Rroxscaffold_4G00294240

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
14382879 .. 14384762
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294240.1

Sequence Viewer

Length: 1152 bp
ATGGCCGGACCACCTCTACCTCCATCAATTCTAATGTGCTTGGTTGGTGTTGCAGTCTTAACCTGCGCACTAACTTTCTGTGTTGCCCTAGATGTCACCGCTCAAGACTCAATCATCCACCAAGTCACAGATCATTACAGCTCTCGAAAATTCTCGAGTGGTAGTAACCTCCTTGGAATCGAGAAAGAGTTCAAGATTTTCATGGAGAAATATGGGAAGAAGTATCCAACTAGAAAGGAGTACATGCACCGCCTCGGTGTTTTTGCCAAGAACATGATCAGAGCCGCCGAGCACCAAGCTCTGGATCCGACGGCGGTCCACGGCGTCACACCATTCTCGGATCTTTCCGAGGAGGAGTTCGAGGGGATGTACACCGGCGTAAGAGGTGGGGCCGGCTTAAAAGACGGCGGTGGCGGTGCAGAGAGTACAGTTGAGCTTATGGATGTTAGTGGGTTGCCTGAGAGTTTTGATTGGAGAGAGAAGGGAGCTGTTACTGAGGTCAAGATGCAGGGTGGTTGTGGTGCGTGCTGGGCCTTTAGCACAACAGGAGCTACTGAAGGAGCCAATTTCATTGCCACAGGGAAGCTTGTTAGTCTCAGTGAACAGCAGCTTGTGGACTGCGATCATGTGTGCGATGCAAAAGAGAAAGATGCGTGCGACCGTGGTTGTGGTGGCGGACTTATGACAAATGCCTACAAGTATCTAATTGAAGCAGGAGGGTTGCAGGATGAGGCTTCATACCCTTATACGGGGAAGAAGGGTGAATGCAAATTCAATCCTGAAAAGGTAGCTGTGAGAGTGGCGAATTTCACCAATATTCCACTTGATGAGAACCAAATTGCAGCGAACTTGGTGCACCATGGTCCTCTTGCCATTGGGTTGAATGCTATGTTCATGCAAACCTACATTGGTGGGGTATCATGCCCTCTTGTTTGTTTCAAGAGATGGGTGAACCACGGTGTTTTACTTGTTGGATACGGTGACAAGGGCTTCTCGATCCTCAGGCTGAGCAACAAACCGTACTGGATCATCAAGAATTCATGGAGCTCAAAATGGGGCGAACATGGTTATTACCGGCTTTGCCGAGGCCATGGCATGTGTGGGATGAATACTATGGTCTCTGCGGTTGTGACCAGTTCTAGAGCATCCTAG

Protein Analysis

383

Amino Acids

41.47

Weight (kDa)

