Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008020

Physical Location & Seq

Genomic Coordinates Forward (+)

18732045 .. 18733821

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCTGTAGTTGTACCTCCGACTCTTACCTGGGCGATGGGCGTTGTTGCAGTCTTAACCTGCGCACTCAGCACTCTCTCTTTAGCTCTCCATGACACCTCACAAGACCTAATCATACACCAAGTTACAGACAATCACCACTTTCTGCCGGGGACCGAGAGAAACTTCCAGATGTTCATCGAACAATACGGGAAGAAGTATTCTACCCGAAAGGAGTACATGCACCGCCTTGGGATTTTCGCCAAGAACATGATCAGGGCAGCCGAGCACCAAGTCCTCGATCCGACGGCTGTCCACGGAGTCACGCCCTTTTCAGACCTGTCTGAAGAAGAGTTCGAGCGGATGTACACCGGTATGATAGGTGTACCCCAAAACGGCGGTGTTTCTAATAGTGCTCCACCGGTTATGGACGTTGGTGATTTGCCTGAGAATTTTGACTGGAGAGACAAGGGAGCTGTTACCGAGGTCAAGACGCAGGGTGGTTGCGGGTCATGCTGGGCCTTTAGCACTACAGGATCAATTGAAGGAGCTCACTATATTGCAACAGGGAAGCTTCTTAATCTCAGCGAACAACAGCTTGTGGACTGCGATAGCACATGCGATCCAAAAGAGAAGGATGCATGCGACAGTGGTTGCGGCGGTGGCCTTATGACAAATGCCTACAAGTATCTAATTGAAGCAGGAGGGTTGGAGAAGGAGAATACATACCCTTACACTGGGAAACGGGGTGAATGTAAATTCGACCAGGACAAGGTTGCAGTAAGAGTTGCCAATTTTACCACTATCCCAATTGATGAGGACCAAATTGCAGCGAATTTAGTCCACCATGGTCCTCTTGCTATCGGGTTGAATGCTATGTTCATGCAAACTTACATTGGCGGTGTTTCGTGCCCCCTTATATGTTTCAAGAAATGGGTGAACCATGGTGTCTTACTTGTGGGGTATGGTGCCAAGGGCTACTCCATTCTCAGGCTTCGGAACAAGCCATATTGGATAATCAAGAACTCATGGGGGGAGCGATGGGGAGAACAAGGTTATTACCGTCTGTGCCGAGGCCATGCCATGTGCGGCATGAACTCAATGGTGTCTGCGGTTGTGACTAGTACGCGACCATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

373

Amino Acids

40.93

Weight (kDa)

