Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008020

Physical Location & Seq

Genomic Coordinates Reverse (-)

20198956 .. 20199409

Gene Structure 454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032870

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTGTGGAGACAGCCCGGCCTAGCTGGAGCTGGATTGCCTCTCGGATTCTCAATACCTGTAGCGCCTACTCCAGCGGCGGTAGGGCCGCGATTTTGCTCTCTGATCTCTCCCAGTAACCTCCTTGGAACAGAGAAAGAGTTCAAGATTTTCATGGAGAAATATAGGAAGAAGTATCCAACTAGAAAGGAGTACATGCACCGCCTCGGTGTTTTTGCCAATAACATGATTAGAGCCATTGAGCACCAAGTTCTGGATTCGACGACGGTCCACAGCGTCACACCTTTCTCAGATCTGTCCGAGGAGGAGTTCGAGGGGATGTATACCGGCGTGAGAGGTGGGCCCGGCTTAAACAATGGCGGAGGTTGCAGAGAGTACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

128

Amino Acids

13.98

Weight (kDa)

8.62

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	48 - 104	7.8e-14	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54940 AT3G54940
fragaria_vesca	FvH4_7g18550 FvH4_7g18550 FvH4_7g18550 FvH4_7g18581
malus_domestica	MD07G1169100.v1.1
prunus_persica	Prupe.2G207100_v2.0.a1
pyrus_communis	pycom07g16300
rosa_chinensis	RchiOBHm_Chr1g0362341 RchiOBHm_Chr3g0466551
rosa_laevigata	RLG00000032870
rosa_multiflora	Rmu_co8195178.1_g000001 Rmu_co8521771.1_g000001 Rmu_sc0003332.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054320 Rroxscaffold_4G00294240
rosa_rugosa	Rorug01G0297500
rosa_samantha	Rh1AG306400 Rh1BG269900 Rh1CG287400 Rh1DG300100 Rh3BG150800
rosa_wichuraiana	Rw1G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	323
AccII	CGCG	1 cut(s)	91
AciI	CCGC	5 cut(s)	77, 80, 89, 202, 360
AfaI	GTAC	2 cut(s)	194, 377
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	2 cut(s)	26, 32
AluI	AGCT	2 cut(s)	26, 32
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	4
AoxI	GGCC	3 cut(s)	19, 86, 341
ApaI	GGGCCC	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	4 cut(s)	86, 268, 341, 342
AsuC2I	CCSGG	2 cut(s)	18, 345
AvaII	GGWCC	1 cut(s)	268
BaeGI	GKGCMC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	246
BciVI	GTATCC	1 cut(s)	186
BcnI	CCSGG	2 cut(s)	18, 345
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	2 cut(s)	23, 183
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	2 cut(s)	78, 89
BlsI	GCNGC	2 cut(s)	79, 90
Bme1390I	CCNGG	2 cut(s)	18, 345
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	4 cut(s)	86, 268, 341, 342
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	2 cut(s)	18, 345
BmrI	ACTGGG	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	108
BoxI	GACNNNNGTC	1 cut(s)	266
BpmI	CTGGAG	2 cut(s)	48, 57
BpuMI	CCSGG	2 cut(s)	18, 345
BsaJI	CCNNGG	3 cut(s)	124, 205, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	124, 205, 300
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	317, 320
BseSI	GKGCMC	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	3 cut(s)	21, 88, 343
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	18, 327, 345
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	4
BsnI	GGCC	3 cut(s)	21, 88, 343
Bsp120I	GGGCCC	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	246, 345
Bsp143I	GATC	2 cut(s)	105, 292
BspACI	CCGC	5 cut(s)	77, 80, 89, 202, 360
BspANI	GGCC	3 cut(s)	21, 88, 343
BspCNI	CTCAG	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	124, 205, 300
BssMI	GATC	2 cut(s)	105, 292
BssNAI	GTATAC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	124
Bst1107I	GTATAC	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	268, 380
BstDEI	CTNAG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	108, 295
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	2 cut(s)	105, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	199
