Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003332.1

Orthogroup ID

OG0008020

Physical Location & Seq

Genomic Coordinates Forward (+)

7706 .. 8387

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003332.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggagaaatatgggaagaaatatccaattagaaaggagtacatgcaccgccttggtgtttttgccaagaacatgatcagagccgccgagcaccaagctctggatccgatggcagtccacgatatcacaccgttctctgatctgtccgaggaggagttcgaggggatgtacactggcgtgagaggtgggcccggcttaaatgacggcagcggtggtgcagagagtacggttgagctcatggatgttagtgggttgcctgagagttttgattggagagagaagggagctgttactgaggtcaagatgcagattaaatccttatcgcgatcaagtgactgcacatatgctatagatgtgtctgggttggtcatatacagagacggagagaagatgcagagtttcgggccaaagccgagttcttgctttctggggatgaagatcagttcttgcttatggggacgaagaccagttctgatggaggcatgggcaatttgggaatttttccttagagatgggcccacaggagctgatgtggcttgccatgtaagcgagttaacggctgcagttgacggaggaatgatggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

195

Amino Acids

21.54

Weight (kDa)

5.09

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54940 AT3G54940
fragaria_vesca	FvH4_7g18550 FvH4_7g18550 FvH4_7g18550 FvH4_7g18581
malus_domestica	MD07G1169100.v1.1
prunus_persica	Prupe.2G207100_v2.0.a1
pyrus_communis	pycom07g16300
rosa_chinensis	RchiOBHm_Chr1g0362341 RchiOBHm_Chr3g0466551
rosa_laevigata	RLG00000032870
rosa_multiflora	Rmu_co8195178.1_g000001 Rmu_co8521771.1_g000001 Rmu_sc0003332.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054320 Rroxscaffold_4G00294240
rosa_rugosa	Rorug01G0297500
rosa_samantha	Rh1AG306400 Rh1BG269900 Rh1CG287400 Rh1DG300100 Rh3BG150800
rosa_wichuraiana	Rw1G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccII	CGCG	1 cut(s)	325
AciI	CCGC	3 cut(s)	49, 84, 210
AclWI	GGATC	2 cut(s)	98, 111
AcsI	RAATTY	1 cut(s)	497
AfaI	GTAC	3 cut(s)	41, 170, 226
AfiI	CCNNNNNNNGG	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	400, 432
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	4 cut(s)	98, 235, 287, 527
AluI	AGCT	4 cut(s)	98, 235, 287, 527
Alw21I	GWGCWC	2 cut(s)	93, 237
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	98, 111
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	3 cut(s)	188, 404, 515
ApaI	GGGCCC	2 cut(s)	192, 519
ApeKI	GCWGC	2 cut(s)	207, 560
ApoI	RAATTY	1 cut(s)	497
AspS9I	GGNCC	5 cut(s)	188, 189, 404, 515, 516
AsuC2I	CCSGG	1 cut(s)	192
BaeGI	GKGCMC	2 cut(s)	192, 519
BamHI	GGATCC	1 cut(s)	103
BanII	GRGCYC	3 cut(s)	192, 237, 519
BbsI	GAAGAC	1 cut(s)	469
Bbv12I	GWGCWC	2 cut(s)	93, 237
BbvI	GCAGC	2 cut(s)	219, 547
BccI	CCATC	4 cut(s)	103, 469, 506, 574
BceAI	ACGGC	2 cut(s)	220, 573
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	372
BfmI	CTRYAG	2 cut(s)	348, 561
BisI	GCNGC	3 cut(s)	84, 208, 561
BlsI	GCNGC	3 cut(s)	85, 209, 562
Bme1390I	CCNGG	1 cut(s)	192
BmgT120I	GGNCC	5 cut(s)	188, 189, 404, 515, 516
BmiI	GGNNCC	3 cut(s)	105, 190, 517
BmrFI	CCNGG	1 cut(s)	192
BmsI	GCATC	2 cut(s)	294, 381
BpiI	GAAGAC	1 cut(s)	469
BpuMI	CCSGG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	52, 147
