, 824
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 7 cut(s) 492, 546, 669, 678, 902, 924, 1155
BfmI CTRYAG 2 cut(s) 360, 414
BfoI RGCGCY 2 cut(s) 90, 422
BfuAI ACCTGC 1 cut(s) 526
BglI GCCNNNNNGGC 1 cut(s) 501
Bme1390I CCNGG 5 cut(s) 584, 719, 1074, 1191, 1218
BmeT110I CYCGRG 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 772
BmgT120I GGNCC 2 cut(s) 54, 99
BmiI GGNNCC 4 cut(s) 285, 618, 1023, 1226
BmrFI CCNGG 5 cut(s) 584, 719, 1074, 1191, 1218
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 6 cut(s) 262, 636, 947, 949, 971, 975
BmtI GCTAGC 1 cut(s) 1158
BmuI ACTGGG 1 cut(s) 453
BpiI GAAGAC 2 cut(s) 233, 884
BpuEI CTTGAG 2 cut(s) 317, 731
BpuMI CCSGG 1 cut(s) 1218
BsaHI GRCGYC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 707
BsaJI CCNNGG 3 cut(s) 294, 717, 1072
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 6 cut(s) 81, 96, 375, 589, 1097, 1111
Bse1I ACTGG 2 cut(s) 448, 1016
Bse3DI GCAATG 1 cut(s) 1211
BseBI CCWGG 4 cut(s) 584, 719, 1074, 1191
BseDI CCNNGG 3 cut(s) 294, 717, 1072
BseGI GGATG 5 cut(s) 577, 651, 962, 964, 1012
BseLI CCNNNNNNNGG 6 cut(s) 81, 96, 375, 589, 1097, 1111
BseMI GCAATG 1 cut(s) 1211
BseMII CTCAG 2 cut(s) 597, 1244
BseNI ACTGG 2 cut(s) 448, 1016
BsePI GCGCGC 1 cut(s) 634
BseRI GAGGAG 5 cut(s) 49, 126, 169, 212, 224
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 6 cut(s) 259, 262, 315, 346, 1128, 1189
BsgI GTGCAG 1 cut(s) 732
Bsh1236I CGCG 4 cut(s) 195, 324, 353, 636
Bsh1285I CGRYCG 2 cut(s) 21, 238
BshFI GGCC 5 cut(s) 20, 56, 101, 379, 726
BsiEI CGRYCG 2 cut(s) 21, 238
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 17, 1217
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 6 cut(s) 81, 96, 375, 589, 1097, 1111
BsmAI GTCTC 4 cut(s) 72, 133, 707, 824
BsmBI CGTCTC 2 cut(s) 72, 133
BsmFI GGGAC 1 cut(s) 605
BsmI GAATGC 2 cut(s) 4, 504
BsnI GGCC 5 cut(s) 20, 56, 101, 379, 726
Bso31I GGTCTC 1 cut(s) 707
BsoBI CYCGRG 1 cut(s) 116
Bsp143I GATC 9 cut(s) 222, 235, 283, 313, 551, 616, 706, 885, 1162
BspANI GGCC 5 cut(s) 20, 56, 101, 379, 726
BspCNI CTCAG 2 cut(s) 598, 1243
BspFNI CGCG 4 cut(s) 195, 324, 353, 636
BspLI GGNNCC 4 cut(s) 285, 618, 1023, 1226
BspMAI CTGCAG 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 526
BspOI GCTAGC 1 cut(s) 1158
BspPI GGATC 7 cut(s) 278, 291, 321, 559, 611, 624, 893
BspTNI GGTCTC 1 cut(s) 707
BsrDI GCAATG 1 cut(s) 1211
BsrI ACTGG 2 cut(s) 448, 1016