6.18

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54940 AT3G54940
fragaria_vesca	FvH4_7g18550 FvH4_7g18550 FvH4_7g18550 FvH4_7g18581
malus_domestica	MD07G1169100.v1.1
prunus_persica	Prupe.2G207100_v2.0.a1
pyrus_communis	pycom07g16300
rosa_chinensis	RchiOBHm_Chr1g0362341 RchiOBHm_Chr3g0466551
rosa_laevigata	RLG00000032870
rosa_multiflora	Rmu_co8195178.1_g000001 Rmu_co8521771.1_g000001 Rmu_sc0003332.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054320 Rroxscaffold_4G00294240
rosa_rugosa	Rorug01G0297500
rosa_samantha	Rh1AG306400 Rh1BG269900 Rh1CG287400 Rh1DG300100 Rh3BG150800
rosa_wichuraiana	Rw1G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	947
AccBSI	CCGCTC	1 cut(s)	340
AccII	CGCG	1 cut(s)	1108
AciI	CCGC	9 cut(s)	226, 340, 378, 486, 636, 639, 879, 1068, 1091
AclWI	GGATC	3 cut(s)	275, 523, 596
AcsI	RAATTY	3 cut(s)	430, 737, 814
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	5 cut(s)	15, 218, 347, 366, 1105
AfiI	CCNNNNNNNGG	4 cut(s)	374, 716, 751, 969
AgeI	ACCGGT	2 cut(s)	350, 400
AgsI	TTSAA	4 cut(s)	524, 677, 850, 907
AhlI	ACTAGT	1 cut(s)	1100
AjnI	CCWGG	2 cut(s)	29, 744
AluBI	AGCT	5 cut(s)	86, 455, 530, 553, 577
AluI	AGCT	5 cut(s)	86, 455, 530, 553, 577
Alw21I	GWGCWC	3 cut(s)	270, 397, 532
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	3 cut(s)	275, 523, 596
AoxI	GGCC	3 cut(s)	498, 643, 1054
ApeKI	GCWGC	2 cut(s)	260, 809
ApoI	RAATTY	3 cut(s)	430, 737, 814
AsiGI	ACCGGT	2 cut(s)	350, 400
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	4 cut(s)	153, 498, 799, 830
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	4 cut(s)	128, 428, 740, 928
AvaII	GGWCC	3 cut(s)	153, 799, 830
BaeGI	GKGCMC	1 cut(s)	893
BanI	GGYRCC	1 cut(s)	947
BanII	GRGCYC	1 cut(s)	532
Bbv12I	GWGCWC	3 cut(s)	270, 397, 532
BbvI	GCAGC	2 cut(s)	272, 821
BccI	CCATC	2 cut(s)	31, 1014
BceAI	ACGGC	2 cut(s)	303, 391
BciT130I	CCWGG	2 cut(s)	31, 746
BclI	TGATCA	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	438
BcuI	ACTAGT	1 cut(s)	1100
BfaI	CTAG	1 cut(s)	1101
BfmI	CTRYAG	2 cut(s)	6, 510
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	4 cut(s)	261, 637, 810, 1069
BlsI	GCNGC	4 cut(s)	262, 638, 811, 1070
Bme1390I	CCNGG	3 cut(s)	31, 150, 746
Bme18I	GGWCC	3 cut(s)	153, 799, 830
BmgT120I	GGNCC	4 cut(s)	153, 498, 799, 830
BmiI	GGNNCC	2 cut(s)	154, 949
BmrFI	CCNGG	3 cut(s)	31, 150, 746
BmrI	ACTGGG	1 cut(s)	726
BmsI	GCATC	1 cut(s)	607
BmuI	ACTGGG	1 cut(s)	726
BoxI	GACNNNNGTC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	176
BsaJI	CCNNGG	9 cut(s)	30, 149, 229, 295, 462, 826, 922, 951, 1051
BsaWI	WCCGGW	2 cut(s)	350, 400
Bsc4I	CCNNNNNNNGG	4 cut(s)	374, 716, 751, 969
Bse118I	RCCGGY	2 cut(s)	350, 400
Bse1I	ACTGG	2 cut(s)	443, 721
Bse8I	GATNNNNATC	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	31, 746
BseDI	CCNNGG	9 cut(s)	30, 149, 229, 295, 462, 826, 922, 951, 1051
BseGI	GGATG	2 cut(s)	348, 622
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	4 cut(s)	374, 716, 751, 969
BseMII	CTCAG	4 cut(s)	82, 417, 577, 982
BseNI	ACTGG	2 cut(s)	443, 721
BseSI	GKGCMC	1 cut(s)	893
BseXI	GCAGC	2 cut(s)	272, 821
BseYI	CCCAGC	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	1108
BshFI	GGCC	3 cut(s)	500, 645, 1056
BshNI	GGYRCC	1 cut(s)	947
BshTI	ACCGGT	2 cut(s)	350, 400
BsiHKAI	GWGCWC	3 cut(s)	270, 397, 532
BsiSI	CCGG	3 cut(s)	149, 351, 401
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	4 cut(s)	374, 716, 751, 969
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	166
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	3 cut(s)	500, 645, 1056
