Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008020

Physical Location & Seq

Genomic Coordinates Forward (+)

15459593 .. 15462054

Gene Structure 2462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCCGGACCACCTCTACCTCCACCTCTTCTAACGTGTTTGGTGGGTGTTGCAGTCTTAATCTGCGCACTAACCCTCTGTGTTGCCCTAGATGTCAGCCCCCAAGACCCAATCATCCACCAAGTCACAGACCATGATACTAATAAGCTCCTTGGAACCGAAAAAGAGTTCAAGATTTTCATGGAGAAGTATGGGAAGAAGTACCCTACTATGAAGGAGTACATGCACCGCCTCGGTGTTTTTGCCAAGAACATGATCAGAGCCGCCGAGCACCAAGCTCTGGATCCGACGGCGGTTCACGGCGTCACGCCGTTCTCGGATCTGGAGGAGGAGGAGTTCAAGAGGATGTACACCGGCGTAAGAGGTGCGCCCGGCTTAACCAACGGCGGAGGCGGTGCGGGAAGCACGGTTGAGCTTCTGGATGTTAGCGGGTTGCCTGAGAGTTTTGATTGGAGAGAAAAAGGAGCTGTTACTGAGGTCAAGATGCAGGGTGGCTGTGGGTCATGCTGGGCCTTTAGCACAACAGGAGCTATTGAAGGAGCCAATTTCATTGCCACTGGGAAGCTTGTTAGTCTCAGTGAACAGCAGCTTGTTGACTGTGATCACCAGTGTGATGCAAAAGAGAAAGATGCATGTGATCGTGGTTGTGGTGGCGGACTTATGACAAATGCCTACAAGTATCTAATGGAAGCAGGAGGGTTGCAAGACGAGGTTTCATACCCTTATACGGGGAAAAAGGGCGAATGCAAATTTAATCCTGAAAAAGTAGCCGTGAGAGTAACCAATTTCACCACTATTCCCCTTGATGAGAATCAGATTGCAGCGAACTTGGTCCACAATGGTCCTCTTGCCATTGGCTTGAATGCTATGTTCATGCAAACCTACATTGGCGGTGTGTCATGCCCTCTTGTTTGTTTCAAGAAATGGGTGAACCACGGTGTTTTACTTGTTGGATATGGTGAGAGTGGCTTCTCGATTCTCAGGCTCAGCAACAAGCCGTATTGGATCATCAAGAATTCATGGAGCGCAAAATGGGGAGAACATGGTTATTACCGACTTTGCCGAGGCCATGGCATGTGTGGGATGAATACTATGGTGTCTGCAGTTGTGACCAGTACTCGGGCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

377

Amino Acids

40.77

Weight (kDa)