BssECI CCNNGG 3 cut(s) 294, 717, 1072
BssHII GCGCGC 1 cut(s) 634
BssMI GATC 9 cut(s) 222, 235, 283, 313, 551, 616, 706, 885, 1162
BssNI GRCGYC 1 cut(s) 185
Bst2UI CCWGG 4 cut(s) 584, 719, 1074, 1191
BstACI GRCGYC 1 cut(s) 185
BstAPI GCANNNNNTGC 2 cut(s) 518, 1186
BstC8I GCNNGC 8 cut(s) 162, 326, 341, 497, 636, 724, 931, 1156
BstDEI CTNAG 3 cut(s) 606, 731, 1230
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 5 cut(s) 577, 651, 962, 964, 1012
BstFNI CGCG 4 cut(s) 195, 324, 353, 636
BstH2I RGCGCY 2 cut(s) 90, 422
BstHHI GCGC 7 cut(s) 89, 195, 301, 403, 421, 636, 638
BstKTI GATC 9 cut(s) 225, 238, 286, 316, 554, 619, 709, 888, 1165
BstMAI GTCTC 4 cut(s) 72, 133, 707, 824
BstMBI GATC 9 cut(s) 222, 235, 283, 313, 551, 616, 706, 885, 1162
BstMCI CGRYCG 2 cut(s) 21, 238
BstNI CCWGG 4 cut(s) 584, 719, 1074, 1191
BstNSI RCATGY 1 cut(s) 1171
BstSCI CCNGG 5 cut(s) 582, 717, 1072, 1189, 1216
BstSFI CTRYAG 2 cut(s) 360, 414
BstUI CGCG 4 cut(s) 195, 324, 353, 636
BstV1I GCAGC 6 cut(s) 259, 262, 315, 346, 1128, 1189
BstV2I GAAGAC 2 cut(s) 233, 884
BstX2I RGATCY 2 cut(s) 283, 616
BstYI RGATCY 2 cut(s) 283, 616
BstZI CGGCCG 1 cut(s) 18
BsuRI GGCC 5 cut(s) 20, 56, 101, 379, 726
BtgI CCRYGG 1 cut(s) 294
BtrI CACGTC 1 cut(s) 772
BtsCI GGATG 5 cut(s) 577, 651, 962, 964, 1012
BtsIMutI CAGTG 3 cut(s) 441, 765, 1023
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 8 cut(s) 162, 326, 341, 497, 636, 724, 931, 1156
CfoI GCGC 7 cut(s) 89, 195, 301, 403, 421, 636, 638
Cfr13I GGNCC 2 cut(s) 54, 99
CseI GACGC 1 cut(s) 681
Csp6I GTAC 4 cut(s) 319, 920, 1133, 1247
CviAII CATG 4 cut(s) 76, 907, 934, 1168
CviQI GTAC 4 cut(s) 319, 920, 1133, 1247
DdeI CTNAG 3 cut(s) 606, 731, 1230
DpnI GATC 9 cut(s) 224, 237, 285, 315, 553, 618, 708, 887, 1164
DpnII GATC 9 cut(s) 222, 235, 283, 313, 551, 616, 706, 885, 1162
EaeI YGGCCR 2 cut(s) 18, 724
EagI CGGCCG 1 cut(s) 18
EciI GGCGGA 6 cut(s) 129, 160, 255, 261, 276, 955
EclXI CGGCCG 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 707
Eco52I CGGCCG 1 cut(s) 18
Eco57I CTGAAG 3 cut(s) 227, 1122, 1149
Eco88I CYCGRG 1 cut(s) 116
EcoRII CCWGG 4 cut(s) 582, 717, 1072, 1189
EcoT22I ATGCAT 2 cut(s) 6, 964
Esp3I CGTCTC 2 cut(s) 72, 133
FaeI CATG 4 cut(s) 79, 910, 937, 1171
FaiI YATR 8 cut(s) 77, 453, 614, 786, 908, 935, 1160, 1169
FaqI GGGAC 1 cut(s) 605
FatI CATG 4 cut(s) 75, 906, 933, 1167
FauI CCCGC 2 cut(s) 169, 504
