Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008020

Physical Location & Seq

Genomic Coordinates Forward (+)

15481355 .. 15485615

Gene Structure 4261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18581.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGACCGGACCGCCTCTACCTCGACCCTTTCTAACGTGCTTGGTTGGTGTAGCAGTCTTAACCTGCGCACTAACCTTCTGTGTTGCCCTAGATGTCACCCCCCAAGACCCAATCATCCACCAAGTCACAGACCATGATACTAACAAGCTCCTTGGAACCGAGAAAGAGTTCAAGAGTTTCATGGAGAAGTATGAGAAGAAGTACCCTACTAGGAAGGAGTACATGCACCGGCTAGTTGTTTTTTCCAAGAACATGATCAGATCCGCCGAGCACCAAGCTCTGGATCCGACGGCGGTTCACGGCGTCACGCCGTTCTCGGATCTGGAGGAGGAGGAGTTCGAGAGGATGTACACCATTCCTCGAAAAGTTAAAAGGTGCGCCCGGCTTAACCAACGGCGGAGGCGGTACGGGGAGCACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

141

Amino Acids

16.28

Weight (kDa)

8.93

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	57 - 113	1.3e-13	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54940 AT3G54940
fragaria_vesca	FvH4_7g18550 FvH4_7g18550 FvH4_7g18550 FvH4_7g18581
malus_domestica	MD07G1169100.v1.1
prunus_persica	Prupe.2G207100_v2.0.a1
pyrus_communis	pycom07g16300
rosa_chinensis	RchiOBHm_Chr1g0362341 RchiOBHm_Chr3g0466551
rosa_laevigata	RLG00000032870
rosa_multiflora	Rmu_co8195178.1_g000001 Rmu_co8521771.1_g000001 Rmu_sc0003332.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054320 Rroxscaffold_4G00294240
rosa_rugosa	Rorug01G0297500
rosa_samantha	Rh1AG306400 Rh1BG269900 Rh1CG287400 Rh1DG300100 Rh3BG150800
rosa_wichuraiana	Rw1G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	280
AciI	CCGC	5 cut(s)	11, 264, 293, 397, 403
AclWI	GGATC	4 cut(s)	255, 278, 291, 327
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	4 cut(s)	203, 221, 350, 407
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	172
AloI	GAACNNNNNNTCC	2 cut(s)	320, 352
AluBI	AGCT	2 cut(s)	148, 278
AluI	AGCT	2 cut(s)	148, 278
Alw21I	GWGCWC	2 cut(s)	273, 417
AlwI	GGATC	4 cut(s)	255, 278, 291, 327
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	68, 380
AspS9I	GGNCC	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	283
Bbv12I	GWGCWC	2 cut(s)	273, 417
BceAI	ACGGC	4 cut(s)	295, 306, 316, 410
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	382
BfaI	CTAG	3 cut(s)	89, 210, 233
BfuAI	ACCTGC	1 cut(s)	71
Bme1390I	CCNGG	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	2 cut(s)	157, 285
BmrFI	CCNGG	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	382
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	114, 351
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseRI	GAGGAG	3 cut(s)	341, 344, 347
BsiHKAI	GWGCWC	2 cut(s)	273, 417
BsiSI	CCGG	3 cut(s)	6, 229, 382
BslI	CCNNNNNNNGG	1 cut(s)	280
Bsp1286I	GDGCHC	2 cut(s)	273, 417
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	255, 260, 283, 319
BspACI	CCGC	5 cut(s)	11, 264, 293, 397, 403
BspLI	GGNNCC	2 cut(s)	157, 285
BspMI	ACCTGC	1 cut(s)	71
BspPI	GGATC	4 cut(s)	255, 278, 291, 327
BsrFI	RCCGGY	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	4 cut(s)	255, 260, 283, 319
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	419
BstACI	GRCGYC	1 cut(s)	303
BstAUI	TGTACA	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	114, 351
BstHHI	GCGC	2 cut(s)	68, 380
BstKTI	GATC	4 cut(s)	258, 263, 286, 322
BstMBI	GATC	4 cut(s)	255, 260, 283, 319
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	380
BstX2I	RGATCY	3 cut(s)	260, 283, 319
BstYI	RGATCY	3 cut(s)	260, 283, 319
BtsCI	GGATG	2 cut(s)	114, 351
BveI	ACCTGC	1 cut(s)	71
CfoI	GCGC	2 cut(s)	68, 380