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	178, 467
Bse8I	GATNNNNATC	1 cut(s)	437
BseDI	CCNNGG	2 cut(s)	52, 147
BseGI	GGATG	3 cut(s)	171, 247, 438
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	249, 285
BseNI	ACTGG	2 cut(s)	178, 467
BseRI	GAGGAG	2 cut(s)	164, 167
BseSI	GKGCMC	2 cut(s)	192, 519
BseXI	GCAGC	2 cut(s)	219, 547
BsgI	GTGCAG	2 cut(s)	237, 322
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	3 cut(s)	190, 406, 517
BsiHKAI	GWGCWC	2 cut(s)	93, 237
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	372
BsmBI	CGTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	471
BsnI	GGCC	3 cut(s)	190, 406, 517
Bsp120I	GGGCCC	2 cut(s)	188, 515
Bsp1286I	GDGCHC	4 cut(s)	93, 192, 237, 519
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	75, 103, 139, 326, 438
Bsp68I	TCGCGA	1 cut(s)	325
BspACI	CCGC	3 cut(s)	49, 84, 210
BspANI	GGCC	3 cut(s)	190, 406, 517
BspCNI	CTCAG	2 cut(s)	250, 286
BspFNI	CGCG	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	105, 190, 517
BspMAI	CTGCAG	1 cut(s)	565
BspPI	GGATC	2 cut(s)	98, 111
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	178, 467
BssECI	CCNNGG	2 cut(s)	52, 147
BssMI	GATC	5 cut(s)	75, 103, 139, 326, 438
BssT1I	CCWWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	132, 229
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	538
BstDEI	CTNAG	3 cut(s)	258, 294, 506
BstF5I	GGATG	3 cut(s)	171, 247, 438
BstFNI	CGCG	1 cut(s)	325
BstKTI	GATC	5 cut(s)	78, 106, 142, 329, 441
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	5 cut(s)	75, 103, 139, 326, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	533, 546
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	2 cut(s)	348, 561
BstSLI	GKGCMC	2 cut(s)	192, 519
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	219, 547
BstV2I	GAAGAC	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	190, 406, 517
BtsCI	GGATG	3 cut(s)	171, 247, 438
BtsIMutI	CAGTG	1 cut(s)	171
BtuMI	TCGCGA	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	538
CaiI	CAGNNNCTG	1 cut(s)	527
Cfr13I	GGNCC	5 cut(s)	188, 189, 404, 515, 516
Csp6I	GTAC	3 cut(s)	40, 169, 225
CviAII	CATG	5 cut(s)	43, 73, 238, 483, 542
CviQI	GTAC	3 cut(s)	40, 169, 225
DdeI	CTNAG	3 cut(s)	258, 294, 506
DpnI	GATC	5 cut(s)	77, 105, 141, 328, 440
DpnII	GATC	5 cut(s)	75, 103, 139, 326, 438
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	3 cut(s)	192, 237, 519
Eco32I	GATATC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	3 cut(s)	192, 237, 519
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	372
FaeI	CATG	5 cut(s)	46, 76, 241, 486, 545
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	5 cut(s)	42, 72, 237, 482, 541
FauNDI	CATATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	84, 208, 561
FokI	GGATG	3 cut(s)	178, 254, 445
FriOI	GRGCYC	3 cut(s)	192, 237, 519
Fsp4HI	GCNGC	3 cut(s)	84, 208, 561
GluI	GCNGC	3 cut(s)	84, 208, 561
HaeIII	GGCC	3 cut(s)	190, 406, 517
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	5 cut(s)	46, 76, 241, 486, 545