6.37

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	57 - 113	1.3e-13	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	145 - 369	9.2e-73	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54940 AT3G54940
fragaria_vesca	FvH4_7g18550 FvH4_7g18550 FvH4_7g18550 FvH4_7g18581
malus_domestica	MD07G1169100.v1.1
prunus_persica	Prupe.2G207100_v2.0.a1
pyrus_communis	pycom07g16300
rosa_chinensis	RchiOBHm_Chr1g0362341 RchiOBHm_Chr3g0466551
rosa_laevigata	RLG00000032870
rosa_multiflora	Rmu_co8195178.1_g000001 Rmu_co8521771.1_g000001 Rmu_sc0003332.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054320 Rroxscaffold_4G00294240
rosa_rugosa	Rorug01G0297500
rosa_samantha	Rh1AG306400 Rh1BG269900 Rh1CG287400 Rh1DG300100 Rh3BG150800
rosa_wichuraiana	Rw1G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	67
AccB7I	CCANNNNNTGG	1 cut(s)	280
AciI	CCGC	9 cut(s)	229, 264, 293, 387, 393, 398, 429, 654, 891
AclWI	GGATC	4 cut(s)	278, 291, 327, 1013
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	749, 1015
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	4 cut(s)	203, 221, 350, 1117
AfiI	CCNNNNNNNGG	4 cut(s)	280, 727, 728, 1119
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	5 cut(s)	172, 340, 536, 862, 919
AleI	CACNNNNGTG	1 cut(s)	609
AloI	GAACNNNNNNTCC	2 cut(s)	320, 352
AluBI	AGCT	7 cut(s)	148, 278, 415, 467, 530, 565, 589
AluI	AGCT	7 cut(s)	148, 278, 415, 467, 530, 565, 589
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	4 cut(s)	278, 291, 327, 1013
Ama87I	CYCGRG	1 cut(s)	1119
AoxI	GGCC	3 cut(s)	3, 510, 1066
ApeKI	GCWGC	2 cut(s)	586, 821
ApoI	RAATTY	2 cut(s)	749, 1015
AspLEI	GCGC	3 cut(s)	68, 370, 1028
AspS9I	GGNCC	4 cut(s)	8, 510, 832, 842
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	4 cut(s)	596, 781, 940, 971
AvaI	CYCGRG	1 cut(s)	1119
AvaII	GGWCC	3 cut(s)	8, 832, 842
BamHI	GGATCC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	598, 833
BceAI	ACGGC	6 cut(s)	295, 306, 316, 400, 755, 982
BclI	TGATCA	2 cut(s)	255, 601
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	2 cut(s)	89, 1129
BfmI	CTRYAG	1 cut(s)	1101
BisI	GCNGC	3 cut(s)	264, 587, 822
BlpI	GCTNAGC	1 cut(s)	986
BlsI	GCNGC	3 cut(s)	265, 588, 823
BmcAI	AGTACT	1 cut(s)	1117
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	3 cut(s)	8, 832, 842
BmeT110I	CYCGRG	1 cut(s)	1119
BmgT120I	GGNCC	4 cut(s)	8, 510, 832, 842
BmiI	GGNNCC	3 cut(s)	157, 285, 541
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	3 cut(s)	474, 604, 619
BmuI	ACTGGG	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	344
Bpu1102I	GCTNAGC	1 cut(s)	986
BpuMI	CCSGG	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	810
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	5 cut(s)	151, 232, 934, 1063, 1069
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 727, 728, 1119
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	562, 607, 1113
Bse3DI	GCAATG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	810
BseDI	CCNNGG	5 cut(s)	151, 232, 934, 1063, 1069
BseGI	GGATG	5 cut(s)	114, 351, 427, 1089, 1124
BseJI	GATNNNNATC	1 cut(s)	810
BseLI	CCNNNNNNNGG	4 cut(s)	280, 727, 728, 1119
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	5 cut(s)	429, 465, 589, 994, 1000
BseNI	ACTGG	3 cut(s)	562, 607, 1113
BseRI	GAGGAG	3 cut(s)	341, 344, 347
BseXI	GCAGC	2 cut(s)	598, 833
