Rmu_sc0005376.1_g000012
BZIP Family

Light-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005376.1
OG0009887
Physical Location & Seq
Forward (+)
37580 .. 39830
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005376.1_g000012.1.cds

Sequence Viewer

Length: 1347 bp
atgcattcggcgtttcaggccgacgaaatctccgacatcaacgacaccttctgggcctcctccacgtctctcccgatgaatcgcagcgattccgagtgggccttcgagcagtttctagaggaagtcgtctcggccccaccaccaccaccaccaccccccgccgccgatcaattgaccgtctcctccgtcgcctccgctcactcctcgacgtcgaagcgcgaggacgtcgatgaggaggtggtcgagatcaagaagcccgatcgtcatctcaattgtccgccgcctcctccgccgtccacggtgccgattaattcggatcagtaccaacgcgagctgctcaagagcaagctcgatctcgcgtgtgctgcagtcgctctcactcgggcttcgtctttgaagcctgtgggttctggtaatgtagcgcagactcaatctatattgccacagccttcgcaagtgacctctgcagttcataataaagctgcgggttatggtttgccacaaagtgaggctgatactagcccgcttggcattccggctttacctgctattcagaaaaaagctcagacaaccagtggatcgtcgaaagatgactcggatgatgatgacctggaaggcgacattgaaattacagagaatatggatcctgctgatgtgaagcgcgcgaggaggatgctgtcaaatcgggagtcagctagacgctctagaagaagaaaacaagcacaaatgactgatcttgagacccaggctggccaactaagagtcgaaaactctgcactgttaaaacaactcactgacgtgaatcacaaatatgataattcagtcgttgatagaagaatattagaagccaatattgagacattaagagcaaaggtgaaaatggcagaagaatctgtcaagaggaagacagggatcaacccgctacttctagccatgtctaatgtaccaaatgtacctagaacaagcatggcatcactaggcaatccaatggatacatctgccaatgcttctgtgccgatgcaaccaacctccaatcatctctttcatccggtggctcctagtatcaacactccaccacatcaccagagattagataccagcttccctggaaacccctcgattcctctagttggaaaccaacagagtactgttgggcaaccaattgtgaggggaagcaacacgactgaagtgccttcagttcagcacacagctagcatagatcacatgcaccagcagcagcagcagcaacagcaccagcagcaacttcagccaggagtgaatccgtgtgaagcattgccagtttggaaccctcagattccccatgcagtccccaagaataagaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_C

Protein Analysis

448

Amino Acids

48.78

Weight (kDa)

6.07

Isoelectric Point (pI)

