Rmu_co8521771.1_g000001

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8521771.1
Physical Location & Seq
Forward (+)
1 .. 2236
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8521771.1_g000001.1.cds

Sequence Viewer

Length: 1188 bp
ctaaagagagaacaaagaagagccaccgaaggaaaaatggccggaccacctctacctccacctattctaatgtgcttgattggtgttgcagtcttaacctgcgcactaactctctgtgtagccctagatgtcaccgctcaagactcaatcatccaccaagtcacagatcatgacagctctcgaaaattctcgagtggtagtaacctccttggaaccgagaaagagttcaagattttcatggagaaatatgggaagaagtatccaactagaaaggagtacatgcaccgcctcggtgtttttgccaagaacatgatcagagccgccgagcaccaagctctggatccgatggcggtccacggcgtcacaccgttctcggatctgtccgaggaggagttcgaggggatgtacactggcgtaagaggtggggccggcttaaacgactgcggtggcggtgcagagagtacggttgagcttatggatgttagtgggttacctgagagttttgattggagagagaagggagctgttactgaggtcaagatgcagggtggttgtggtgcgtgctgggcctttagcacaacaggagctactgaaggagccaatttcattgccacagggaagcttgttagtctcagtgaacagcagcttgtggactgcgatcatgtgtgcgatgcaaaagagaaagatgcgtgcgaccgtggttgtggtggcggacttatgacaaatgcctacaagtatctaattgaagcaggagggttgcaggatgaggcttcatacccttatacgggaaagaagggtgaatgcaaattcaatcctgaaaaggtagcagtgagagtggccaatttcaccaatattccacttgatgagaaccaaattgcagcgaacttggtccaccatggtcctcttgccattgggttgaatgctatgttcatgcaaacctacattgggggtgtatcatgccctcttgtttgtttcaagagatgggtgaaccacggtgttttacttgttggatacggtgacaagggcttctcgatcctcaggctgagcaacaaaccgtactggatcatcaagaattcatggagctcaaaatggggcgaacatggttattaccggctttgccgaggccatggcatgtgtgggatgaatactatggtctctgcggttgtgaccagttctagagcatcctag

Protein Analysis

395

Amino Acids

42.91

Weight (kDa)