BseYI	CCCAGC	1 cut(s)	507
BshFI	GGCC	3 cut(s)	5, 512, 1068
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	1119
BsiSI	CCGG	3 cut(s)	6, 354, 372
BslI	CCNNNNNNNGG	4 cut(s)	280, 727, 728, 1119
BsmAI	GTCTC	1 cut(s)	578
BsmI	GAATGC	2 cut(s)	749, 868
BsnI	GGCC	3 cut(s)	5, 512, 1068
BsoBI	CYCGRG	1 cut(s)	1119
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	6 cut(s)	255, 283, 319, 601, 637, 1005
Bsp1720I	GCTNAGC	1 cut(s)	986
Bsp19I	CCATGG	1 cut(s)	1069
BspACI	CCGC	9 cut(s)	229, 264, 293, 387, 393, 398, 429, 654, 891
BspANI	GGCC	3 cut(s)	5, 512, 1068
BspCNI	CTCAG	5 cut(s)	430, 466, 588, 993, 999
BspLI	GGNNCC	3 cut(s)	157, 285, 541
BspMAI	CTGCAG	1 cut(s)	1105
BspPI	GGATC	4 cut(s)	278, 291, 327, 1013
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	353
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	3 cut(s)	562, 607, 1113
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	5 cut(s)	151, 232, 934, 1063, 1069
BssMI	GATC	6 cut(s)	255, 283, 319, 601, 637, 1005
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	2 cut(s)	151, 1069
Bst4CI	ACNGT	3 cut(s)	409, 599, 938
Bst6I	CTCTTC	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	303
BstAUI	TGTACA	1 cut(s)	348
BstDEI	CTNAG	5 cut(s)	438, 474, 575, 980, 986
BstDSI	CCRYGG	2 cut(s)	934, 1069
BstF5I	GGATG	5 cut(s)	114, 351, 427, 1089, 1124
BstHHI	GCGC	3 cut(s)	68, 370, 1028
BstKTI	GATC	6 cut(s)	258, 286, 322, 604, 640, 1008
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	6 cut(s)	255, 283, 319, 601, 637, 1005
BstNSI	RCATGY	3 cut(s)	226, 636, 1078
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	1101
BstV1I	GCAGC	2 cut(s)	598, 833
BstX2I	RGATCY	2 cut(s)	283, 319
BstYI	RGATCY	2 cut(s)	283, 319
BsuRI	GGCC	3 cut(s)	5, 512, 1068
BtgI	CCRYGG	2 cut(s)	934, 1069
BtsCI	GGATG	5 cut(s)	114, 351, 427, 1089, 1124
BtsIMutI	CAGTG	3 cut(s)	555, 583, 614
CfoI	GCGC	3 cut(s)	68, 370, 1028
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	4 cut(s)	8, 510, 832, 842
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	4 cut(s)	202, 220, 349, 1116
CviQI	GTAC	4 cut(s)	202, 220, 349, 1116
DdeI	CTNAG	5 cut(s)	438, 474, 575, 980, 986
DpnI	GATC	6 cut(s)	257, 285, 321, 603, 639, 1007
DpnII	GATC	6 cut(s)	255, 283, 319, 601, 637, 1005
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EciI	GGCGGA	2 cut(s)	402, 669
Eco130I	CCWWGG	2 cut(s)	151, 1069
Eco47I	GGWCC	3 cut(s)	8, 832, 842
Eco88I	CYCGRG	1 cut(s)	1119
EcoRI	GAATTC	1 cut(s)	1015
EcoT14I	CCWWGG	2 cut(s)	151, 1069
EcoT22I	ATGCAT	1 cut(s)	634
ErhI	CCWWGG	2 cut(s)	151, 1069
FauI	CCCGC	2 cut(s)	391, 422
FbaI	TGATCA	2 cut(s)	255, 601
Fnu4HI	GCNGC	3 cut(s)	264, 587, 822
FokI	GGATG	5 cut(s)	101, 358, 434, 1096, 1111
Fsp4HI	GCNGC	3 cut(s)	264, 587, 822
FspBI	CTAG	2 cut(s)	89, 1129
FspI	TGCGCA	1 cut(s)	67
GlaI	GCGC	3 cut(s)	67, 369, 1027
GluI	GCNGC	3 cut(s)	264, 587, 822
GsaI	CCCAGC	1 cut(s)	511
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	3 cut(s)	5, 512, 1068
HapII	CCGG	3 cut(s)	6, 354, 372
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	3 cut(s)	68, 370, 1028
Hin1I	GRCGYC	1 cut(s)	303
Hin6I	GCGC	3 cut(s)	66, 368, 1026
HinP1I	GCGC	3 cut(s)	66, 368, 1026
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	811, 976
HpaII	CCGG	3 cut(s)	6, 354, 372
HphI	GGTGA	4 cut(s)	596, 781, 940, 971
Hpy166II	GTNNAC	6 cut(s)	298, 351, 581, 595, 835, 931