62.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54620 AT3G54620 AT3G54620
fragaria_vesca FvH4_2g22580 FvH4_2g22580
malus_domestica MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica Prupe.8G232800_v2.0.a1
pyrus_communis pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis RchiOBHm_Chr6g0289641
rosa_laevigata RLG00000012286
rosa_multiflora Rmu_sc0005376.1_g000012
rosa_roxburghii Rroxscaffold_7G00177780
rosa_rugosa Rorug06G0205200
rosa_samantha Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana Rw6G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 212, 228
Acc36I ACCTGC 1 cut(s) 553
AccB1I GGYRCC 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 197
AccII CGCG 5 cut(s) 219, 330, 359, 663, 665
AciI CCGC 9 cut(s) 159, 162, 195, 278, 281, 290, 485, 524, 920
AclWI GGATC 5 cut(s) 324, 586, 638, 651, 920
AcoI YGGCCR 1 cut(s) 751
AcuI CTGAAG 3 cut(s) 1179, 1206, 1250
AcyI GRCGYC 2 cut(s) 209, 225
AdeI CACNNNGTG 1 cut(s) 506
AfaI GTAC 4 cut(s) 323, 945, 954, 1147
AfiI CCNNNNNNNGG 1 cut(s) 1130
AgsI TTSAA 2 cut(s) 397, 626
AjiI CACGTC 2 cut(s) 66, 799
AjnI CCWGG 4 cut(s) 609, 744, 1105, 1270
AleI CACNNNNGTG 1 cut(s) 797
AluBI AGCT 7 cut(s) 334, 349, 482, 563, 695, 1101, 1211
AluI AGCT 7 cut(s) 334, 349, 482, 563, 695, 1101, 1211
Alw26I GTCTC 5 cut(s) 72, 133, 184, 734, 851
AlwI GGATC 5 cut(s) 324, 586, 638, 651, 920
Ama87I CYCGRG 1 cut(s) 381
AoxI GGCC 5 cut(s) 18, 54, 99, 132, 751
ApeKI GCWGC 9 cut(s) 84, 334, 365, 482, 1234, 1237, 1240, 1243, 1258
ArsI GACNNNNNNTTYG 2 cut(s) 674, 706
AseI ATTAAT 1 cut(s) 309
AspLEI GCGC 4 cut(s) 219, 424, 663, 665
AspS9I GGNCC 3 cut(s) 54, 99, 133
AsuHPI GGTGA 2 cut(s) 886, 1073
AsuNHI GCTAGC 1 cut(s) 1211
AvaI CYCGRG 1 cut(s) 381
BalI TGGCCA 1 cut(s) 753
BamHI GGATCC 1 cut(s) 643
BanI GGYRCC 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 911
BbvI GCAGC 9 cut(s) 96, 321, 352, 469, 1246, 1249, 1252, 1255, 1270
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 6 cut(s) 655, 689, 755, 789, 1171, 1205
BciT130I CCWGG 4 cut(s) 611, 746, 1107, 1272
BciVI GTATCC 1 cut(s) 985
BcoDI GTCTC 5 cut(s) 72, 133, 184, 734, 851
BfmI CTRYAG 2 cut(s) 366, 465
BfuAI ACCTGC 1 cut(s) 553
BfuI GTATCC 1 cut(s) 985
BglI GCCNNNNNGGC 1 cut(s) 528
BmcAI AGTACT 1 cut(s) 1147
Bme1390I CCNGG 4 cut(s) 611, 746, 1107, 1272
BmeT110I CYCGRG 1 cut(s) 381
BmgBI CACGTC 2 cut(s) 66, 799
BmgT120I GGNCC 3 cut(s) 54, 99, 133
BmiI GGNNCC 5 cut(s) 135, 303, 645, 1056, 1307
BmrFI CCNGG 4 cut(s) 611, 746, 1107, 1272
BmsI GCATC 3 cut(s) 663, 980, 1008
BmtI GCTAGC 1 cut(s) 1215
BpiI GAAGAC 1 cut(s) 911
BpuEI CTTGAG 2 cut(s) 323, 758
BsaBI GATNNNNATC 1 cut(s) 264
