Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008020

Physical Location & Seq

Genomic Coordinates Forward (+)

20354351 .. 20356363

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGTGGCTAAAGCCTTAGCACAGCTGATAACATGCATCATCTTATTCTGCCACGTTGTAGCTTCCGTAGAAGACCTCACCATACGCCAAGTCACGGCCGACAATCGGCGAATTCGCCCGAATCTTCTCGGGACTCACACAGAGAGTAAATTCCGGCTTTTCATGTCCGATTACGGCAAGAACTACTCCACGAGGGAGGAGTACATCCACCGCCTCGGAATATTTGCCAAAAACGTCCTTAAGGCCGCAGAGCACCAGATGATGGACCCCTCCGCCGTCCACGGAGTCACACAGTTCTCTGACCTCACGGAAGAGGAGTTCAAGCGGATGTACACTGGAGTAGCCGATGTTGGCGGCAGCCGTGGCGGTACGGTTGGAGCGGAGGCACCTATGGTTGAGGTTGATGGATTGCCTGAAGATTTTGACTGGAGGGAGAAGGGTGGAGTTACTGAGGTTAAGAATCAAGGTGCATGTGGATCGTGCTGGGCTTTTAGCACAACGGGAGCAGCTGAAGGAGCCCATTTCGTCTCCACCGGGAAGCTCCTCAGTCTTAGCGAACAACAACTTGTCGATTGTGATCAAGCGTGCGATCCAAAGGACAAGAAAGCATGCGACAATGGATGTGGCGGGGGACTGATGACAAATGCCTACGAGTATTTGATGGAGGCAGGAGGATTAGAAGAAGAAAGATCATATCCTTACACTGGTAAACGAGGCCATTGCAAGTTTGATCCTGAGAAGGTTGCGGTAAGAGTACTGAACTTCACGACTATACCACTGGATGAGAACCAAATCGCAGCAAACTTAGTTCGGCATGGTCCCTTAGCAGTGGGATTAAACGCCGTGTTCATGCAAACATATATAGGAGGAGTGTCATGTCCGCTTATATGCAGCAAGCGAAACGTTAACCACGGAGTACTTCTTGTTGGGTACGGATCAAAAGGGTTTTCGATCTTGCGGCTTAGTAATAAACCTTATTGGATTATCAAAAACTCGTGGGGGAAAAAGTGGGGAGAGAATGGATACTACAAGCTGTGTCGTGGGCACGATATATGTGGGATTAACTCGATGGTATCTGCAGTAGCCACCCAAGTTTCCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

367

Amino Acids

40.13

Weight (kDa)