6.88

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 337
AccBSI CCGCTC 1 cut(s) 137
AciI CCGC 8 cut(s) 135, 286, 321, 350, 444, 450, 711, 1160
AclWI GGATC 5 cut(s) 335, 348, 384, 1027, 1070
AcoI YGGCCR 2 cut(s) 39, 837
AcsI RAATTY 3 cut(s) 185, 806, 1072
AcuI CTGAAG 1 cut(s) 612
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 4 cut(s) 278, 407, 463, 1058
AfiI CCNNNNNNNGG 4 cut(s) 337, 784, 785, 945
AgsI TTSAA 5 cut(s) 229, 746, 811, 919, 976
AluBI AGCT 8 cut(s) 177, 335, 472, 524, 587, 622, 646, 1083
AluI AGCT 8 cut(s) 177, 335, 472, 524, 587, 622, 646, 1083
Alw21I GWGCWC 2 cut(s) 330, 1085
Alw26I GTCTC 2 cut(s) 635, 1159
AlwI GGATC 5 cut(s) 335, 348, 384, 1027, 1070
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 5 cut(s) 39, 426, 567, 837, 1123
ApeKI GCWGC 2 cut(s) 643, 878
ApoI RAATTY 3 cut(s) 185, 806, 1072
Asp700I GAANNNNTTC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 6 cut(s) 44, 352, 426, 567, 889, 899
AsuHPI GGTGA 5 cut(s) 124, 809, 838, 997, 1028
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 4 cut(s) 44, 352, 889, 899
AxyI CCTNAGG 1 cut(s) 1037
BalI TGGCCA 1 cut(s) 839
BamHI GGATCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 1085
Bbv12I GWGCWC 2 cut(s) 330, 1085
BbvI GCAGC 2 cut(s) 655, 890
BccI CCATC 2 cut(s) 340, 975
BceAI ACGGC 1 cut(s) 373
BciVI GTATCC 2 cut(s) 270, 1004
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 635, 1159
BfaI CTAG 4 cut(s) 125, 267, 1176, 1186
BfuAI ACCTGC 1 cut(s) 107
BfuI GTATCC 2 cut(s) 270, 1004
BisI GCNGC 3 cut(s) 321, 644, 879
BlpI GCTNAGC 1 cut(s) 1043
BlsI GCNGC 3 cut(s) 322, 645, 880
Bme18I GGWCC 4 cut(s) 44, 352, 889, 899
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 6 cut(s) 44, 352, 426, 567, 889, 899
BmiI GGNNCC 4 cut(s) 214, 342, 427, 598
BmsI GCATC 3 cut(s) 531, 661, 676
Bpu1102I GCTNAGC 1 cut(s) 1043
BpuEI CTTGAG 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 1159
BsaJI CCNNGG 9 cut(s) 208, 289, 355, 384, 697, 895, 991, 1120, 1126
Bsc4I CCNNNNNNNGG 4 cut(s) 337, 784, 785, 945
Bse118I RCCGGY 2 cut(s) 428, 1110
Bse1I ACTGG 3 cut(s) 415, 1064, 1170
Bse21I CCTNAGG 1 cut(s) 1037
Bse3DI GCAATG 1 cut(s) 606
BseDI CCNNGG 9 cut(s) 208, 289, 355, 384, 697, 895, 991, 1120, 1126
BseGI GGATG 6 cut(s) 150, 408, 484, 769, 1146, 1181
BseLI CCNNNNNNNGG 4 cut(s) 337, 784, 785, 945
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 5 cut(s) 486, 522, 646, 1034, 1051
BseNI ACTGG 3 cut(s) 415, 1064, 1170
BseRI GAGGAG 2 cut(s) 401, 404
BseXI GCAGC 2 cut(s) 655, 890
BseYI CCCAGC 1 cut(s) 564
BsgI GTGCAG 1 cut(s) 474
Bsh1285I CGRYCG 1 cut(s) 697
BshFI GGCC 5 cut(s) 41, 428, 569, 839, 1125
BsiEI CGRYCG 1 cut(s) 697
BsiHKAI GWGCWC 2 cut(s) 330, 1085
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 3 cut(s) 42, 429, 1111
BslI CCNNNNNNNGG 4 cut(s) 337, 784, 785, 945
BsmAI GTCTC 2 cut(s) 635, 1159
BsmI GAATGC 2 cut(s) 806, 925
BsnI GGCC 5 cut(s) 41, 428, 569, 839, 1125
Bso31I GGTCTC 1 cut(s) 1159
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 330, 1085
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 7 cut(s) 166, 312, 340, 376, 658, 1032, 1062
Bsp1720I GCTNAGC 1 cut(s) 1043
Bsp19I CCATGG 2 cut(s) 895, 1126
BspACI CCGC 8 cut(s) 135, 286, 321, 350, 444, 450, 711, 1160
BspANI GGCC 5 cut(s) 41, 428, 569, 839, 1125
BspCNI CTCAG 5 cut(s) 487, 523, 645, 1035, 1050
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 4 cut(s) 214, 342, 427, 598
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 5 cut(s) 335, 348, 384, 1027, 1070
BspQI GCTCTTC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 1159