BsaHI GRCGYC 2 cut(s) 209, 225
BsaI GGTCTC 1 cut(s) 734
BsaJI CCNNGG 3 cut(s) 297, 744, 1105
BsaWI WCCGGW 1 cut(s) 1048
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 1 cut(s) 1130
Bse1I ACTGG 2 cut(s) 573, 1298
Bse3DI GCAATG 1 cut(s) 1292
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 4 cut(s) 611, 746, 1107, 1272
BseDI CCNNGG 3 cut(s) 297, 744, 1105
BseGI GGATG 3 cut(s) 604, 678, 1045
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 1130
BseMI GCAATG 1 cut(s) 1292
BseMII CTCAG 2 cut(s) 578, 1325
BseNI ACTGG 2 cut(s) 573, 1298
BsePI GCGCGC 1 cut(s) 661
BseRI GAGGAG 6 cut(s) 49, 172, 193, 248, 276, 682
BseXI GCAGC 9 cut(s) 96, 321, 352, 469, 1246, 1249, 1252, 1255, 1270
BsgI GTGCAG 1 cut(s) 759
Bsh1236I CGCG 5 cut(s) 219, 330, 359, 663, 665
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 5 cut(s) 20, 56, 101, 134, 753
BshNI GGYRCC 1 cut(s) 301
BsiEI CGRYCG 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 2 cut(s) 536, 1049
BslFI GGGAC 1 cut(s) 1313
BslI CCNNNNNNNGG 1 cut(s) 1130
BsmAI GTCTC 5 cut(s) 72, 133, 184, 734, 851
BsmBI CGTCTC 3 cut(s) 72, 133, 184
BsmFI GGGAC 1 cut(s) 1313
BsmI GAATGC 2 cut(s) 4, 531
BsnI GGCC 5 cut(s) 20, 56, 101, 134, 753
Bso31I GGTCTC 1 cut(s) 734
BsoBI CYCGRG 1 cut(s) 381
BspACI CCGC 9 cut(s) 159, 162, 195, 278, 281, 290, 485, 524, 920
BspANI GGCC 5 cut(s) 20, 56, 101, 134, 753
BspCNI CTCAG 2 cut(s) 577, 1324
BspFNI CGCG 5 cut(s) 219, 330, 359, 663, 665
BspLI GGNNCC 5 cut(s) 135, 303, 645, 1056, 1307
BspMAI CTGCAG 2 cut(s) 370, 469
BspMI ACCTGC 1 cut(s) 553
BspOI GCTAGC 1 cut(s) 1215
BspPI GGATC 5 cut(s) 324, 586, 638, 651, 920
BspT107I GGYRCC 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 734
BsrBI CCGCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 1292
BsrI ACTGG 2 cut(s) 573, 1298
BssECI CCNNGG 3 cut(s) 297, 744, 1105
BssHII GCGCGC 1 cut(s) 661
BssNI GRCGYC 2 cut(s) 209, 225
Bst2UI CCWGG 4 cut(s) 611, 746, 1107, 1272
Bst4CI ACNGT 4 cut(s) 178, 301, 780, 1150
BstACI GRCGYC 2 cut(s) 209, 225
BstC8I GCNNGC 6 cut(s) 332, 347, 524, 663, 751, 1213
BstDEI CTNAG 3 cut(s) 564, 758, 1311
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 3 cut(s) 604, 678, 1045
BstFNI CGCG 5 cut(s) 219, 330, 359, 663, 665
BstHHI GCGC 4 cut(s) 219, 424, 663, 665
BstMAI GTCTC 5 cut(s) 72, 133, 184, 734, 851
BstMCI CGRYCG 1 cut(s) 262
BstNI CCWGG 4 cut(s) 611, 746, 1107, 1272
BstNSI RCATGY 1 cut(s) 1228
BstSCI CCNGG 4 cut(s) 609, 744, 1105, 1270
BstSFI CTRYAG 2 cut(s) 366, 465
BstUI CGCG 5 cut(s) 219, 330, 359, 663, 665
BstV1I GCAGC 9 cut(s) 96, 321, 352, 469, 1246, 1249, 1252, 1255, 1270
BstV2I GAAGAC 1 cut(s) 911
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuI GTATCC 1 cut(s) 985