Bsp1286I	GDGCHC	4 cut(s)	270, 397, 532, 893
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	252, 280, 515, 601
Bsp19I	CCATGG	2 cut(s)	826, 922
BspACI	CCGC	9 cut(s)	226, 340, 378, 486, 636, 639, 879, 1068, 1091
BspANI	GGCC	3 cut(s)	500, 645, 1056
BspCNI	CTCAG	4 cut(s)	81, 418, 576, 981
BspFNI	CGCG	1 cut(s)	1108
BspLI	GGNNCC	2 cut(s)	154, 949
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	3 cut(s)	275, 523, 596
BspT107I	GGYRCC	1 cut(s)	947
BsrBI	CCGCTC	1 cut(s)	340
BsrFI	RCCGGY	2 cut(s)	350, 400
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	443, 721
BssAI	RCCGGY	2 cut(s)	350, 400
BssECI	CCNNGG	9 cut(s)	30, 149, 229, 295, 462, 826, 922, 951, 1051
BssMI	GATC	4 cut(s)	252, 280, 515, 601
BssT1I	CCWWGG	4 cut(s)	229, 826, 922, 951
Bst2UI	CCWGG	2 cut(s)	31, 746
Bst4CI	ACNGT	2 cut(s)	629, 1043
Bst6I	CTCTTC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	4 cut(s)	68, 426, 563, 968
BstDSI	CCRYGG	3 cut(s)	295, 826, 922
BstF5I	GGATG	2 cut(s)	348, 622
BstFNI	CGCG	1 cut(s)	1108
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	4 cut(s)	255, 283, 518, 604
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	4 cut(s)	252, 280, 515, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 492, 642
BstNI	CCWGG	2 cut(s)	31, 746
BstNSI	RCATGY	3 cut(s)	223, 600, 624
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	3 cut(s)	29, 148, 744
BstSFI	CTRYAG	2 cut(s)	6, 510
BstSLI	GKGCMC	1 cut(s)	893
BstUI	CGCG	1 cut(s)	1108
BstV1I	GCAGC	2 cut(s)	272, 821
BsuRI	GGCC	3 cut(s)	500, 645, 1056
BtgI	CCRYGG	3 cut(s)	295, 826, 922
BtgZI	GCGATG	2 cut(s)	50, 1033
BtsCI	GGATG	2 cut(s)	348, 622
BtsIMutI	CAGTG	2 cut(s)	634, 714
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	622
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	2 cut(s)	350, 400
Cfr13I	GGNCC	4 cut(s)	153, 498, 799, 830
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	5 cut(s)	14, 217, 346, 365, 1104
CspAI	ACCGGT	2 cut(s)	350, 400
CviQI	GTAC	5 cut(s)	14, 217, 346, 365, 1104
DdeI	CTNAG	4 cut(s)	68, 426, 563, 968
DpnI	GATC	4 cut(s)	254, 282, 517, 603
DpnII	GATC	4 cut(s)	252, 280, 515, 601
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	530
Eco130I	CCWWGG	4 cut(s)	229, 826, 922, 951
Eco24I	GRGCYC	1 cut(s)	532
Eco47I	GGWCC	3 cut(s)	153, 799, 830
Eco53kI	GAGCTC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	29, 744
EcoT14I	CCWWGG	4 cut(s)	229, 826, 922, 951
EcoT22I	ATGCAT	1 cut(s)	622
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	4 cut(s)	229, 826, 922, 951
FaqI	GGGAC	1 cut(s)	166
FauI	CCCGC	1 cut(s)	479
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	261, 637, 810, 1069
FokI	GGATG	2 cut(s)	355, 629
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	4 cut(s)	261, 637, 810, 1069
FspBI	CTAG	1 cut(s)	1101
FspI	TGCGCA	1 cut(s)	64
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	4 cut(s)	261, 637, 810, 1069
GsaI	CCCAGC	1 cut(s)	499
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	3 cut(s)	500, 645, 1056
HapII	CCGG	3 cut(s)	149, 351, 401
HgaI	GACGC	1 cut(s)	481
HhaI	GCGC	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	2 cut(s)	22, 300
HpaII	CCGG	3 cut(s)	149, 351, 401
HphI	GGTGA	4 cut(s)	128, 428, 740, 928
Hpy166II	GTNNAC	6 cut(s)	295, 348, 365, 583, 823, 919
Hpy188I	TCNGA	5 cut(s)	21, 285, 316, 325, 978
Hpy188III	TCNNGA	4 cut(s)	169, 469, 907, 1000
Hpy8I	GTNNAC	6 cut(s)	295, 348, 365, 583, 823, 919
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	518, 607, 688
HpyCH4III	ACNGT	2 cut(s)	629, 1043