6.79

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	51 - 107	1.8e-15	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	137 - 276	2.7e-42	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54940 AT3G54940
fragaria_vesca	FvH4_7g18550 FvH4_7g18550 FvH4_7g18550 FvH4_7g18581
malus_domestica	MD07G1169100.v1.1
prunus_persica	Prupe.2G207100_v2.0.a1
pyrus_communis	pycom07g16300
rosa_chinensis	RchiOBHm_Chr1g0362341 RchiOBHm_Chr3g0466551
rosa_laevigata	RLG00000032870
rosa_multiflora	Rmu_co8195178.1_g000001 Rmu_co8521771.1_g000001 Rmu_sc0003332.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054320 Rroxscaffold_4G00294240
rosa_rugosa	Rorug01G0297500
rosa_samantha	Rh1AG306400 Rh1BG269900 Rh1CG287400 Rh1DG300100 Rh3BG150800
rosa_wichuraiana	Rw1G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccBSI	CCGCTC	1 cut(s)	380
AclI	AACGTT	1 cut(s)	903
AclWI	GGATC	4 cut(s)	484, 584, 725, 943
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	111, 149
AcuI	CTGAAG	2 cut(s)	435, 531
AfaI	GTAC	6 cut(s)	203, 332, 370, 756, 918, 932
AfiI	CCNNNNNNNGG	4 cut(s)	94, 105, 262, 704
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	322
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	5 cut(s)	25, 62, 509, 541, 1033
AluI	AGCT	5 cut(s)	25, 62, 509, 541, 1033
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	4 cut(s)	484, 584, 725, 943
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	3 cut(s)	96, 243, 715
ApeKI	GCWGC	4 cut(s)	357, 506, 797, 891
ApoI	RAATTY	2 cut(s)	111, 149
AspS9I	GGNCC	2 cut(s)	265, 818
AsuC2I	CCSGG	1 cut(s)	535
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	265, 818
BaeGI	GKGCMC	1 cut(s)	1047
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	520
BauI	CACGAG	2 cut(s)	190, 994
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	4 cut(s)	369, 518, 809, 903
BccI	CCATC	4 cut(s)	256, 398, 655, 1063
BceAI	ACGGC	5 cut(s)	111, 190, 260, 345, 827
BcgI	CGANNNNNNTGC	4 cut(s)	459, 493, 702, 736
BciVI	GTATCC	1 cut(s)	1016
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	532
BfmI	CTRYAG	1 cut(s)	1077
BfrI	CTTAAG	1 cut(s)	239
BfuI	GTATCC	1 cut(s)	1016
BisI	GCNGC	7 cut(s)	246, 355, 358, 507, 798, 892, 959
BlsI	GCNGC	7 cut(s)	247, 356, 359, 508, 799, 893, 960
BmcAI	AGTACT	2 cut(s)	756, 918
Bme1390I	CCNGG	1 cut(s)	535
Bme18I	GGWCC	2 cut(s)	265, 818
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	265, 818
BmiI	GGNNCC	4 cut(s)	267, 387, 517, 820
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	2 cut(s)	357, 448
Bpu10I	CCTNAGC	2 cut(s)	16, 823
BpuMI	CCSGG	1 cut(s)	535
BsaBI	GATNNNNATC	1 cut(s)	576
BsaJI	CCNNGG	4 cut(s)	214, 280, 361, 910
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 105, 262, 704
Bse1I	ACTGG	4 cut(s)	340, 431, 709, 783
Bse3DI	GCAATG	1 cut(s)	718
Bse8I	GATNNNNATC	1 cut(s)	576
BseDI	CCNNGG	4 cut(s)	214, 280, 361, 910
BseGI	GGATG	4 cut(s)	204, 333, 626, 787
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	4 cut(s)	94, 105, 262, 704
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	3 cut(s)	441, 559, 726
BseNI	ACTGG	4 cut(s)	340, 431, 709, 783
BseRI	GAGGAG	4 cut(s)	212, 329, 533, 882
BseSI	GKGCMC	1 cut(s)	1047
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	369, 518, 809, 903
BseYI	CCCAGC	1 cut(s)	483
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	98, 245, 717
BshNI	GGYRCC	1 cut(s)	385
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	154, 534
BslFI	GGGAC	3 cut(s)	145, 645, 804
BslI	CCNNNNNNNGG	4 cut(s)	94, 105, 262, 704