6.6

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 64 - 120 1.5e-14 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 152 - 376 1.5e-71 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 101
AciI CCGC 8 cut(s) 99, 250, 285, 314, 408, 414, 675, 1124
AclWI GGATC 5 cut(s) 299, 312, 348, 991, 1034
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 149, 770, 805, 1036
AcuI CTGAAG 1 cut(s) 576
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 4 cut(s) 242, 371, 427, 1022
AfiI CCNNNNNNNGG 3 cut(s) 301, 748, 749
AgsI TTSAA 5 cut(s) 193, 710, 775, 883, 940
AluBI AGCT 9 cut(s) 141, 299, 436, 488, 551, 586, 610, 791, 1047
AluI AGCT 9 cut(s) 141, 299, 436, 488, 551, 586, 610, 791, 1047
Alw21I GWGCWC 3 cut(s) 294, 858, 1049
Alw26I GTCTC 2 cut(s) 599, 1123
Alw44I GTGCAC 1 cut(s) 854
AlwI GGATC 5 cut(s) 299, 312, 348, 991, 1034
Ama87I CYCGRG 1 cut(s) 154
AoxI GGCC 4 cut(s) 3, 390, 531, 1087
ApaLI GTGCAC 1 cut(s) 854
ApeKI GCWGC 2 cut(s) 607, 842
ApoI RAATTY 4 cut(s) 149, 770, 805, 1036
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 5 cut(s) 8, 316, 390, 531, 863
AsuHPI GGTGA 5 cut(s) 88, 773, 802, 961, 992
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 3 cut(s) 8, 316, 863
AxyI CCTNAGG 1 cut(s) 1001
BaeGI GKGCMC 1 cut(s) 858
BamHI GGATCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 1049
Bbv12I GWGCWC 3 cut(s) 294, 858, 1049
BbvI GCAGC 2 cut(s) 619, 854
BccI CCATC 2 cut(s) 31, 939
BceAI ACGGC 3 cut(s) 327, 337, 421
BcgI CGANNNNNNTGC 2 cut(s) 835, 869
BciVI GTATCC 2 cut(s) 234, 968
BclI TGATCA 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 599, 1123
BfaI CTAG 4 cut(s) 89, 231, 1140, 1150
BfuAI ACCTGC 1 cut(s) 71
BfuI GTATCC 2 cut(s) 234, 968
BisI GCNGC 3 cut(s) 285, 608, 843
BlpI GCTNAGC 1 cut(s) 1007
BlsI GCNGC 3 cut(s) 286, 609, 844
Bme18I GGWCC 3 cut(s) 8, 316, 863
BmeT110I CYCGRG 1 cut(s) 154
BmgT120I GGNCC 5 cut(s) 8, 316, 390, 531, 863
BmiI GGNNCC 3 cut(s) 306, 391, 562
BmsI GCATC 3 cut(s) 495, 625, 640
BoxI GACNNNNGTC 1 cut(s) 314
Bpu1102I GCTNAGC 1 cut(s) 1007
BpuEI CTTGAG 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 1123
BsaJI CCNNGG 9 cut(s) 172, 253, 319, 348, 661, 859, 955, 1084, 1090
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 748, 749
Bse118I RCCGGY 3 cut(s) 374, 392, 1074
Bse1I ACTGG 2 cut(s) 1028, 1134
Bse21I CCTNAGG 1 cut(s) 1001
Bse3DI GCAATG 1 cut(s) 570
BseDI CCNNGG 9 cut(s) 172, 253, 319, 348, 661, 859, 955, 1084, 1090
BseGI GGATG 6 cut(s) 114, 372, 448, 733, 1110, 1145
BseLI CCNNNNNNNGG 3 cut(s) 301, 748, 749
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 5 cut(s) 450, 486, 610, 998, 1015
BseNI ACTGG 2 cut(s) 1028, 1134
BseRI GAGGAG 2 cut(s) 365, 368
BseSI GKGCMC 1 cut(s) 858
BseXI GCAGC 2 cut(s) 619, 854
BseYI CCCAGC 1 cut(s) 528
BsgI GTGCAG 1 cut(s) 438
Bsh1285I CGRYCG 1 cut(s) 661
BshFI GGCC 4 cut(s) 5, 392, 533, 1089
BsiEI CGRYCG 1 cut(s) 661
BsiHKAI GWGCWC 3 cut(s) 294, 858, 1049
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 4 cut(s) 6, 375, 393, 1075
BslI CCNNNNNNNGG 3 cut(s) 301, 748, 749
BsmAI GTCTC 2 cut(s) 599, 1123
BsmI GAATGC 2 cut(s) 770, 889
BsnI GGCC 4 cut(s) 5, 392, 533, 1089
Bso31I GGTCTC 1 cut(s) 1123
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 3 cut(s) 294, 858, 1049
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 7 cut(s) 130, 276, 304, 340, 622, 996, 1026
Bsp1720I GCTNAGC 1 cut(s) 1007
Bsp19I CCATGG 2 cut(s) 859, 1090
BspACI CCGC 8 cut(s) 99, 250, 285, 314, 408, 414, 675, 1124
BspANI GGCC 4 cut(s) 5, 392, 533, 1089
