Rh1BG269900

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
40412362 .. 40414356
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG269900.1

Sequence Viewer

Length: 1185 bp
ATGGCCGGACCACCTGTACCTCCACCTATTCTAATGTGCTTGGTTGGTGTTGCAGTCTTAACCTGCGCACTAACTCTCTGTGTAGCCCTAGATGTCACCGCTCAAGACTCAATCATCCACCAAGTCACAGATCATGACAGCTCTCGAAAATTCTCGAGTGGTAGTAACCTGCTCCTAGGAACCGAGAAAGAGTTCAAGATTTTCATGGAGAAATATGGGAAGAAGTATCCAACTAGAAAGGAGTACATGCACCGCCTCGGTGTTTTTGCCAAGAACATGATCAGAGCCGCCGAGCACCAAGCTCTGGATCCGACGGCGGTCCACGGCGTCACACCGTTCTCGGATCTGTCCGAGGAGGAGTTCGAGGGGATGTACACCGGAGTAAGAGGTGGGGCCGGCTTAAACGACGGCGGTGGCGGTGCAGAGAGTACGGTTGAGCTTATGGATGTTAGTGGGTTGCCTGAGAGTTTTGATTGGAGAGAGAAGGGAGCTGTTACTGAGGTCAAGATGCAGGGTGGTTGTGGTGCGTGCTGGGCCTTTAGCACAACAGGAGCTACTGAAGGAGCCAATTTCATTGCCACAGGGAAGCTTGTTAGTCTCAGTGAACAGCAGCTTGTGGACTGCGATCATGTGTGCGATGCAAAAGAGAAAGATGCGTGCGACCGTGGTTGTGGTGGCGGACTTATGACAAATGCCTACAAGTATCTAATTGAAGCAGGAGGGTTGCAGGATGAGGCTTCATACCCTTATACGGGGAAGAAGGGTGAATGCAAATTCAATCCTGAAAAGGTAGCTGTGAGAGTGGCCAATTTCACCAATATTCCACTTGATGAGAACCAAATTGCAGCGAACTTGGTCCACCATGGTCCTCTTGCCATTGGGTTGAATGCTATGTTCATGCAAACCTACATTGGTGGTGTATCATGCCCTCTTGTTTGTTTCAAGAGATGGGTGAACCACGGTGTTTTACTTGTTGGATACGGTGACAAGGGCTTCTCGATCCTCAGGCTGAGCAACAAACCGTACTGGATCATCAAGAATTCATGGAGCTCAAAATGGGGCGAACATGGTTATTACCGGCTTTGCCGAGGCCATGGCATGTGTGGGATGAATACTATGGTCTCTGCGGTTGTGACCAGTTCTAGATCGAGCATCCTAGCGGCATTTCCCGAGATGTATATATAA

Protein Analysis

394

Amino Acids

42.63

Weight (kDa)