BsrBI CCGCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 606
BsrFI RCCGGY 2 cut(s) 428, 1110
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 3 cut(s) 415, 1064, 1170
BssAI RCCGGY 2 cut(s) 428, 1110
BssECI CCNNGG 9 cut(s) 208, 289, 355, 384, 697, 895, 991, 1120, 1126
BssMI GATC 7 cut(s) 166, 312, 340, 376, 658, 1032, 1062
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 3 cut(s) 208, 895, 1126
Bst4CI ACNGT 6 cut(s) 369, 466, 698, 995, 1016, 1056
Bst6I CTCTTC 1 cut(s) 13
BstACI GRCGYC 1 cut(s) 360
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 3 cut(s) 430, 562, 691
BstDEI CTNAG 5 cut(s) 495, 531, 632, 1037, 1043
BstDSI CCRYGG 5 cut(s) 355, 697, 895, 991, 1126
BstEII GGTNACC 1 cut(s) 489
BstF5I GGATG 6 cut(s) 150, 408, 484, 769, 1146, 1181
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 7 cut(s) 169, 315, 343, 379, 661, 1035, 1065
BstMAI GTCTC 2 cut(s) 635, 1159
BstMBI GATC 7 cut(s) 166, 312, 340, 376, 658, 1032, 1062
BstMCI CGRYCG 1 cut(s) 697
BstMWI GCNNNNNNNGC 1 cut(s) 566
BstNSI RCATGY 2 cut(s) 283, 1135
BstPI GGTNACC 1 cut(s) 489
BstV1I GCAGC 2 cut(s) 655, 890
BstX2I RGATCY 2 cut(s) 340, 376
BstYI RGATCY 2 cut(s) 340, 376
Bsu36I CCTNAGG 1 cut(s) 1037
BsuI GTATCC 2 cut(s) 270, 1004
BsuRI GGCC 5 cut(s) 41, 428, 569, 839, 1125
BtgI CCRYGG 5 cut(s) 355, 697, 895, 991, 1126
BtgZI GCGATG 1 cut(s) 684
BtsCI GGATG 6 cut(s) 150, 408, 484, 769, 1146, 1181
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 3 cut(s) 408, 640, 834
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 3 cut(s) 430, 562, 691
CciI TCATGA 1 cut(s) 169
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 2 cut(s) 428, 1110
Cfr13I GGNCC 6 cut(s) 44, 352, 426, 567, 889, 899
CseI GACGC 1 cut(s) 349
Csp6I GTAC 4 cut(s) 277, 406, 462, 1057
CviQI GTAC 4 cut(s) 277, 406, 462, 1057
DdeI CTNAG 5 cut(s) 495, 531, 632, 1037, 1043
DpnI GATC 7 cut(s) 168, 314, 342, 378, 660, 1034, 1064
DpnII GATC 7 cut(s) 166, 312, 340, 376, 658, 1032, 1062
EaeI YGGCCR 2 cut(s) 39, 837
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
EciI GGCGGA 1 cut(s) 726
Ecl136II GAGCTC 1 cut(s) 1083
Eco130I CCWWGG 3 cut(s) 208, 895, 1126
Eco24I GRGCYC 1 cut(s) 1085
Eco31I GGTCTC 1 cut(s) 1159
Eco47I GGWCC 4 cut(s) 44, 352, 889, 899
Eco53kI GAGCTC 1 cut(s) 1083
Eco57I CTGAAG 1 cut(s) 612
Eco81I CCTNAGG 1 cut(s) 1037
Eco88I CYCGRG 1 cut(s) 190
Eco91I GGTNACC 1 cut(s) 489
EcoICRI GAGCTC 1 cut(s) 1083
EcoO65I GGTNACC 1 cut(s) 489
EcoRI GAATTC 1 cut(s) 1072
EcoT14I CCWWGG 3 cut(s) 208, 895, 1126
EcoT38I GRGCYC 1 cut(s) 1085
ErhI CCWWGG 3 cut(s) 208, 895, 1126
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 321, 644, 879
FokI GGATG 6 cut(s) 137, 415, 491, 776, 1153, 1168
FriOI GRGCYC 1 cut(s) 1085
Fsp4HI GCNGC 3 cut(s) 321, 644, 879
FspBI CTAG 4 cut(s) 125, 267, 1176, 1186
FspI TGCGCA 1 cut(s) 103
GlaI GCGC 1 cut(s) 103
GluI GCNGC 3 cut(s) 321, 644, 879
GsaI CCCAGC 1 cut(s) 568
HaeIII GGCC 5 cut(s) 41, 428, 569, 839, 1125
HapII CCGG 3 cut(s) 42, 429, 1111
HgaI GACGC 1 cut(s) 349
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 360
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 1 cut(s) 143
HpaII CCGG 3 cut(s) 42, 429, 1111
HphI GGTGA 5 cut(s) 124, 809, 838, 997, 1028
Hpy166II GTNNAC 6 cut(s) 355, 408, 638, 652, 892, 988
Hpy188I TCNGA 4 cut(s) 317, 345, 376, 385
Hpy8I GTNNAC 6 cut(s) 355, 408, 638, 652, 892, 988
HpyAV CCTTC 4 cut(s) 23, 511, 587, 787
HpyCH4III ACNGT 6 cut(s) 369, 466, 698, 995, 1016, 1056
HpyCH4V TGCA 9 cut(s) 89, 283, 455, 544, 674, 760, 804, 878, 934
HpyF10VI GCNNNNNNNGC 1 cut(s) 566
HpyF3I CTNAG 5 cut(s) 495, 531, 632, 1037, 1043