FokI GGATG 5 cut(s) 584, 658, 949, 971, 999
FspBI CTAG 7 cut(s) 492, 546, 669, 678, 902, 924, 1155
GlaI GCGC 7 cut(s) 88, 194, 300, 402, 420, 635, 637
HaeII RGCGCY 2 cut(s) 90, 422
HaeIII GGCC 5 cut(s) 20, 56, 101, 379, 726
HapII CCGG 2 cut(s) 17, 1217
HgaI GACGC 1 cut(s) 681
HhaI GCGC 7 cut(s) 89, 195, 301, 403, 421, 636, 638
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 4 cut(s) 79, 910, 937, 1171
Hin6I GCGC 7 cut(s) 87, 193, 299, 401, 419, 634, 636
HinP1I GCGC 7 cut(s) 87, 193, 299, 401, 419, 634, 636
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HinfI GANTC 9 cut(s) 79, 386, 406, 566, 655, 662, 775, 863, 1234
HpaII CCGG 2 cut(s) 17, 1217
HphI GGTGA 1 cut(s) 859
Hpy166II GTNNAC 2 cut(s) 294, 802
Hpy188III TCNNGA 7 cut(s) 116, 220, 226, 334, 659, 678, 710
Hpy8I GTNNAC 2 cut(s) 294, 802
Hpy99I CGWCG 5 cut(s) 26, 187, 190, 221, 283
HpyAV CCTTC 6 cut(s) 58, 112, 438, 581, 1078, 1146
HpyCH4IV ACGT 2 cut(s) 185, 771
HpyCH4V TGCA 6 cut(s) 4, 362, 749, 962, 988, 1171
HpyF3I CTNAG 3 cut(s) 606, 731, 1230
HpySE526I ACGT 2 cut(s) 185, 771
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 4 cut(s) 79, 910, 937, 1171
HspAI GCGC 7 cut(s) 87, 193, 299, 401, 419, 634, 636
Kzo9I GATC 9 cut(s) 222, 235, 283, 313, 551, 616, 706, 885, 1162
LmnI GCTCC 3 cut(s) 84, 1027, 1193
Lsp1109I GCAGC 6 cut(s) 259, 262, 315, 346, 1128, 1189
LweI GCATC 6 cut(s) 262, 636, 947, 949, 971, 975
MaeI CTAG 7 cut(s) 492, 546, 669, 678, 902, 924, 1155
MaeII ACGT 2 cut(s) 185, 771
MalI GATC 9 cut(s) 224, 237, 285, 315, 553, 618, 708, 887, 1164
MboI GATC 9 cut(s) 222, 235, 283, 313, 551, 616, 706, 885, 1162
MboII GAAGA 8 cut(s) 233, 541, 693, 696, 872, 889, 890, 966
MfeI CAATTG 2 cut(s) 259, 434
MflI RGATCY 2 cut(s) 283, 616
MlsI TGGCCA 1 cut(s) 726
MluCI AATT 6 cut(s) 259, 434, 600, 790, 970, 1086
MluNI TGGCCA 1 cut(s) 726
MlyI GAGTC 3 cut(s) 400, 560, 671
MmeI TCCRAC 5 cut(s) 57, 66, 261, 1078, 1202
Mox20I TGGCCA 1 cut(s) 726
Mph1103I ATGCAT 2 cut(s) 6, 964
MscI TGGCCA 1 cut(s) 726
MseI TTAA 4 cut(s) 306, 755, 836, 870
MslI CAYNNNNRTG 2 cut(s) 770, 783
Msp20I TGGCCA 1 cut(s) 726
MspI CCGG 2 cut(s) 17, 1217
MspR9I CCNGG 5 cut(s) 584, 719, 1074, 1191, 1218
MunI CAATTG 2 cut(s) 259, 434
Mva1269I GAATGC 2 cut(s) 4, 504
MvaI CCWGG 4 cut(s) 584, 719, 1074, 1191
MvnI CGCG 4 cut(s) 195, 324, 353, 636
NciI CCSGG 1 cut(s) 1218
NdeII GATC 9 cut(s) 222, 235, 283, 313, 551, 616, 706, 885, 1162
