Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8195178.1

Orthogroup ID

OG0008020

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 475

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8195178.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

agcggtggtgcagagagtacggttgagctcatggatgttagtgggttgcctgagagttttgattggagagagaagggagctgttactgaggtcaagatgcagattaaatccttatcgcgatcaagtgactgcacatatgctatagatgtgtctgggttggtcatatacagagacggagagaagatgcagagtttcgggccaaagccgagttcttgctttctggggatgaagatcagttcttgcttatggggacgaagaccagttctgatggaggcatgggcaatttgggaatttttccttagagatgggcccacaggagctgatgtggcttgccatgtaagcgagttaacggctgcagttgacggaggaatgatggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

126

Amino Acids

13.72

Weight (kDa)

4.76

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54940 AT3G54940
fragaria_vesca	FvH4_7g18550 FvH4_7g18550 FvH4_7g18550 FvH4_7g18581
malus_domestica	MD07G1169100.v1.1
prunus_persica	Prupe.2G207100_v2.0.a1
pyrus_communis	pycom07g16300
rosa_chinensis	RchiOBHm_Chr1g0362341 RchiOBHm_Chr3g0466551
rosa_laevigata	RLG00000032870
rosa_multiflora	Rmu_co8195178.1_g000001 Rmu_co8521771.1_g000001 Rmu_sc0003332.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054320 Rroxscaffold_4G00294240
rosa_rugosa	Rorug01G0297500
rosa_samantha	Rh1AG306400 Rh1BG269900 Rh1CG287400 Rh1DG300100 Rh3BG150800
rosa_wichuraiana	Rw1G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	118
AciI	CCGC	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	193, 225
AluBI	AGCT	3 cut(s)	28, 80, 320
AluI	AGCT	3 cut(s)	28, 80, 320
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	165
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	197, 308
ApaI	GGGCCC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	290
AspS9I	GGNCC	3 cut(s)	197, 308, 309
BaeGI	GKGCMC	1 cut(s)	312
BanII	GRGCYC	2 cut(s)	30, 312
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	3 cut(s)	262, 299, 367
BceAI	ACGGC	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	165
BfmI	CTRYAG	2 cut(s)	141, 354
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
BmgT120I	GGNCC	3 cut(s)	197, 308, 309
BmiI	GGNNCC	1 cut(s)	310
BmsI	GCATC	2 cut(s)	87, 174
BpiI	GAAGAC	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bse1I	ACTGG	1 cut(s)	260
Bse8I	GATNNNNATC	1 cut(s)	230
BseGI	GGATG	2 cut(s)	40, 231
BseJI	GATNNNNATC	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	42, 78
BseNI	ACTGG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	1 cut(s)	340
BsgI	GTGCAG	2 cut(s)	30, 115
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	199, 310
BsiHKAI	GWGCWC	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	199, 310
Bsp120I	GGGCCC	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	30, 312
Bsp143I	GATC	2 cut(s)	119, 231
Bsp68I	TCGCGA	1 cut(s)	118
BspACI	CCGC	1 cut(s)	3
BspANI	GGCC	2 cut(s)	199, 310
BspCNI	CTCAG	2 cut(s)	43, 79
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	119, 231
Bst4CI	ACNGT	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	3 cut(s)	51, 87, 299
BstF5I	GGATG	2 cut(s)	40, 231
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	2 cut(s)	122, 234
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	2 cut(s)	119, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 339
BstSFI	CTRYAG	2 cut(s)	141, 354
BstSLI	GKGCMC	1 cut(s)	312
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	199, 310
BtsCI	GGATG	2 cut(s)	40, 231
BtuMI	TCGCGA	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	331
CaiI	CAGNNNCTG	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	197, 308, 309
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	3 cut(s)	31, 276, 335
CviJI	RGCY	8 cut(s)	28, 80, 199, 205, 310, 320, 329, 353
CviKI_1	RGCY	8 cut(s)	28, 80, 199, 205, 310, 320, 329, 353
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	3 cut(s)	51, 87, 299
DpnI	GATC	2 cut(s)	121, 233
DpnII	GATC	2 cut(s)	119, 231
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	2 cut(s)	30, 312
Eco53kI	GAGCTC	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	28
EcoT38I	GRGCYC	2 cut(s)	30, 312
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	3 cut(s)	34, 279, 338
FaiI	YATR	9 cut(s)	32, 136, 138, 143, 164, 166, 247, 277, 336
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	3 cut(s)	30, 275, 334
FauNDI	CATATG	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	2 cut(s)	47, 238
FriOI	GRGCYC	2 cut(s)	30, 312
Fsp4HI	GCNGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	199, 310
Hin1II	CATG	3 cut(s)	34, 279, 338
HincII	GTYRAC	2 cut(s)	348, 361
HindII	GTYRAC	2 cut(s)	348, 361
HpaI	GTTAAC	1 cut(s)	348
Hpy166II	GTNNAC	2 cut(s)	348, 361
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	2 cut(s)	94, 117
Hpy8I	GTNNAC	2 cut(s)	348, 361
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	5 cut(s)	11, 100, 132, 187, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 339
HpyF3I	CTNAG	3 cut(s)	51, 87, 299
Hsp92II	CATG	3 cut(s)	34, 279, 338
KspAI	GTTAAC	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	119, 231
LmnI	GCTCC	2 cut(s)	77, 317
LpnPI	CCDG	5 cut(s)	63, 138, 206, 273, 300
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	2 cut(s)	87, 174
MaeIII	GTNAC	2 cut(s)	82, 125
MalI	GATC	2 cut(s)	121, 233
MboI	GATC	2 cut(s)	119, 231
MboII	GAAGA	3 cut(s)	193, 241, 267
MhlI	GDGCHC	2 cut(s)	30, 312
MluCI	AATT	2 cut(s)	282, 290
MnlI	CCTC	3 cut(s)	82, 265, 359
MseI	TTAA	2 cut(s)	105, 347
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	326, 339
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	2 cut(s)	119, 231
NlaIII	CATG	3 cut(s)	34, 279, 338
NlaIV	GGNNCC	1 cut(s)	310
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	125
NruI	TCGCGA	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	310
PspOMI	GGGCCC	1 cut(s)	308
PspPI	GGNCC	3 cut(s)	197, 308, 309
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	320
RruI	TCGCGA	1 cut(s)	118
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	105, 347
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	2 cut(s)	119, 231
Sau96I	GGNCC	3 cut(s)	197, 308, 309
SduI	GDGCHC	2 cut(s)	30, 312
SetI	ASST	4 cut(s)	30, 82, 93, 322
SfaNI	GCATC	2 cut(s)	87, 174
SfcI	CTRYAG	2 cut(s)	141, 354
Sse9I	AATT	2 cut(s)	282, 290
SsiI	CCGC	1 cut(s)	3
SstI	GAGCTC	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	22
TasI	AATT	2 cut(s)	282, 290
Tru1I	TTAA	2 cut(s)	105, 347
Tru9I	TTAA	2 cut(s)	105, 347
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	242
TspGWI	ACGGA	2 cut(s)	189, 378
XapI	RAATTY	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.