Hsp92I GRCGYC 1 cut(s) 360
HspAI GCGC 1 cut(s) 102
KroI GCCGGC 1 cut(s) 428
KroNI GCCGGC 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 7 cut(s) 166, 312, 340, 376, 658, 1032, 1062
LguI GCTCTTC 1 cut(s) 13
LmnI GCTCC 4 cut(s) 521, 584, 596, 1080
Lsp1109I GCAGC 2 cut(s) 655, 890
LweI GCATC 3 cut(s) 531, 661, 676
MaeI CTAG 4 cut(s) 125, 267, 1176, 1186
MaeIII GTNAC 8 cut(s) 130, 160, 200, 361, 489, 526, 1016, 1165
MalI GATC 7 cut(s) 168, 314, 342, 378, 660, 1034, 1064
MbiI CCGCTC 1 cut(s) 137
MboI GATC 7 cut(s) 166, 312, 340, 376, 658, 1032, 1062
MboII GAAGA 2 cut(s) 30, 265
MflI RGATCY 2 cut(s) 340, 376
MhlI GDGCHC 2 cut(s) 330, 1085
MlsI TGGCCA 1 cut(s) 839
MluCI AATT 7 cut(s) 185, 601, 741, 806, 841, 873, 1072
MluNI TGGCCA 1 cut(s) 839
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 287, 988
Mox20I TGGCCA 1 cut(s) 839
MroNI GCCGGC 1 cut(s) 428
MroXI GAANNNNTTC 1 cut(s) 224
MscI TGGCCA 1 cut(s) 839
MseI TTAA 2 cut(s) 95, 434
Msp20I TGGCCA 1 cut(s) 839
MspI CCGG 3 cut(s) 42, 429, 1111
Mva1269I GAATGC 2 cut(s) 806, 925
MwoI GCNNNNNNNGC 1 cut(s) 566
NaeI GCCGGC 1 cut(s) 430
NcoI CCATGG 2 cut(s) 895, 1126
NdeII GATC 7 cut(s) 166, 312, 340, 376, 658, 1032, 1062
NgoMIV GCCGGC 1 cut(s) 428
NlaIV GGNNCC 4 cut(s) 214, 342, 427, 598
NmeAIII GCCGAG 2 cut(s) 349, 1145
NmuCI GTSAC 5 cut(s) 130, 160, 361, 1016, 1165
NsbI TGCGCA 1 cut(s) 103
NspI RCATGY 2 cut(s) 283, 1135
PaeR7I CTCGAG 1 cut(s) 190
PagI TCATGA 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 13
PctI GAATGC 2 cut(s) 806, 925
PdiI GCCGGC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 224
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 3 cut(s) 322, 645, 880
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 1085
PspEI GGTNACC 1 cut(s) 489
PspFI CCCAGC 1 cut(s) 564
PspN4I GGNNCC 4 cut(s) 214, 342, 427, 598
PspPI GGNCC 6 cut(s) 44, 352, 426, 567, 889, 899
PsuI RGATCY 2 cut(s) 340, 376
RsaI GTAC 4 cut(s) 278, 407, 463, 1058
RsaNI GTAC 4 cut(s) 277, 406, 462, 1057
SacI GAGCTC 1 cut(s) 1085
SapI GCTCTTC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 95, 434
SatI GCNGC 3 cut(s) 321, 644, 879
Sau3AI GATC 7 cut(s) 166, 312, 340, 376, 658, 1032, 1062
Sau96I GGNCC 6 cut(s) 44, 352, 426, 567, 889, 899
SchI GAGTC 1 cut(s) 137
SduI GDGCHC 2 cut(s) 330, 1085
SfaNI GCATC 3 cut(s) 531, 661, 676
Sfr274I CTCGAG 1 cut(s) 190
SinI GGWCC 4 cut(s) 44, 352, 889, 899
SlaI CTCGAG 1 cut(s) 190
SmlI CTYRAG 2 cut(s) 138, 190
SmoI CTYRAG 2 cut(s) 138, 190
Sse9I AATT 7 cut(s) 185, 601, 741, 806, 841, 873, 1072
SsiI CCGC 8 cut(s) 135, 286, 321, 350, 444, 450, 711, 1160
SspI AATATT 1 cut(s) 853
SspMI CTAG 4 cut(s) 125, 267, 1176, 1186
SstI GAGCTC 1 cut(s) 1085
StyI CCWWGG 3 cut(s) 208, 895, 1126
TaaI ACNGT 6 cut(s) 369, 466, 698, 995, 1016, 1056
TaqI TCGA 4 cut(s) 181, 191, 396, 1031
TasI AATT 7 cut(s) 185, 601, 741, 806, 841, 873, 1072
TatI WGTACW 2 cut(s) 276, 405
TauI GCSGC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 95, 434
Tru9I TTAA 2 cut(s) 95, 434
TscAI CASTG 3 cut(s) 415, 640, 834
TseFI GTSAC 5 cut(s) 130, 160, 361, 1016, 1165
TseI GCWGC 2 cut(s) 643, 878
Tsp45I GTSAC 5 cut(s) 130, 160, 361, 1016, 1165
TspDTI ATGAA 6 cut(s) 226, 595, 762, 919, 1065, 1157
TspRI CASTG 3 cut(s) 415, 640, 834
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 4 cut(s) 44, 352, 889, 899
XapI RAATTY 3 cut(s) 185, 806, 1072
XbaI TCTAGA 1 cut(s) 1175
XceI RCATGY 2 cut(s) 283, 1135
XcmI CCANNNNNNNNNTGG 1 cut(s) 1133
XhoI CTCGAG 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 4 cut(s) 125, 267, 1176, 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.