6.14

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 65 - 121 1.6e-14 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 153 - 377 1.6e-71 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 67
Acc36I ACCTGC 2 cut(s) 71, 177
AccB7I CCANNNNNTGG 1 cut(s) 304
AccBSI CCGCTC 1 cut(s) 101
AciI CCGC 9 cut(s) 99, 253, 288, 317, 411, 417, 678, 1127, 1160
AclWI GGATC 5 cut(s) 302, 315, 351, 994, 1037
AcoI YGGCCR 2 cut(s) 3, 804
AcsI RAATTY 3 cut(s) 149, 773, 1039
AcuI CTGAAG 1 cut(s) 579
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 5 cut(s) 18, 245, 374, 430, 1025
AfiI CCNNNNNNNGG 3 cut(s) 304, 751, 752
AgsI TTSAA 5 cut(s) 196, 713, 778, 886, 943
AluBI AGCT 9 cut(s) 141, 302, 439, 491, 554, 589, 613, 794, 1050
AluI AGCT 9 cut(s) 141, 302, 439, 491, 554, 589, 613, 794, 1050
Alw21I GWGCWC 2 cut(s) 297, 1052
Alw26I GTCTC 2 cut(s) 602, 1126
AlwI GGATC 5 cut(s) 302, 315, 351, 994, 1037
Ama87I CYCGRG 2 cut(s) 154, 1169
AoxI GGCC 5 cut(s) 3, 393, 534, 804, 1090
ApeKI GCWGC 2 cut(s) 610, 845
ApoI RAATTY 3 cut(s) 149, 773, 1039
Asp700I GAANNNNTTC 1 cut(s) 191
AspA2I CCTAGG 1 cut(s) 175
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 6 cut(s) 8, 319, 393, 534, 856, 866
AsuHPI GGTGA 5 cut(s) 88, 776, 805, 964, 995
AvaI CYCGRG 2 cut(s) 154, 1169
AvaII GGWCC 4 cut(s) 8, 319, 856, 866
AvrII CCTAGG 1 cut(s) 175
AxyI CCTNAGG 1 cut(s) 1004
BalI TGGCCA 1 cut(s) 806
BamHI GGATCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 1052
Bbv12I GWGCWC 2 cut(s) 297, 1052
BbvI GCAGC 2 cut(s) 622, 857
BccI CCATC 1 cut(s) 942
BceAI ACGGC 3 cut(s) 330, 340, 424
BciVI GTATCC 2 cut(s) 237, 971
BclI TGATCA 1 cut(s) 279
BcoDI GTCTC 2 cut(s) 602, 1126
BfaI CTAG 5 cut(s) 89, 176, 234, 1143, 1157
BfuAI ACCTGC 2 cut(s) 71, 177
BfuI GTATCC 2 cut(s) 237, 971
BisI GCNGC 4 cut(s) 288, 611, 846, 1161
BlnI CCTAGG 1 cut(s) 175
BlpI GCTNAGC 1 cut(s) 1010
BlsI GCNGC 4 cut(s) 289, 612, 847, 1162
Bme18I GGWCC 4 cut(s) 8, 319, 856, 866
BmeT110I CYCGRG 2 cut(s) 154, 1169
BmgT120I GGNCC 6 cut(s) 8, 319, 393, 534, 856, 866
BmiI GGNNCC 4 cut(s) 181, 309, 394, 565
BmsI GCATC 4 cut(s) 498, 628, 643, 1161
BoxI GACNNNNGTC 1 cut(s) 317
Bpu1102I GCTNAGC 1 cut(s) 1010
BpuEI CTTGAG 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 1126
BsaJI CCNNGG 9 cut(s) 175, 256, 322, 351, 664, 862, 958, 1087, 1093
BsaWI WCCGGW 1 cut(s) 377
Bsc4I CCNNNNNNNGG 3 cut(s) 304, 751, 752
Bse118I RCCGGY 2 cut(s) 395, 1077
Bse1I ACTGG 2 cut(s) 1031, 1137
Bse21I CCTNAGG 1 cut(s) 1004
Bse3DI GCAATG 1 cut(s) 573
BseDI CCNNGG 9 cut(s) 175, 256, 322, 351, 664, 862, 958, 1087, 1093
BseGI GGATG 6 cut(s) 114, 375, 451, 736, 1113, 1152
BseLI CCNNNNNNNGG 3 cut(s) 304, 751, 752
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 5 cut(s) 453, 489, 613, 1001, 1018