NheI GCTAGC 1 cut(s) 1154
NlaIII CATG 4 cut(s) 79, 910, 937, 1171
NlaIV GGNNCC 4 cut(s) 285, 618, 1023, 1226
NmeAIII GCCGAG 1 cut(s) 355
NsiI ATGCAT 2 cut(s) 6, 964
NspI RCATGY 1 cut(s) 1171
OliI CACNNNNGTG 1 cut(s) 770
PaeR7I CTCGAG 1 cut(s) 116
PauI GCGCGC 1 cut(s) 634
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 123, 287
PctI GAATGC 2 cut(s) 4, 504
PfeI GAWTC 6 cut(s) 79, 386, 655, 775, 863, 1234
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 3 cut(s) 400, 560, 670
PpsI GAGTC 3 cut(s) 400, 560, 670
Psp6I CCWGG 4 cut(s) 582, 717, 1072, 1189
PspGI CCWGG 4 cut(s) 582, 717, 1072, 1189
PspN4I GGNNCC 4 cut(s) 285, 618, 1023, 1226
PspPI GGNCC 2 cut(s) 54, 99
PsrI GAACNNNNNNTAC 2 cut(s) 1125, 1157
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 2 cut(s) 283, 616
PteI GCGCGC 1 cut(s) 634
PvuI CGATCG 1 cut(s) 238
RsaI GTAC 4 cut(s) 320, 921, 1134, 1248
RsaNI GTAC 4 cut(s) 319, 920, 1133, 1247
RseI CAYNNNNRTG 2 cut(s) 770, 783
SaqAI TTAA 4 cut(s) 306, 755, 836, 870
Sau3AI GATC 9 cut(s) 222, 235, 283, 313, 551, 616, 706, 885, 1162
Sau96I GGNCC 2 cut(s) 54, 99
SchI GAGTC 3 cut(s) 400, 560, 671
ScrFI CCNGG 5 cut(s) 584, 719, 1074, 1191, 1218
SfaNI GCATC 6 cut(s) 262, 636, 947, 949, 971, 975
SfcI CTRYAG 2 cut(s) 360, 414
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmiMI CAYNNNNRTG 2 cut(s) 770, 783
SmlI CTYRAG 3 cut(s) 116, 332, 710
SmoI CTYRAG 3 cut(s) 116, 332, 710
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 6 cut(s) 259, 434, 600, 790, 970, 1086
SspI AATATT 2 cut(s) 813, 826
SspMI CTAG 7 cut(s) 492, 546, 669, 678, 902, 924, 1155
StyD4I CCNGG 5 cut(s) 582, 717, 1072, 1189, 1216
TaiI ACGT 2 cut(s) 188, 774
TaqI TCGA 9 cut(s) 105, 117, 182, 188, 204, 219, 557, 653, 658
TasI AATT 6 cut(s) 259, 434, 600, 790, 970, 1086
TauI GCSGC 5 cut(s) 145, 160, 167, 277, 475
TfiI GAWTC 6 cut(s) 79, 386, 655, 775, 863, 1234
Tru1I TTAA 4 cut(s) 306, 755, 836, 870
Tru9I TTAA 4 cut(s) 306, 755, 836, 870
TscAI CASTG 3 cut(s) 448, 772, 1023
TseI GCWGC 6 cut(s) 247, 250, 328, 359, 1116, 1177
TspDTI ATGAA 3 cut(s) 92, 440, 1001
TspGWI ACGGA 1 cut(s) 1191
TspRI CASTG 3 cut(s) 448, 772, 1023
XbaI TCTAGA 1 cut(s) 677
XceI RCATGY 1 cut(s) 1171
XhoI CTCGAG 1 cut(s) 116
XspI CTAG 7 cut(s) 492, 546, 669, 678, 902, 924, 1155
ZraI GACGTC 1 cut(s) 186
Zsp2I ATGCAT 2 cut(s) 6, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.