Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008020

Physical Location & Seq

Genomic Coordinates Reverse (-)

75721297 .. 75722246

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00054320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGGCTGTTGCAAAGAGTACGATTGAGCTCAGGGATGTTAGTGGGTTGCCTGAGAGTTTTGATTGGAGAGAGAAGGGAGCTGTTACTAAGGTCAAGATGCAGATTAAATCCTTATCGCGATCAAGTGACTGCACATATGCTATAGATGTGTCCGGGTTGGTCATGTACAGAGACAGAGAGAAGATGCAGAGTTTCGAGCCAAAGCCGAGTTCTTCTGGAGCTGGGAGAGAGGCAGGGGCAATTTTGAAATTTTGCCTGATAGGTGGGGCGCATATGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

94

Amino Acids

10.23

Weight (kDa)

9.03

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54940 AT3G54940
fragaria_vesca	FvH4_7g18550 FvH4_7g18550 FvH4_7g18550 FvH4_7g18581
malus_domestica	MD07G1169100.v1.1
prunus_persica	Prupe.2G207100_v2.0.a1
pyrus_communis	pycom07g16300
rosa_chinensis	RchiOBHm_Chr1g0362341 RchiOBHm_Chr3g0466551
rosa_laevigata	RLG00000032870
rosa_multiflora	Rmu_co8195178.1_g000001 Rmu_co8521771.1_g000001 Rmu_sc0003332.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054320 Rroxscaffold_4G00294240
rosa_rugosa	Rorug01G0297500
rosa_samantha	Rh1AG306400 Rh1BG269900 Rh1CG287400 Rh1DG300100 Rh3BG150800
rosa_wichuraiana	Rw1G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	121
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	2 cut(s)	22, 170
AgsI	TTSAA	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	196, 228
AluBI	AGCT	3 cut(s)	31, 83, 224
AluI	AGCT	3 cut(s)	31, 83, 224
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	90, 177
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	45, 46
BseYI	CCCAGC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	122, 279
Bsp68I	TCGCGA	1 cut(s)	121
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	45, 46
BspFNI	CGCG	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	168
BssMI	GATC	2 cut(s)	122, 279
BstAUI	TGTACA	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	32, 54, 90
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	2 cut(s)	125, 282
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	122, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	43
BtuMI	TCGCGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	21, 169
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	6 cut(s)	8, 31, 83, 202, 208, 224
CviKI_1	RGCY	6 cut(s)	8, 31, 83, 202, 208, 224
CviQI	GTAC	2 cut(s)	21, 169
DdeI	CTNAG	3 cut(s)	32, 54, 90
DpnI	GATC	2 cut(s)	124, 281
DpnII	GATC	2 cut(s)	122, 279
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	1 cut(s)	169
FaiI	YATR	6 cut(s)	139, 141, 146, 167, 276, 278
FatI	CATG	1 cut(s)	165
FauNDI	CATATG	2 cut(s)	139, 276
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	240
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	3 cut(s)	97, 120, 219
HpyAV	CCTTC	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	14, 103, 135, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	32, 54, 90
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	122, 279
LmnI	GCTCC	2 cut(s)	80, 221
LpnPI	CCDG	7 cut(s)	19, 66, 169, 204, 210, 222, 272
LweI	GCATC	2 cut(s)	90, 177
MaeIII	GTNAC	2 cut(s)	85, 128
MalI	GATC	2 cut(s)	124, 281
MboI	GATC	2 cut(s)	122, 279
MboII	GAAGA	2 cut(s)	196, 207
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	243, 251
MnlI	CCTC	1 cut(s)	226
MseI	TTAA	1 cut(s)	108
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	157
NdeI	CATATG	2 cut(s)	139, 276
NdeII	GATC	2 cut(s)	122, 279
NlaIII	CATG	1 cut(s)	169
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	128
NruI	TCGCGA	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	224
RruI	TCGCGA	1 cut(s)	121
RsaI	GTAC	2 cut(s)	22, 170
RsaNI	GTAC	2 cut(s)	21, 169
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	122, 279
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	5 cut(s)	33, 85, 96, 226, 268
SfaNI	GCATC	2 cut(s)	90, 177
SfcI	CTRYAG	1 cut(s)	144
Sse9I	AATT	2 cut(s)	243, 251
SsiI	CCGC	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	155
TaqI	TCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	243, 251
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.