BseNI ACTGG 2 cut(s) 1031, 1137
BseRI GAGGAG 2 cut(s) 368, 371
BseXI GCAGC 2 cut(s) 622, 857
BseYI CCCAGC 1 cut(s) 531
BsgI GTGCAG 1 cut(s) 441
Bsh1285I CGRYCG 1 cut(s) 664
BshFI GGCC 5 cut(s) 5, 395, 536, 806, 1092
BsiEI CGRYCG 1 cut(s) 664
BsiHKAI GWGCWC 2 cut(s) 297, 1052
BsiHKCI CYCGRG 2 cut(s) 154, 1169
BsiSI CCGG 4 cut(s) 6, 378, 396, 1078
BslI CCNNNNNNNGG 3 cut(s) 304, 751, 752
BsmAI GTCTC 2 cut(s) 602, 1126
BsmI GAATGC 2 cut(s) 773, 892
BsnI GGCC 5 cut(s) 5, 395, 536, 806, 1092
Bso31I GGTCTC 1 cut(s) 1126
BsoBI CYCGRG 2 cut(s) 154, 1169
Bsp1286I GDGCHC 2 cut(s) 297, 1052
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 8 cut(s) 130, 279, 307, 343, 625, 999, 1029, 1145
Bsp1720I GCTNAGC 1 cut(s) 1010
Bsp19I CCATGG 2 cut(s) 862, 1093
BspACI CCGC 9 cut(s) 99, 253, 288, 317, 411, 417, 678, 1127, 1160
BspANI GGCC 5 cut(s) 5, 395, 536, 806, 1092
BspCNI CTCAG 5 cut(s) 454, 490, 612, 1002, 1017
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 4 cut(s) 181, 309, 394, 565
BspMI ACCTGC 2 cut(s) 71, 177
BspPI GGATC 5 cut(s) 302, 315, 351, 994, 1037
BspTNI GGTCTC 1 cut(s) 1126
BsrBI CCGCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 573
BsrFI RCCGGY 2 cut(s) 395, 1077
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 2 cut(s) 1031, 1137
BssAI RCCGGY 2 cut(s) 395, 1077
BssECI CCNNGG 9 cut(s) 175, 256, 322, 351, 664, 862, 958, 1087, 1093
BssMI GATC 8 cut(s) 130, 279, 307, 343, 625, 999, 1029, 1145
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 3 cut(s) 175, 862, 1093
Bst4CI ACNGT 6 cut(s) 336, 433, 665, 962, 983, 1023
BstACI GRCGYC 1 cut(s) 327
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 397, 529, 658
BstDEI CTNAG 5 cut(s) 462, 498, 599, 1004, 1010
BstDSI CCRYGG 5 cut(s) 322, 664, 862, 958, 1093
BstF5I GGATG 6 cut(s) 114, 375, 451, 736, 1113, 1152
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 8 cut(s) 133, 282, 310, 346, 628, 1002, 1032, 1148
BstMAI GTCTC 2 cut(s) 602, 1126
BstMBI GATC 8 cut(s) 130, 279, 307, 343, 625, 999, 1029, 1145
BstMCI CGRYCG 1 cut(s) 664
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNSI RCATGY 2 cut(s) 250, 1102
BstPAI GACNNNNGTC 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 622, 857
BstX2I RGATCY 2 cut(s) 307, 343
BstYI RGATCY 2 cut(s) 307, 343
Bsu36I CCTNAGG 1 cut(s) 1004
BsuI GTATCC 2 cut(s) 237, 971
BsuRI GGCC 5 cut(s) 5, 395, 536, 806, 1092
BtgI CCRYGG 5 cut(s) 322, 664, 862, 958, 1093
BtgZI GCGATG 1 cut(s) 651
BtsCI GGATG 6 cut(s) 114, 375, 451, 736, 1113, 1152
BtsIMutI CAGTG 1 cut(s) 607
BveI ACCTGC 2 cut(s) 71, 177
Cac8I GCNNGC 3 cut(s) 397, 529, 658
CciI TCATGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 2 cut(s) 395, 1077
Cfr13I GGNCC 6 cut(s) 8, 319, 393, 534, 856, 866