BspCNI CTCAG 5 cut(s) 451, 487, 609, 999, 1014
BspLI GGNNCC 3 cut(s) 306, 391, 562
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 5 cut(s) 299, 312, 348, 991, 1034
BspTNI GGTCTC 1 cut(s) 1123
BsrBI CCGCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 570
BsrFI RCCGGY 3 cut(s) 374, 392, 1074
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 2 cut(s) 1028, 1134
BssAI RCCGGY 3 cut(s) 374, 392, 1074
BssECI CCNNGG 9 cut(s) 172, 253, 319, 348, 661, 859, 955, 1084, 1090
BssMI GATC 7 cut(s) 130, 276, 304, 340, 622, 996, 1026
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 3 cut(s) 172, 859, 1090
Bst4CI ACNGT 5 cut(s) 430, 662, 959, 980, 1020
BstACI GRCGYC 1 cut(s) 324
BstAUI TGTACA 1 cut(s) 369
BstC8I GCNNGC 3 cut(s) 394, 526, 655
BstDEI CTNAG 5 cut(s) 459, 495, 596, 1001, 1007
BstDSI CCRYGG 5 cut(s) 319, 661, 859, 955, 1090
BstF5I GGATG 6 cut(s) 114, 372, 448, 733, 1110, 1145
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 7 cut(s) 133, 279, 307, 343, 625, 999, 1029
BstMAI GTCTC 2 cut(s) 599, 1123
BstMBI GATC 7 cut(s) 130, 276, 304, 340, 622, 996, 1026
BstMCI CGRYCG 1 cut(s) 661
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNSI RCATGY 2 cut(s) 247, 1099
BstPAI GACNNNNGTC 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 858
BstV1I GCAGC 2 cut(s) 619, 854
BstX2I RGATCY 2 cut(s) 304, 340
BstYI RGATCY 2 cut(s) 304, 340
Bsu36I CCTNAGG 1 cut(s) 1001
BsuI GTATCC 2 cut(s) 234, 968
BsuRI GGCC 4 cut(s) 5, 392, 533, 1089
BtgI CCRYGG 5 cut(s) 319, 661, 859, 955, 1090
BtgZI GCGATG 1 cut(s) 648
BtsCI GGATG 6 cut(s) 114, 372, 448, 733, 1110, 1145
BtsIMutI CAGTG 1 cut(s) 604
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 3 cut(s) 394, 526, 655
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 3 cut(s) 374, 392, 1074
Cfr13I GGNCC 5 cut(s) 8, 316, 390, 531, 863
CseI GACGC 1 cut(s) 313
Csp6I GTAC 4 cut(s) 241, 370, 426, 1021
CviQI GTAC 4 cut(s) 241, 370, 426, 1021
DdeI CTNAG 5 cut(s) 459, 495, 596, 1001, 1007
DpnI GATC 7 cut(s) 132, 278, 306, 342, 624, 998, 1028
DpnII GATC 7 cut(s) 130, 276, 304, 340, 622, 996, 1026
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 690
Ecl136II GAGCTC 1 cut(s) 1047
Eco130I CCWWGG 3 cut(s) 172, 859, 1090
Eco24I GRGCYC 1 cut(s) 1049
Eco31I GGTCTC 1 cut(s) 1123
Eco47I GGWCC 3 cut(s) 8, 316, 863
Eco53kI GAGCTC 1 cut(s) 1047
Eco57I CTGAAG 1 cut(s) 576
Eco81I CCTNAGG 1 cut(s) 1001
Eco88I CYCGRG 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 1047
EcoRI GAATTC 1 cut(s) 1036
EcoT14I CCWWGG 3 cut(s) 172, 859, 1090
EcoT38I GRGCYC 1 cut(s) 1049
ErhI CCWWGG 3 cut(s) 172, 859, 1090
FbaI TGATCA 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 285, 608, 843
FokI GGATG 6 cut(s) 101, 379, 455, 740, 1117, 1132
FriOI GRGCYC 1 cut(s) 1049
Fsp4HI GCNGC 3 cut(s) 285, 608, 843
FspBI CTAG 4 cut(s) 89, 231, 1140, 1150
FspI TGCGCA 1 cut(s) 67
GlaI GCGC 1 cut(s) 67
GluI GCNGC 3 cut(s) 285, 608, 843
GsaI CCCAGC 1 cut(s) 532
HaeIII GGCC 4 cut(s) 5, 392, 533, 1089
HapII CCGG 4 cut(s) 6, 375, 393, 1075
HgaI GACGC 1 cut(s) 313
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 324
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 2 cut(s) 107, 177
HpaII CCGG 4 cut(s) 6, 375, 393, 1075
HphI GGTGA 5 cut(s) 88, 773, 802, 961, 992
Hpy166II GTNNAC 6 cut(s) 319, 372, 602, 616, 856, 952
Hpy188I TCNGA 4 cut(s) 281, 309, 340, 349
Hpy8I GTNNAC 6 cut(s) 319, 372, 602, 616, 856, 952
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 3 cut(s) 475, 551, 751
HpyCH4III ACNGT 5 cut(s) 430, 662, 959, 980, 1020