BsuRI GGCC 5 cut(s) 20, 56, 101, 134, 753
BtgI CCRYGG 1 cut(s) 297
BtrI CACGTC 2 cut(s) 66, 799
BtsCI GGATG 3 cut(s) 604, 678, 1045
BtsIMutI CAGTG 3 cut(s) 580, 776, 792
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 6 cut(s) 332, 347, 524, 663, 751, 1213
CfoI GCGC 4 cut(s) 219, 424, 663, 665
Cfr13I GGNCC 3 cut(s) 54, 99, 133
CseI GACGC 1 cut(s) 708
Csp6I GTAC 4 cut(s) 322, 944, 953, 1146
CviAII CATG 4 cut(s) 934, 967, 1225, 1322
CviQI GTAC 4 cut(s) 322, 944, 953, 1146
DdeI CTNAG 3 cut(s) 564, 758, 1311
DraIII CACNNNGTG 1 cut(s) 506
EaeI YGGCCR 1 cut(s) 751
EciI GGCGGA 2 cut(s) 267, 279
Eco31I GGTCTC 1 cut(s) 734
Eco57I CTGAAG 3 cut(s) 1179, 1206, 1250
Eco88I CYCGRG 1 cut(s) 381
EcoRII CCWGG 4 cut(s) 609, 744, 1105, 1270
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 3 cut(s) 72, 133, 184
FaeI CATG 4 cut(s) 937, 970, 1228, 1325
FaqI GGGAC 1 cut(s) 1313
FatI CATG 4 cut(s) 933, 966, 1224, 1321
FauI CCCGC 4 cut(s) 166, 478, 531, 927
FokI GGATG 3 cut(s) 611, 685, 1032
GlaI GCGC 4 cut(s) 218, 423, 662, 664
HaeIII GGCC 5 cut(s) 20, 56, 101, 134, 753
HapII CCGG 2 cut(s) 536, 1049
HgaI GACGC 1 cut(s) 708
HhaI GCGC 4 cut(s) 219, 424, 663, 665
Hin1I GRCGYC 2 cut(s) 209, 225
Hin1II CATG 4 cut(s) 937, 970, 1228, 1325
Hin6I GCGC 4 cut(s) 217, 422, 661, 663
HinP1I GCGC 4 cut(s) 217, 422, 661, 663
HpaII CCGG 2 cut(s) 536, 1049
HphI GGTGA 2 cut(s) 886, 1073
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 7 cut(s) 34, 94, 316, 555, 567, 598, 1314
Hpy188III TCNNGA 9 cut(s) 73, 116, 244, 250, 340, 686, 705, 737, 898
Hpy8I GTNNAC 1 cut(s) 297
Hpy99I CGWCG 6 cut(s) 26, 191, 211, 214, 230, 586
HpyAV CCTTC 5 cut(s) 58, 112, 459, 608, 1203
HpyCH4III ACNGT 4 cut(s) 178, 301, 780, 1150
HpyCH4IV ACGT 4 cut(s) 65, 209, 225, 798
HpyCH4V TGCA 7 cut(s) 4, 368, 467, 776, 1021, 1228, 1325
HpyF3I CTNAG 3 cut(s) 564, 758, 1311
HpySE526I ACGT 4 cut(s) 65, 209, 225, 798
Hsp92I GRCGYC 2 cut(s) 209, 225
Hsp92II CATG 4 cut(s) 937, 970, 1228, 1325
HspAI GCGC 4 cut(s) 217, 422, 661, 663
LmnI GCTCC 1 cut(s) 1060
Lsp1109I GCAGC 9 cut(s) 96, 321, 352, 469, 1246, 1249, 1252, 1255, 1270
LweI GCATC 3 cut(s) 663, 980, 1008
MaeII ACGT 4 cut(s) 65, 209, 225, 798
MaeIII GTNAC 1 cut(s) 457
MbiI CCGCTC 1 cut(s) 197
MboII GAAGA 5 cut(s) 720, 723, 846, 899, 916
MfeI CAATTG 3 cut(s) 170, 271, 1161
MflI RGATCY 1 cut(s) 643
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 6 cut(s) 170, 271, 310, 627, 817, 1161
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 4 cut(s) 421, 587, 698, 771
MmeI TCCRAC 2 cut(s) 57, 1111
Mox20I TGGCCA 1 cut(s) 753
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 753