CseI GACGC 1 cut(s) 316
Csp6I GTAC 5 cut(s) 17, 244, 373, 429, 1024
CviQI GTAC 5 cut(s) 17, 244, 373, 429, 1024
DdeI CTNAG 5 cut(s) 462, 498, 599, 1004, 1010
DpnI GATC 8 cut(s) 132, 281, 309, 345, 627, 1001, 1031, 1147
DpnII GATC 8 cut(s) 130, 279, 307, 343, 625, 999, 1029, 1145
EaeI YGGCCR 2 cut(s) 3, 804
EciI GGCGGA 1 cut(s) 693
Ecl136II GAGCTC 1 cut(s) 1050
Eco130I CCWWGG 3 cut(s) 175, 862, 1093
Eco24I GRGCYC 1 cut(s) 1052
Eco31I GGTCTC 1 cut(s) 1126
Eco47I GGWCC 4 cut(s) 8, 319, 856, 866
Eco53kI GAGCTC 1 cut(s) 1050
Eco57I CTGAAG 1 cut(s) 579
Eco81I CCTNAGG 1 cut(s) 1004
Eco88I CYCGRG 2 cut(s) 154, 1169
EcoICRI GAGCTC 1 cut(s) 1050
EcoRI GAATTC 1 cut(s) 1039
EcoT14I CCWWGG 3 cut(s) 175, 862, 1093
EcoT38I GRGCYC 1 cut(s) 1052
ErhI CCWWGG 3 cut(s) 175, 862, 1093
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 4 cut(s) 288, 611, 846, 1161
FokI GGATG 6 cut(s) 101, 382, 458, 743, 1120, 1139
FriOI GRGCYC 1 cut(s) 1052
Fsp4HI GCNGC 4 cut(s) 288, 611, 846, 1161
FspBI CTAG 5 cut(s) 89, 176, 234, 1143, 1157
FspI TGCGCA 1 cut(s) 67
GlaI GCGC 1 cut(s) 67
GluI GCNGC 4 cut(s) 288, 611, 846, 1161
GsaI CCCAGC 1 cut(s) 535
HaeIII GGCC 5 cut(s) 5, 395, 536, 806, 1092
HapII CCGG 4 cut(s) 6, 378, 396, 1078
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 327
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 1 cut(s) 107
HpaII CCGG 4 cut(s) 6, 378, 396, 1078
HphI GGTGA 5 cut(s) 88, 776, 805, 964, 995
Hpy166II GTNNAC 6 cut(s) 322, 375, 605, 619, 859, 955
Hpy188I TCNGA 4 cut(s) 284, 312, 343, 352
Hpy8I GTNNAC 6 cut(s) 322, 375, 605, 619, 859, 955
Hpy99I CGWCG 2 cut(s) 316, 410
HpyAV CCTTC 3 cut(s) 478, 554, 754
HpyCH4III ACNGT 6 cut(s) 336, 433, 665, 962, 983, 1023
HpyCH4V TGCA 9 cut(s) 53, 250, 422, 511, 641, 727, 771, 845, 901
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 5 cut(s) 462, 498, 599, 1004, 1010
Hsp92I GRCGYC 1 cut(s) 327
HspAI GCGC 1 cut(s) 66
KroI GCCGGC 1 cut(s) 395
KroNI GCCGGC 1 cut(s) 397
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 8 cut(s) 130, 279, 307, 343, 625, 999, 1029, 1145
LmnI GCTCC 5 cut(s) 177, 488, 551, 563, 1047
Lsp1109I GCAGC 2 cut(s) 622, 857
LweI GCATC 4 cut(s) 498, 628, 643, 1161
MaeI CTAG 5 cut(s) 89, 176, 234, 1143, 1157
MaeIII GTNAC 7 cut(s) 94, 124, 164, 328, 493, 983, 1132
MalI GATC 8 cut(s) 132, 281, 309, 345, 627, 1001, 1031, 1147
MbiI CCGCTC 1 cut(s) 101
MboI GATC 8 cut(s) 130, 279, 307, 343, 625, 999, 1029, 1145
MboII GAAGA 2 cut(s) 232, 769
MflI RGATCY 2 cut(s) 307, 343
MhlI GDGCHC 2 cut(s) 297, 1052
MlsI TGGCCA 1 cut(s) 806
MluCI AATT 7 cut(s) 149, 568, 708, 773, 808, 840, 1039
MluNI TGGCCA 1 cut(s) 806
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 3 cut(s) 254, 335, 955
Mox20I TGGCCA 1 cut(s) 806