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	7 cut(s)	50, 223, 542, 620, 758, 809, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 492, 642
HpyF3I	CTNAG	4 cut(s)	68, 426, 563, 968
HpySE526I	ACGT	1 cut(s)	411
HspAI	GCGC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	4 cut(s)	252, 280, 515, 601
LmnI	GCTCC	4 cut(s)	400, 452, 527, 1015
Lsp1109I	GCAGC	2 cut(s)	272, 821
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	1 cut(s)	1101
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	4 cut(s)	124, 301, 457, 1096
MalI	GATC	4 cut(s)	254, 282, 517, 603
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	4 cut(s)	252, 280, 515, 601
MboII	GAAGA	3 cut(s)	205, 338, 341
MfeI	CAATTG	2 cut(s)	519, 789
MhlI	GDGCHC	4 cut(s)	270, 397, 532, 893
MluCI	AATT	8 cut(s)	430, 519, 672, 737, 772, 789, 804, 814
MlyI	GAGTC	2 cut(s)	16, 309
MmeI	TCCRAC	3 cut(s)	44, 308, 669
MnlI	CCTC	8 cut(s)	27, 109, 287, 457, 677, 790, 843, 1046
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	2 cut(s)	56, 558
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	3 cut(s)	149, 351, 401
MspR9I	CCNGG	3 cut(s)	31, 150, 746
MunI	CAATTG	2 cut(s)	519, 789
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	2 cut(s)	31, 746
MvnI	CGCG	1 cut(s)	1108
MwoI	GCNNNNNNNGC	3 cut(s)	69, 492, 642
NciI	CCSGG	1 cut(s)	150
NcoI	CCATGG	2 cut(s)	826, 922
NdeII	GATC	4 cut(s)	252, 280, 515, 601
NlaIV	GGNNCC	2 cut(s)	154, 949
NmeAIII	GCCGAG	2 cut(s)	289, 1076
NmuCI	GTSAC	2 cut(s)	301, 1096
NsbI	TGCGCA	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	3 cut(s)	223, 600, 624
PaeI	GCATGC	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	1112
PctI	GAATGC	1 cut(s)	856
PinAI	ACCGGT	2 cut(s)	350, 400
PkrI	GCNGC	4 cut(s)	262, 638, 811, 1070
PleI	GAGTC	2 cut(s)	16, 308
PpsI	GAGTC	2 cut(s)	16, 308
PshAI	GACNNNNGTC	1 cut(s)	290
Psp124BI	GAGCTC	1 cut(s)	532
Psp6I	CCWGG	2 cut(s)	29, 744
PspFI	CCCAGC	1 cut(s)	495
PspGI	CCWGG	2 cut(s)	29, 744
PspN4I	GGNNCC	2 cut(s)	154, 949
PspPI	GGNCC	4 cut(s)	153, 498, 799, 830
RsaI	GTAC	5 cut(s)	15, 218, 347, 366, 1105
RsaNI	GTAC	5 cut(s)	14, 217, 346, 365, 1104
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	532
SaqAI	TTAA	2 cut(s)	56, 558
SatI	GCNGC	4 cut(s)	261, 637, 810, 1069
Sau3AI	GATC	4 cut(s)	252, 280, 515, 601
Sau96I	GGNCC	4 cut(s)	153, 498, 799, 830
SchI	GAGTC	2 cut(s)	16, 309
ScrFI	CCNGG	3 cut(s)	31, 150, 746
SduI	GDGCHC	4 cut(s)	270, 397, 532, 893
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	2 cut(s)	6, 510
SinI	GGWCC	3 cut(s)	153, 799, 830
SmiMI	CAYNNNNRTG	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	1100
SphI	GCATGC	1 cut(s)	624
Sse9I	AATT	8 cut(s)	430, 519, 672, 737, 772, 789, 804, 814
SsiI	CCGC	9 cut(s)	226, 340, 378, 486, 636, 639, 879, 1068, 1091
SspMI	CTAG	1 cut(s)	1101
SstI	GAGCTC	1 cut(s)	532
StyD4I	CCNGG	3 cut(s)	29, 148, 744
StyI	CCWWGG	4 cut(s)	229, 826, 922, 951
TaaI	ACNGT	2 cut(s)	629, 1043
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	4 cut(s)	180, 279, 336, 741
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	8 cut(s)	430, 519, 672, 737, 772, 789, 804, 814
TatI	WGTACW	2 cut(s)	216, 345
TauI	GCSGC	2 cut(s)	639, 1071
Tru1I	TTAA	2 cut(s)	56, 558
Tru9I	TTAA	2 cut(s)	56, 558
TscAI	CASTG	2 cut(s)	634, 721
TseFI	GTSAC	2 cut(s)	301, 1096
TseI	GCWGC	2 cut(s)	260, 809
Tsp45I	GTSAC	2 cut(s)	301, 1096
TspDTI	ATGAA	3 cut(s)	166, 850, 1088
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	2 cut(s)	634, 721
VpaK11BI	GGWCC	3 cut(s)	153, 799, 830
XapI	RAATTY	3 cut(s)	430, 737, 814
XceI	RCATGY	3 cut(s)	223, 600, 624
XspI	CTAG	1 cut(s)	1101
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.