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	8
CpoI	CGGWCCG	1 cut(s)	8
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	4 cut(s)	202, 220, 349, 406
CspI	CGGWCCG	1 cut(s)	8
CviAII	CATG	4 cut(s)	134, 181, 223, 253
CviJI	RGCY	4 cut(s)	148, 232, 278, 385
CviKI_1	RGCY	4 cut(s)	148, 232, 278, 385
CviQI	GTAC	4 cut(s)	202, 220, 349, 406
DpnI	GATC	4 cut(s)	257, 262, 285, 321
DpnII	GATC	4 cut(s)	255, 260, 283, 319
EciI	GGCGGA	2 cut(s)	253, 412
Eco130I	CCWWGG	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	4 cut(s)	137, 184, 226, 256
FaiI	YATR	5 cut(s)	135, 182, 192, 224, 254
FatI	CATG	4 cut(s)	133, 180, 222, 252
FbaI	TGATCA	1 cut(s)	255
FokI	GGATG	2 cut(s)	101, 358
FspBI	CTAG	3 cut(s)	89, 210, 233
FspI	TGCGCA	1 cut(s)	67
GlaI	GCGC	2 cut(s)	67, 379
GsuI	CTGGAG	1 cut(s)	344
HapII	CCGG	3 cut(s)	6, 229, 382
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	2 cut(s)	68, 380
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	4 cut(s)	137, 184, 226, 256
Hin6I	GCGC	2 cut(s)	66, 378
HinP1I	GCGC	2 cut(s)	66, 378
HpaII	CCGG	3 cut(s)	6, 229, 382
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	298, 351
Hpy188I	TCNGA	3 cut(s)	260, 288, 319
Hpy188III	TCNNGA	4 cut(s)	172, 281, 323, 340
Hpy8I	GTNNAC	2 cut(s)	298, 351
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	85, 208
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	226
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	137, 184, 226, 256
HspAI	GCGC	2 cut(s)	66, 378
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	4 cut(s)	255, 260, 283, 319
LmnI	GCTCC	2 cut(s)	153, 412
LpnPI	CCDG	6 cut(s)	19, 76, 242, 266, 308, 395
MaeI	CTAG	3 cut(s)	89, 210, 233
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	94, 124, 304
MalI	GATC	4 cut(s)	257, 262, 285, 321
MboI	GATC	4 cut(s)	255, 260, 283, 319
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	3 cut(s)	260, 283, 319
MhlI	GDGCHC	2 cut(s)	273, 417
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	8 cut(s)	24, 30, 319, 322, 325, 336, 369, 393
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	3 cut(s)	59, 369, 387
MspI	CCGG	3 cut(s)	6, 229, 382
MspR9I	CCNGG	1 cut(s)	382
NciI	CCSGG	1 cut(s)	382
NdeII	GATC	4 cut(s)	255, 260, 283, 319
NlaIII	CATG	4 cut(s)	137, 184, 226, 256
NlaIV	GGNNCC	2 cut(s)	157, 285
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	3 cut(s)	94, 124, 304
NsbI	TGCGCA	1 cut(s)	67
NspI	RCATGY	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	167
PflMI	CCANNNNNTGG	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	157, 285
PspPI	GGNCC	1 cut(s)	8
PsuI	RGATCY	3 cut(s)	260, 283, 319
RsaI	GTAC	4 cut(s)	203, 221, 350, 407
RsaNI	GTAC	4 cut(s)	202, 220, 349, 406
Rsr2I	CGGWCCG	1 cut(s)	8
RsrII	CGGWCCG	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	59, 369, 387
Sau3AI	GATC	4 cut(s)	255, 260, 283, 319
Sau96I	GGNCC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	2 cut(s)	273, 417
SetI	ASST	7 cut(s)	22, 38, 65, 77, 150, 280, 377
SinI	GGWCC	1 cut(s)	8
SsiI	CCGC	5 cut(s)	11, 264, 293, 397, 403
SspMI	CTAG	3 cut(s)	89, 210, 233
StyD4I	CCNGG	1 cut(s)	380
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	3 cut(s)	22, 339, 361
TatI	WGTACW	2 cut(s)	219, 348
Tru1I	TTAA	3 cut(s)	59, 369, 387
Tru9I	TTAA	3 cut(s)	59, 369, 387
TseFI	GTSAC	3 cut(s)	94, 124, 304
Tsp45I	GTSAC	3 cut(s)	94, 124, 304
TspDTI	ATGAA	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	8
XceI	RCATGY	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	3 cut(s)	89, 210, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.