BsmAI	GTCTC	1 cut(s)	532
BsmBI	CGTCTC	1 cut(s)	532
BsmFI	GGGAC	3 cut(s)	145, 645, 804
BsnI	GGCC	3 cut(s)	98, 245, 717
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	255, 520, 1047
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	7 cut(s)	476, 577, 589, 689, 730, 935, 951
BspANI	GGCC	3 cut(s)	98, 245, 717
BspCNI	CTCAG	3 cut(s)	442, 558, 727
BspLI	GGNNCC	4 cut(s)	267, 387, 517, 820
BspMAI	CTGCAG	1 cut(s)	1081
BspPI	GGATC	4 cut(s)	484, 584, 725, 943
BspT107I	GGYRCC	1 cut(s)	385
BspTI	CTTAAG	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	718
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	4 cut(s)	340, 431, 709, 783
BssECI	CCNNGG	4 cut(s)	214, 280, 361, 910
BssMI	GATC	7 cut(s)	476, 577, 589, 689, 730, 935, 951
BssSI	CACGAG	2 cut(s)	190, 994
Bst2BI	CACGAG	2 cut(s)	190, 994
Bst4CI	ACNGT	2 cut(s)	294, 373
Bst6I	CTCTTC	1 cut(s)	306
BstAFI	CTTAAG	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	330
BstC8I	GCNNGC	3 cut(s)	586, 610, 896
BstDEI	CTNAG	8 cut(s)	16, 450, 545, 551, 735, 805, 823, 962
BstDSI	CCRYGG	3 cut(s)	280, 361, 910
BstF5I	GGATG	4 cut(s)	204, 333, 626, 787
BstKTI	GATC	7 cut(s)	479, 580, 592, 692, 733, 938, 954
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	7 cut(s)	476, 577, 589, 689, 730, 935, 951
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 515
BstNSI	RCATGY	3 cut(s)	36, 474, 612
BstSCI	CCNGG	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	1077
BstSLI	GKGCMC	1 cut(s)	1047
BstV1I	GCAGC	4 cut(s)	369, 518, 809, 903
BstV2I	GAAGAC	1 cut(s)	78
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	1016
BsuRI	GGCC	3 cut(s)	98, 245, 717
BtgI	CCRYGG	3 cut(s)	280, 361, 910
BtsCI	GGATG	4 cut(s)	204, 333, 626, 787
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	4 cut(s)	333, 702, 776, 834
Cac8I	GCNNGC	3 cut(s)	586, 610, 896
Cfr13I	GGNCC	2 cut(s)	265, 818
Csp6I	GTAC	6 cut(s)	202, 331, 369, 755, 917, 931
CspCI	CAANNNNNGTGG	2 cut(s)	604, 639
CviAII	CATG	7 cut(s)	33, 163, 471, 609, 815, 850, 876
CviQI	GTAC	6 cut(s)	202, 331, 369, 755, 917, 931
DdeI	CTNAG	8 cut(s)	16, 450, 545, 551, 735, 805, 823, 962
DpnI	GATC	7 cut(s)	478, 579, 591, 691, 732, 937, 953
DpnII	GATC	7 cut(s)	476, 577, 589, 689, 730, 935, 951
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
EciI	GGCGGA	1 cut(s)	262
EclXI	CGGCCG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	520
Eco47I	GGWCC	2 cut(s)	265, 818
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	435, 531
Eco88I	CYCGRG	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	532
FaeI	CATG	7 cut(s)	36, 166, 474, 612, 818, 853, 879
FaqI	GGGAC	3 cut(s)	145, 645, 804
FatI	CATG	7 cut(s)	32, 162, 470, 608, 814, 849, 875
FauI	CCCGC	1 cut(s)	620
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	7 cut(s)	246, 355, 358, 507, 798, 892, 959
FokI	GGATG	4 cut(s)	191, 340, 633, 794
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	7 cut(s)	246, 355, 358, 507, 798, 892, 959
GluI	GCNGC	7 cut(s)	246, 355, 358, 507, 798, 892, 959
GsaI	CCCAGC	1 cut(s)	487
GsuI	CTGGAG	2 cut(s)	357, 448
HaeIII	GGCC	3 cut(s)	98, 245, 717
HapII	CCGG	2 cut(s)	154, 534
Hin1II	CATG	7 cut(s)	36, 166, 474, 612, 818, 853, 879
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HinfI	GANTC	4 cut(s)	121, 133, 285, 460
HpaI	GTTAAC	1 cut(s)	907
HpaII	CCGG	2 cut(s)	154, 534
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	4 cut(s)	280, 333, 710, 907
Hpy188I	TCNGA	3 cut(s)	169, 218, 301
Hpy188III	TCNNGA	3 cut(s)	130, 734, 766