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 5 cut(s) 459, 495, 596, 1001, 1007
Hsp92I GRCGYC 1 cut(s) 324
HspAI GCGC 1 cut(s) 66
KroI GCCGGC 1 cut(s) 392
KroNI GCCGGC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 7 cut(s) 130, 276, 304, 340, 622, 996, 1026
LmnI GCTCC 4 cut(s) 485, 548, 560, 1044
Lsp1109I GCAGC 2 cut(s) 619, 854
LweI GCATC 3 cut(s) 495, 625, 640
MaeI CTAG 4 cut(s) 89, 231, 1140, 1150
MaeIII GTNAC 7 cut(s) 94, 124, 164, 325, 490, 980, 1129
MalI GATC 7 cut(s) 132, 278, 306, 342, 624, 998, 1028
MbiI CCGCTC 1 cut(s) 101
MboI GATC 7 cut(s) 130, 276, 304, 340, 622, 996, 1026
MboII GAAGA 2 cut(s) 229, 766
MflI RGATCY 2 cut(s) 304, 340
MhlI GDGCHC 3 cut(s) 294, 858, 1049
MluCI AATT 8 cut(s) 27, 149, 565, 705, 770, 805, 837, 1036
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 3 cut(s) 251, 332, 952
MroNI GCCGGC 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 2 cut(s) 59, 398
MspI CCGG 4 cut(s) 6, 375, 393, 1075
Mva1269I GAATGC 2 cut(s) 770, 889
MwoI GCNNNNNNNGC 1 cut(s) 530
NaeI GCCGGC 1 cut(s) 394
NcoI CCATGG 2 cut(s) 859, 1090
NdeII GATC 7 cut(s) 130, 276, 304, 340, 622, 996, 1026
NgoMIV GCCGGC 1 cut(s) 392
NlaIV GGNNCC 3 cut(s) 306, 391, 562
NmeAIII GCCGAG 2 cut(s) 313, 1109
NmuCI GTSAC 5 cut(s) 94, 124, 325, 980, 1129
NsbI TGCGCA 1 cut(s) 67
NspI RCATGY 2 cut(s) 247, 1099
PaeR7I CTCGAG 1 cut(s) 154
PctI GAATGC 2 cut(s) 770, 889
PdiI GCCGGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 177
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 3 cut(s) 286, 609, 844
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PshAI GACNNNNGTC 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 1049
PspFI CCCAGC 1 cut(s) 528
PspN4I GGNNCC 3 cut(s) 306, 391, 562
PspPI GGNCC 5 cut(s) 8, 316, 390, 531, 863
PsuI RGATCY 2 cut(s) 304, 340
RsaI GTAC 4 cut(s) 242, 371, 427, 1022
RsaNI GTAC 4 cut(s) 241, 370, 426, 1021
SacI GAGCTC 1 cut(s) 1049
SaqAI TTAA 2 cut(s) 59, 398
SatI GCNGC 3 cut(s) 285, 608, 843
Sau3AI GATC 7 cut(s) 130, 276, 304, 340, 622, 996, 1026
Sau96I GGNCC 5 cut(s) 8, 316, 390, 531, 863
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 3 cut(s) 294, 858, 1049
SfaNI GCATC 3 cut(s) 495, 625, 640
Sfr274I CTCGAG 1 cut(s) 154
SgrAI CRCCGGYG 1 cut(s) 374
SinI GGWCC 3 cut(s) 8, 316, 863
SlaI CTCGAG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 102, 154
SmoI CTYRAG 2 cut(s) 102, 154
Sse9I AATT 8 cut(s) 27, 149, 565, 705, 770, 805, 837, 1036
SsiI CCGC 8 cut(s) 99, 250, 285, 314, 408, 414, 675, 1124
SspI AATATT 1 cut(s) 817
SspMI CTAG 4 cut(s) 89, 231, 1140, 1150
SstI GAGCTC 1 cut(s) 1049
StyI CCWWGG 3 cut(s) 172, 859, 1090
TaaI ACNGT 5 cut(s) 430, 662, 959, 980, 1020
TaqI TCGA 5 cut(s) 145, 155, 180, 360, 995
TasI AATT 8 cut(s) 27, 149, 565, 705, 770, 805, 837, 1036
TatI WGTACW 3 cut(s) 240, 369, 425
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 2 cut(s) 59, 398
Tru9I TTAA 2 cut(s) 59, 398
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 5 cut(s) 94, 124, 325, 980, 1129
TseI GCWGC 2 cut(s) 607, 842
Tsp45I GTSAC 5 cut(s) 94, 124, 325, 980, 1129
TspDTI ATGAA 6 cut(s) 190, 559, 726, 883, 1029, 1121
TspRI CASTG 1 cut(s) 604
Van91I CCANNNNNTGG 1 cut(s) 301
VneI GTGCAC 1 cut(s) 854
VpaK11BI GGWCC 3 cut(s) 8, 316, 863
XapI RAATTY 4 cut(s) 149, 770, 805, 1036
XbaI TCTAGA 1 cut(s) 1139
XceI RCATGY 2 cut(s) 247, 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 1097
XhoI CTCGAG 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 4 cut(s) 89, 231, 1140, 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.