RchiOBHm_Chr3g0466551

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0008020
Physical Location & Seq
Reverse (-)
12998367 .. 12998969
603 bp
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UTR
Exon/CDS
Intron
PRQ43262

Sequence Viewer

Length: 441 bp
ATGGAGAAATATGGGAAGAAATATCCAATTAGAAAGGAGTACATGCACCGCCTTGGTGTTTTTGCCAAGAACATGATCAGAGCCGCCGAGCACCAAGCTCTGGATCCGATGGCAGTCCACGATATCACACCGTTCTCTGATCTGTCCGAGGAGGAGTTCGAGGGGATGTACACTGGCGTGAGAGGTGGGCCCTGCTTAAACGACGGCAGCGGTGGTGCAGAGAGTACGGTTGAGCTCATGGATGTTAGTGGGTTGCCTGAGAGTTTTGATTGGAGAGAGAAGGGAGCTGTTACTGAGGTCAAGATGCAGAGACGGAGAGAAGATGCAGAGTTTCGGGCCAAAGCCGAGTTCTTGCTTTCTGGGGATGAAGATCAGTTCTTGCTTATGGGGACGAAGACCAGTTCTGATGGAGGCATGGGCAATTTGGGAATTTTTCCTTAG

Protein Analysis

146

Amino Acids

16.28

Weight (kDa)