MroNI GCCGGC 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 191
MscI TGGCCA 1 cut(s) 806
MseI TTAA 2 cut(s) 59, 401
Msp20I TGGCCA 1 cut(s) 806
MspI CCGG 4 cut(s) 6, 378, 396, 1078
Mva1269I GAATGC 2 cut(s) 773, 892
MwoI GCNNNNNNNGC 1 cut(s) 533
NaeI GCCGGC 1 cut(s) 397
NcoI CCATGG 2 cut(s) 862, 1093
NdeII GATC 8 cut(s) 130, 279, 307, 343, 625, 999, 1029, 1145
NgoMIV GCCGGC 1 cut(s) 395
NlaIV GGNNCC 4 cut(s) 181, 309, 394, 565
NmeAIII GCCGAG 2 cut(s) 316, 1112
NmuCI GTSAC 5 cut(s) 94, 124, 328, 983, 1132
NsbI TGCGCA 1 cut(s) 67
NspI RCATGY 2 cut(s) 250, 1102
PaeR7I CTCGAG 1 cut(s) 154
PagI TCATGA 1 cut(s) 133
PctI GAATGC 2 cut(s) 773, 892
PdiI GCCGGC 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 304
PkrI GCNGC 4 cut(s) 289, 612, 847, 1162
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PshAI GACNNNNGTC 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 1052
PspFI CCCAGC 1 cut(s) 531
PspN4I GGNNCC 4 cut(s) 181, 309, 394, 565
PspPI GGNCC 6 cut(s) 8, 319, 393, 534, 856, 866
PsuI RGATCY 2 cut(s) 307, 343
RsaI GTAC 5 cut(s) 18, 245, 374, 430, 1025
RsaNI GTAC 5 cut(s) 17, 244, 373, 429, 1024
SacI GAGCTC 1 cut(s) 1052
SaqAI TTAA 2 cut(s) 59, 401
SatI GCNGC 4 cut(s) 288, 611, 846, 1161
Sau3AI GATC 8 cut(s) 130, 279, 307, 343, 625, 999, 1029, 1145
Sau96I GGNCC 6 cut(s) 8, 319, 393, 534, 856, 866
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 2 cut(s) 297, 1052
SfaNI GCATC 4 cut(s) 498, 628, 643, 1161
Sfr274I CTCGAG 1 cut(s) 154
SinI GGWCC 4 cut(s) 8, 319, 856, 866
SlaI CTCGAG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 102, 154
SmoI CTYRAG 2 cut(s) 102, 154
Sse9I AATT 7 cut(s) 149, 568, 708, 773, 808, 840, 1039
SsiI CCGC 9 cut(s) 99, 253, 288, 317, 411, 417, 678, 1127, 1160
SspI AATATT 1 cut(s) 820
SspMI CTAG 5 cut(s) 89, 176, 234, 1143, 1157
SstI GAGCTC 1 cut(s) 1052
StyI CCWWGG 3 cut(s) 175, 862, 1093
TaaI ACNGT 6 cut(s) 336, 433, 665, 962, 983, 1023
TaqI TCGA 5 cut(s) 145, 155, 363, 998, 1148
TasI AATT 7 cut(s) 149, 568, 708, 773, 808, 840, 1039
TatI WGTACW 2 cut(s) 243, 372
TauI GCSGC 2 cut(s) 290, 1163
Tru1I TTAA 2 cut(s) 59, 401
Tru9I TTAA 2 cut(s) 59, 401
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 5 cut(s) 94, 124, 328, 983, 1132
TseI GCWGC 2 cut(s) 610, 845
Tsp45I GTSAC 5 cut(s) 94, 124, 328, 983, 1132
TspDTI ATGAA 6 cut(s) 193, 562, 729, 886, 1032, 1124
TspRI CASTG 1 cut(s) 607
Van91I CCANNNNNTGG 1 cut(s) 304
VpaK11BI GGWCC 4 cut(s) 8, 319, 856, 866
XapI RAATTY 3 cut(s) 149, 773, 1039
XbaI TCTAGA 1 cut(s) 1142
XceI RCATGY 2 cut(s) 250, 1102
XcmI CCANNNNNNNNNTGG 1 cut(s) 1100
XhoI CTCGAG 1 cut(s) 154
XmaJI CCTAGG 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 5 cut(s) 89, 176, 234, 1143, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.