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	16, 343
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	345
BstUI	CGCG	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BstZ17I	GTATAC	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	3 cut(s)	21, 88, 343
BtsCI	GGATG	1 cut(s)	324
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	4 cut(s)	86, 268, 341, 342
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	193, 376
CviAII	CATG	3 cut(s)	154, 196, 226
CviJI	RGCY	8 cut(s)	16, 21, 26, 32, 88, 236, 343, 348
CviKI_1	RGCY	8 cut(s)	16, 21, 26, 32, 88, 236, 343, 348
CviQI	GTAC	2 cut(s)	193, 376
DdeI	CTNAG	1 cut(s)	289
DpnI	GATC	2 cut(s)	107, 294
DpnII	GATC	2 cut(s)	105, 292
EciI	GGCGGA	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	3 cut(s)	157, 199, 229
FaiI	YATR	5 cut(s)	155, 165, 197, 227, 324
FatI	CATG	3 cut(s)	153, 195, 225
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	2 cut(s)	78, 89
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	78, 89
FspBI	CTAG	2 cut(s)	23, 183
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	2 cut(s)	78, 89
GsuI	CTGGAG	2 cut(s)	48, 57
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	21, 88, 343
HapII	CCGG	3 cut(s)	18, 327, 345
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	157, 199, 229
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	2 cut(s)	48, 257
HpaII	CCGG	3 cut(s)	18, 327, 345
Hpy166II	GTNNAC	2 cut(s)	271, 324
Hpy188I	TCNGA	4 cut(s)	47, 105, 292, 301
Hpy188III	TCNNGA	2 cut(s)	145, 254
Hpy8I	GTNNAC	2 cut(s)	271, 324
Hpy99I	CGWCG	2 cut(s)	265, 268
HpyCH4III	ACNGT	2 cut(s)	268, 380
HpyCH4V	TGCA	2 cut(s)	199, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	1 cut(s)	289
Hsp92II	CATG	3 cut(s)	157, 199, 229
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	2 cut(s)	105, 292
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	9 cut(s)	12, 18, 31, 72, 87, 127, 239, 340, 358
MaeI	CTAG	2 cut(s)	23, 183
MaeIII	GTNAC	2 cut(s)	116, 277
MalI	GATC	2 cut(s)	107, 294
MboI	GATC	2 cut(s)	105, 292
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	246, 345
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	8 cut(s)	51, 131, 215, 295, 298, 307, 329, 356
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	3 cut(s)	18, 327, 345
MspR9I	CCNGG	2 cut(s)	18, 345
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	366
NciI	CCSGG	2 cut(s)	18, 345
NdeII	GATC	2 cut(s)	105, 292
NlaIII	CATG	3 cut(s)	157, 199, 229
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	48, 257
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	79, 90
PshAI	GACNNNNGTC	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	343
PspOMI	GGGCCC	1 cut(s)	341
PspPI	GGNCC	4 cut(s)	86, 268, 341, 342
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	2 cut(s)	194, 377
RsaNI	GTAC	2 cut(s)	193, 376
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	2 cut(s)	78, 89
Sau3AI	GATC	2 cut(s)	105, 292
Sau96I	GGNCC	4 cut(s)	86, 268, 341, 342
ScrFI	CCNGG	2 cut(s)	18, 345
SduI	GDGCHC	2 cut(s)	246, 345
SetI	ASST	7 cut(s)	28, 34, 61, 123, 286, 340, 367
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	268
SsiI	CCGC	5 cut(s)	77, 80, 89, 202, 360
SspMI	CTAG	2 cut(s)	23, 183
StyD4I	CCNGG	2 cut(s)	16, 343
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	268, 380
TaqI	TCGA	2 cut(s)	260, 312
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	2 cut(s)	80, 91
TfiI	GAWTC	2 cut(s)	48, 257
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	142
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	268
XceI	RCATGY	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	2 cut(s)	23, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.