MseI TTAA 3 cut(s) 309, 782, 863
MslI CAYNNNNRTG 2 cut(s) 797, 810
Msp20I TGGCCA 1 cut(s) 753
MspI CCGG 2 cut(s) 536, 1049
MspR9I CCNGG 4 cut(s) 611, 746, 1107, 1272
MunI CAATTG 3 cut(s) 170, 271, 1161
Mva1269I GAATGC 2 cut(s) 4, 531
MvaI CCWGG 4 cut(s) 611, 746, 1107, 1272
MvnI CGCG 5 cut(s) 219, 330, 359, 663, 665
NheI GCTAGC 1 cut(s) 1211
NlaIII CATG 4 cut(s) 937, 970, 1228, 1325
NlaIV GGNNCC 5 cut(s) 135, 303, 645, 1056, 1307
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 457
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 1228
OliI CACNNNNGTG 1 cut(s) 797
PauI GCGCGC 1 cut(s) 661
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 71
PctI GAATGC 2 cut(s) 4, 531
PfeI GAWTC 7 cut(s) 79, 89, 802, 890, 1120, 1279, 1315
Ple19I CGATCG 1 cut(s) 262
PleI GAGTC 4 cut(s) 421, 587, 697, 770
PpsI GAGTC 4 cut(s) 421, 587, 697, 770
PshBI ATTAAT 1 cut(s) 309
Psp6I CCWGG 4 cut(s) 609, 744, 1105, 1270
PspGI CCWGG 4 cut(s) 609, 744, 1105, 1270
PspN4I GGNNCC 5 cut(s) 135, 303, 645, 1056, 1307
PspPI GGNCC 3 cut(s) 54, 99, 133
PstI CTGCAG 2 cut(s) 370, 469
PsuI RGATCY 1 cut(s) 643
PteI GCGCGC 1 cut(s) 661
PvuI CGATCG 1 cut(s) 262
RsaI GTAC 4 cut(s) 323, 945, 954, 1147
RsaNI GTAC 4 cut(s) 322, 944, 953, 1146
RseI CAYNNNNRTG 2 cut(s) 797, 810
SaqAI TTAA 3 cut(s) 309, 782, 863
Sau96I GGNCC 3 cut(s) 54, 99, 133
ScaI AGTACT 1 cut(s) 1147
SchI GAGTC 4 cut(s) 421, 587, 698, 771
ScrFI CCNGG 4 cut(s) 611, 746, 1107, 1272
SfaNI GCATC 3 cut(s) 663, 980, 1008
SfcI CTRYAG 2 cut(s) 366, 465
SmiMI CAYNNNNRTG 2 cut(s) 797, 810
SmlI CTYRAG 2 cut(s) 338, 737
SmoI CTYRAG 2 cut(s) 338, 737
Sse9I AATT 6 cut(s) 170, 271, 310, 627, 817, 1161
SsiI CCGC 9 cut(s) 159, 162, 195, 278, 281, 290, 485, 524, 920
SspI AATATT 2 cut(s) 840, 853
StyD4I CCNGG 4 cut(s) 609, 744, 1105, 1270
TaaI ACNGT 4 cut(s) 178, 301, 780, 1150
TaiI ACGT 4 cut(s) 68, 212, 228, 801
TaqI TCGA 9 cut(s) 105, 206, 212, 228, 243, 351, 584, 765, 1118
TasI AATT 6 cut(s) 170, 271, 310, 627, 817, 1161
TatI WGTACW 1 cut(s) 1145
TauI GCSGC 2 cut(s) 164, 283
TfiI GAWTC 7 cut(s) 79, 89, 802, 890, 1120, 1279, 1315
Tru1I TTAA 3 cut(s) 309, 782, 863
Tru9I TTAA 3 cut(s) 309, 782, 863
TscAI CASTG 3 cut(s) 580, 783, 799
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 9 cut(s) 84, 334, 365, 482, 1234, 1237, 1240, 1243, 1258
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 3 cut(s) 92, 461, 1034
TspGWI ACGGA 2 cut(s) 175, 1272
TspRI CASTG 3 cut(s) 580, 783, 799
VspI ATTAAT 1 cut(s) 309
XbaI TCTAGA 2 cut(s) 115, 704
XceI RCATGY 1 cut(s) 1228
ZraI GACGTC 2 cut(s) 210, 226
ZrmI AGTACT 1 cut(s) 1147
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.