Hpy8I	GTNNAC	4 cut(s)	280, 333, 710, 907
HpyAV	CCTTC	3 cut(s)	430, 506, 733
HpyCH4III	ACNGT	2 cut(s)	294, 373
HpyCH4IV	ACGT	3 cut(s)	54, 234, 903
HpyCH4V	TGCA	6 cut(s)	36, 470, 723, 853, 891, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 515
HpyF3I	CTNAG	8 cut(s)	16, 450, 545, 551, 735, 805, 823, 962
HpySE526I	ACGT	3 cut(s)	54, 234, 903
Hsp92II	CATG	7 cut(s)	36, 166, 474, 612, 818, 853, 879
Ksp22I	TGATCA	1 cut(s)	577
KspAI	GTTAAC	1 cut(s)	907
Kzo9I	GATC	7 cut(s)	476, 577, 589, 689, 730, 935, 951
LmnI	GCTCC	4 cut(s)	377, 503, 515, 546
Lsp1109I	GCAGC	4 cut(s)	369, 518, 809, 903
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	3 cut(s)	54, 234, 903
MaeIII	GTNAC	3 cut(s)	91, 286, 445
MalI	GATC	7 cut(s)	478, 579, 591, 691, 732, 937, 953
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	7 cut(s)	476, 577, 589, 689, 730, 935, 951
MboII	GAAGA	6 cut(s)	83, 116, 323, 428, 692, 695
MhlI	GDGCHC	3 cut(s)	255, 520, 1047
MluCI	AATT	2 cut(s)	111, 149
MlyI	GAGTC	2 cut(s)	127, 294
MmeI	TCCRAC	1 cut(s)	355
Mph1103I	ATGCAT	1 cut(s)	38
MseI	TTAA	5 cut(s)	240, 456, 836, 906, 1062
MspA1I	CMGCKG	2 cut(s)	25, 509
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	2 cut(s)	154, 534
MspR9I	CCNGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	2 cut(s)	363, 515
NciI	CCSGG	1 cut(s)	535
NdeII	GATC	7 cut(s)	476, 577, 589, 689, 730, 935, 951
NlaIII	CATG	7 cut(s)	36, 166, 474, 612, 818, 853, 879
NlaIV	GGNNCC	4 cut(s)	267, 387, 517, 820
NmuCI	GTSAC	2 cut(s)	91, 286
NsiI	ATGCAT	1 cut(s)	38
NspI	RCATGY	3 cut(s)	36, 474, 612
PaeI	GCATGC	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	121, 460
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	7 cut(s)	247, 356, 359, 508, 799, 893, 960
PleI	GAGTC	2 cut(s)	127, 293
PpsI	GAGTC	2 cut(s)	127, 293
Psp1406I	AACGTT	1 cut(s)	903
PspFI	CCCAGC	1 cut(s)	483
PspN4I	GGNNCC	4 cut(s)	267, 387, 517, 820
PspPI	GGNCC	2 cut(s)	265, 818
PstI	CTGCAG	1 cut(s)	1081
PvuII	CAGCTG	2 cut(s)	25, 509
RsaI	GTAC	6 cut(s)	203, 332, 370, 756, 918, 932
RsaNI	GTAC	6 cut(s)	202, 331, 369, 755, 917, 931
SaqAI	TTAA	5 cut(s)	240, 456, 836, 906, 1062
SatI	GCNGC	7 cut(s)	246, 355, 358, 507, 798, 892, 959
Sau3AI	GATC	7 cut(s)	476, 577, 589, 689, 730, 935, 951
Sau96I	GGNCC	2 cut(s)	265, 818
ScaI	AGTACT	2 cut(s)	756, 918
SchI	GAGTC	2 cut(s)	127, 294
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	3 cut(s)	255, 520, 1047
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	1077
SinI	GGWCC	2 cut(s)	265, 818
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SphI	GCATGC	1 cut(s)	612
Sse9I	AATT	2 cut(s)	111, 149
SspI	AATATT	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	533
TaaI	ACNGT	2 cut(s)	294, 373
TaiI	ACGT	3 cut(s)	57, 237, 906
TaqI	TCGA	3 cut(s)	570, 950, 1067
TasI	AATT	2 cut(s)	111, 149
TatI	WGTACW	4 cut(s)	201, 330, 754, 916
TauI	GCSGC	3 cut(s)	248, 357, 961
TfiI	GAWTC	2 cut(s)	121, 460
Tru1I	TTAA	5 cut(s)	240, 456, 836, 906, 1062
Tru9I	TTAA	5 cut(s)	240, 456, 836, 906, 1062
TscAI	CASTG	4 cut(s)	340, 709, 783, 834
TseFI	GTSAC	2 cut(s)	91, 286
TseI	GCWGC	4 cut(s)	357, 506, 797, 891
Tsp45I	GTSAC	2 cut(s)	91, 286
TspDTI	ATGAA	2 cut(s)	151, 838
TspGWI	ACGGA	5 cut(s)	55, 297, 323, 927, 948
TspRI	CASTG	4 cut(s)	340, 709, 783, 834
Van91I	CCANNNNNTGG	1 cut(s)	262
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	265, 818
XapI	RAATTY	2 cut(s)	111, 149
XceI	RCATGY	3 cut(s)	36, 474, 612
ZrmI	AGTACT	2 cut(s)	756, 918
Zsp2I	ATGCAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.