Hpy188I	TCNGA	4 cut(s)	260, 288, 319, 816
Hpy8I	GTNNAC	6 cut(s)	298, 351, 581, 595, 835, 931
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	208, 530
HpyCH4III	ACNGT	3 cut(s)	409, 599, 938
HpyCH4IV	ACGT	1 cut(s)	35
HpyF3I	CTNAG	5 cut(s)	438, 474, 575, 980, 986
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	303
HspAI	GCGC	3 cut(s)	66, 368, 1026
Ksp22I	TGATCA	2 cut(s)	255, 601
Kzo9I	GATC	6 cut(s)	255, 283, 319, 601, 637, 1005
LmnI	GCTCC	5 cut(s)	153, 464, 527, 539, 1023
Lsp1109I	GCAGC	2 cut(s)	598, 833
LweI	GCATC	3 cut(s)	474, 604, 619
MaeI	CTAG	2 cut(s)	89, 1129
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	5 cut(s)	124, 304, 469, 778, 1108
MalI	GATC	6 cut(s)	257, 285, 321, 603, 639, 1007
MboI	GATC	6 cut(s)	255, 283, 319, 601, 637, 1005
MboII	GAAGA	2 cut(s)	20, 208
MflI	RGATCY	2 cut(s)	283, 319
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	4 cut(s)	544, 749, 784, 1015
MmeI	TCCRAC	2 cut(s)	311, 931
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	3 cut(s)	59, 377, 753
MslI	CAYNNNNRTG	1 cut(s)	609
MspI	CCGG	3 cut(s)	6, 354, 372
MspR9I	CCNGG	1 cut(s)	372
Mva1269I	GAATGC	2 cut(s)	749, 868
NciI	CCSGG	1 cut(s)	372
NcoI	CCATGG	1 cut(s)	1069
NdeII	GATC	6 cut(s)	255, 283, 319, 601, 637, 1005
NlaIV	GGNNCC	3 cut(s)	157, 285, 541
NmeAIII	GCCGAG	2 cut(s)	292, 1088
NmuCI	GTSAC	3 cut(s)	124, 304, 1108
NsbI	TGCGCA	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	3 cut(s)	226, 636, 1078
OliI	CACNNNNGTG	1 cut(s)	609
PctI	GAATGC	2 cut(s)	749, 868
PfeI	GAWTC	2 cut(s)	811, 976
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	265, 588, 823
PspFI	CCCAGC	1 cut(s)	507
PspN4I	GGNNCC	3 cut(s)	157, 285, 541
PspPI	GGNCC	4 cut(s)	8, 510, 832, 842
PstI	CTGCAG	1 cut(s)	1105
PsuI	RGATCY	2 cut(s)	283, 319
RsaI	GTAC	4 cut(s)	203, 221, 350, 1117
RsaNI	GTAC	4 cut(s)	202, 220, 349, 1116
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	59, 377, 753
SatI	GCNGC	3 cut(s)	264, 587, 822
Sau3AI	GATC	6 cut(s)	255, 283, 319, 601, 637, 1005
Sau96I	GGNCC	4 cut(s)	8, 510, 832, 842
ScaI	AGTACT	1 cut(s)	1117
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	3 cut(s)	474, 604, 619
SfcI	CTRYAG	1 cut(s)	1101
SgrAI	CRCCGGYG	1 cut(s)	353
SinI	GGWCC	3 cut(s)	8, 832, 842
SmiMI	CAYNNNNRTG	1 cut(s)	609
Sse9I	AATT	4 cut(s)	544, 749, 784, 1015
SsiI	CCGC	9 cut(s)	229, 264, 293, 387, 393, 398, 429, 654, 891
SspMI	CTAG	2 cut(s)	89, 1129
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	2 cut(s)	151, 1069
TaaI	ACNGT	3 cut(s)	409, 599, 938
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	974
TasI	AATT	4 cut(s)	544, 749, 784, 1015
TatI	WGTACW	3 cut(s)	219, 348, 1115
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	811, 976
Tru1I	TTAA	3 cut(s)	59, 377, 753
Tru9I	TTAA	3 cut(s)	59, 377, 753
TscAI	CASTG	3 cut(s)	562, 583, 614
TseFI	GTSAC	3 cut(s)	124, 304, 1108
TseI	GCWGC	2 cut(s)	586, 821
Tsp45I	GTSAC	3 cut(s)	124, 304, 1108
TspDTI	ATGAA	7 cut(s)	169, 227, 538, 705, 862, 1008, 1100
TspRI	CASTG	3 cut(s)	562, 583, 614
Van91I	CCANNNNNTGG	1 cut(s)	280
VpaK11BI	GGWCC	3 cut(s)	8, 832, 842
XapI	RAATTY	2 cut(s)	749, 1015
XceI	RCATGY	3 cut(s)	226, 636, 1078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1076
XspI	CTAG	2 cut(s)	89, 1129
ZrmI	AGTACT	1 cut(s)	1117
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.