HincII	GTYRAC	2 cut(s)	555, 568
HindII	GTYRAC	2 cut(s)	555, 568
HpaI	GTTAAC	1 cut(s)	555
HpaII	CCGG	1 cut(s)	192
Hpy166II	GTNNAC	4 cut(s)	118, 171, 555, 568
Hpy188I	TCNGA	5 cut(s)	80, 108, 139, 148, 474
Hpy188III	TCNNGA	3 cut(s)	101, 301, 324
Hpy8I	GTNNAC	4 cut(s)	118, 171, 555, 568
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	132, 229
HpyCH4V	TGCA	6 cut(s)	46, 218, 307, 339, 394, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	533, 546
HpyF3I	CTNAG	3 cut(s)	258, 294, 506
Hsp92II	CATG	5 cut(s)	46, 76, 241, 486, 545
Ksp22I	TGATCA	1 cut(s)	75
KspAI	GTTAAC	1 cut(s)	555
Kzo9I	GATC	5 cut(s)	75, 103, 139, 326, 438
LmnI	GCTCC	2 cut(s)	284, 524
LpnPI	CCDG	8 cut(s)	86, 159, 205, 270, 345, 413, 480, 507
Lsp1109I	GCAGC	2 cut(s)	219, 547
LweI	GCATC	2 cut(s)	294, 381
MaeIII	GTNAC	2 cut(s)	289, 332
MalI	GATC	5 cut(s)	77, 105, 141, 328, 440
MboI	GATC	5 cut(s)	75, 103, 139, 326, 438
MboII	GAAGA	4 cut(s)	28, 400, 448, 474
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	4 cut(s)	93, 192, 237, 519
MluCI	AATT	3 cut(s)	27, 489, 497
MnlI	CCTC	7 cut(s)	142, 145, 154, 176, 289, 472, 566
MseI	TTAA	3 cut(s)	197, 312, 554
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	2 cut(s)	533, 546
NciI	CCSGG	1 cut(s)	192
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	5 cut(s)	75, 103, 139, 326, 438
NlaIII	CATG	5 cut(s)	46, 76, 241, 486, 545
NlaIV	GGNNCC	3 cut(s)	105, 190, 517
NmeAIII	GCCGAG	2 cut(s)	112, 438
NmuCI	GTSAC	1 cut(s)	332
NruI	TCGCGA	1 cut(s)	325
NspI	RCATGY	1 cut(s)	46
OliI	CACNNNNGTG	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	85, 209, 562
Psp124BI	GAGCTC	1 cut(s)	237
PspN4I	GGNNCC	3 cut(s)	105, 190, 517
PspOMI	GGGCCC	2 cut(s)	188, 515
PspPI	GGNCC	5 cut(s)	188, 189, 404, 515, 516
PstI	CTGCAG	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	103
RruI	TCGCGA	1 cut(s)	325
RsaI	GTAC	3 cut(s)	41, 170, 226
RsaNI	GTAC	3 cut(s)	40, 169, 225
RseI	CAYNNNNRTG	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	3 cut(s)	197, 312, 554
SatI	GCNGC	3 cut(s)	84, 208, 561
Sau3AI	GATC	5 cut(s)	75, 103, 139, 326, 438
Sau96I	GGNCC	5 cut(s)	188, 189, 404, 515, 516
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	4 cut(s)	93, 192, 237, 519
SetI	ASST	6 cut(s)	100, 187, 237, 289, 300, 529
SfaNI	GCATC	2 cut(s)	294, 381
SfcI	CTRYAG	2 cut(s)	348, 561
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	27, 489, 497
SsiI	CCGC	3 cut(s)	49, 84, 210
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	132, 229
TaqI	TCGA	1 cut(s)	159
TasI	AATT	3 cut(s)	27, 489, 497
TatI	WGTACW	2 cut(s)	39, 168
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	3 cut(s)	197, 312, 554
Tru9I	TTAA	3 cut(s)	197, 312, 554
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	2 cut(s)	207, 560
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	449
TspGWI	ACGGA	2 cut(s)	396, 585
TspRI	CASTG	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	497
XceI	RCATGY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.