4.92

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 1 - 53 1.8e-11 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 100
AciI CCGC 3 cut(s) 49, 84, 210
AclWI GGATC 2 cut(s) 98, 111
AcsI RAATTY 1 cut(s) 429
AfaI GTAC 3 cut(s) 41, 170, 226
AfiI CCNNNNNNNGG 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 3 cut(s) 98, 235, 287
AluI AGCT 3 cut(s) 98, 235, 287
Alw21I GWGCWC 2 cut(s) 93, 237
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 2 cut(s) 98, 111
AoxI GGCC 2 cut(s) 188, 336
ApaI GGGCCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 429
AspS9I GGNCC 3 cut(s) 188, 189, 336
BaeGI GKGCMC 1 cut(s) 192
BamHI GGATCC 1 cut(s) 103
BanII GRGCYC 2 cut(s) 192, 237
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 2 cut(s) 93, 237
BbvI GCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 103, 401
BceAI ACGGC 1 cut(s) 220
BclI TGATCA 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 304
BisI GCNGC 2 cut(s) 84, 208
BlsI GCNGC 2 cut(s) 85, 209
BmgT120I GGNCC 3 cut(s) 188, 189, 336
BmiI GGNNCC 2 cut(s) 105, 190
BmsI GCATC 2 cut(s) 294, 313
BpiI GAAGAC 1 cut(s) 401
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 52, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 178, 399
Bse8I GATNNNNATC 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 52, 147
BseGI GGATG 3 cut(s) 171, 247, 370
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 249, 285
BseNI ACTGG 2 cut(s) 178, 399
BseRI GAGGAG 2 cut(s) 164, 167
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 237
BshFI GGCC 2 cut(s) 190, 338
BsiHKAI GWGCWC 2 cut(s) 93, 237
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 304
BsmBI CGTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 2 cut(s) 190, 338
Bsp120I GGGCCC 1 cut(s) 188
Bsp1286I GDGCHC 3 cut(s) 93, 192, 237
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 4 cut(s) 75, 103, 139, 370
BspACI CCGC 3 cut(s) 49, 84, 210
BspANI GGCC 2 cut(s) 190, 338
BspCNI CTCAG 2 cut(s) 250, 286
BspLI GGNNCC 2 cut(s) 105, 190
BspPI GGATC 2 cut(s) 98, 111
BsrGI TGTACA 1 cut(s) 168
BsrI ACTGG 2 cut(s) 178, 399
BssECI CCNNGG 2 cut(s) 52, 147
BssMI GATC 4 cut(s) 75, 103, 139, 370
BssT1I CCWWGG 1 cut(s) 52
Bst4CI ACNGT 2 cut(s) 132, 229
BstAUI TGTACA 1 cut(s) 168
BstDEI CTNAG 3 cut(s) 258, 294, 438
BstF5I GGATG 3 cut(s) 171, 247, 370
BstKTI GATC 4 cut(s) 78, 106, 142, 373
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 4 cut(s) 75, 103, 139, 370
BstNSI RCATGY 1 cut(s) 46
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 2 cut(s) 190, 338
BtsCI GGATG 3 cut(s) 171, 247, 370
BtsIMutI CAGTG 1 cut(s) 171
Cfr13I GGNCC 3 cut(s) 188, 189, 336
Csp6I GTAC 3 cut(s) 40, 169, 225
CviAII CATG 4 cut(s) 43, 73, 238, 415
CviJI RGCY 7 cut(s) 83, 98, 190, 235, 287, 338, 344
CviKI_1 RGCY 7 cut(s) 83, 98, 190, 235, 287, 338, 344
CviQI GTAC 3 cut(s) 40, 169, 225
DdeI CTNAG 3 cut(s) 258, 294, 438
DpnI GATC 4 cut(s) 77, 105, 141, 372
DpnII GATC 4 cut(s) 75, 103, 139, 370
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 52
Eco24I GRGCYC 2 cut(s) 192, 237
Eco32I GATATC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 189
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 52
EcoT38I GRGCYC 2 cut(s) 192, 237
ErhI CCWWGG 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 4 cut(s) 46, 76, 241, 418
FaiI YATR 6 cut(s) 12, 44, 74, 239, 386, 416
FaqI GGGAC 1 cut(s) 403
FatI CATG 4 cut(s) 42, 72, 237, 414
FbaI TGATCA 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 84, 208
FokI GGATG 3 cut(s) 178, 254, 377
FriOI GRGCYC 2 cut(s) 192, 237
Fsp4HI GCNGC 2 cut(s) 84, 208
GluI GCNGC 2 cut(s) 84, 208
HaeIII GGCC 2 cut(s) 190, 338
Hin1II CATG 4 cut(s) 46, 76, 241, 418
Hpy166II GTNNAC 2 cut(s) 118, 171
Hpy188I TCNGA 5 cut(s) 80, 108, 139, 148, 406
Hpy188III TCNNGA 2 cut(s) 101, 301
Hpy8I GTNNAC 2 cut(s) 118, 171
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 132, 229
HpyCH4V TGCA 4 cut(s) 46, 218, 307, 326
HpyF3I CTNAG 3 cut(s) 258, 294, 438
Hsp92II CATG 4 cut(s) 46, 76, 241, 418
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 4 cut(s) 75, 103, 139, 370
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 6 cut(s) 86, 159, 205, 270, 345, 412
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 2 cut(s) 294, 313
MaeIII GTNAC 1 cut(s) 289
MalI GATC 4 cut(s) 77, 105, 141, 372
MboI GATC 4 cut(s) 75, 103, 139, 370
MboII GAAGA 4 cut(s) 28, 332, 380, 406
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 3 cut(s) 93, 192, 237
MluCI AATT 3 cut(s) 27, 421, 429
MnlI CCTC 6 cut(s) 142, 145, 154, 176, 289, 404
MseI TTAA 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 210
NdeII GATC 4 cut(s) 75, 103, 139, 370
NlaIII CATG 4 cut(s) 46, 76, 241, 418
NlaIV GGNNCC 2 cut(s) 105, 190
NmeAIII GCCGAG 2 cut(s) 112, 370
NspI RCATGY 1 cut(s) 46
OliI CACNNNNGTG 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 2 cut(s) 85, 209
Psp124BI GAGCTC 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 105, 190
PspOMI GGGCCC 1 cut(s) 188
PspPI GGNCC 3 cut(s) 188, 189, 336
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 3 cut(s) 41, 170, 226
RsaNI GTAC 3 cut(s) 40, 169, 225
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 2 cut(s) 84, 208
Sau3AI GATC 4 cut(s) 75, 103, 139, 370
Sau96I GGNCC 3 cut(s) 188, 189, 336
SduI GDGCHC 3 cut(s) 93, 192, 237
SetI ASST 5 cut(s) 100, 187, 237, 289, 300
SfaNI GCATC 2 cut(s) 294, 313
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 3 cut(s) 27, 421, 429
SsiI CCGC 3 cut(s) 49, 84, 210
SstI GAGCTC 1 cut(s) 237
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 2 cut(s) 132, 229
TaqI TCGA 1 cut(s) 159
TasI AATT 3 cut(s) 27, 421, 429
TatI WGTACW 2 cut(s) 39, 168
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 381
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 100
XapI RAATTY 1 cut(s) 429
XceI RCATGY 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.