Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007025

Physical Location & Seq

Genomic Coordinates Forward (+)

20527063 .. 20529331

Gene Structure 2269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGTTTTCTCATCTCTTCCAGTGAATCAGTTCGATTCCCAAAATTGGCAGCAGCAAGGGAACCAACATCAGCTAGAATGTGTCACAACTGACCAGAACCCTAATAATTACTTACGGCAGCTCTCATCACCACCGACTTCTCAGGTTGCAGGTTCGAGTCAAGCTAGAGTGAATTCAATGGTGGAACGTGCTCGGATCGCAAAAGTCCCATTGCCTGAAGCAGCTCTAAATTGCCCTAGATGTGACTCAACCAATACTAAGTTCTGTTACTTCAATAACTATAGCCTTACTCAACCTCGCCATTTCTGCAAAACATGTCGTCGCTATTGGACACGTGGCGGTTCCTTGAGGAATGTTCCTGTTGGAGGAGGCTTTAGGAGGAACAAGAGAAGCAAATCCAGATCGAAATCTACGGTCGTGGTCTCGACTGATAATACTACTAGTACTTCATCACTTACTTCTCGCCCAAGTTACTCAAACCCTAGCAAGTTTCATAGCTACGGTCAAATCCCGGAGTTTAATTCCAACTTGCCCATCTTGCCTCCTCTCCAAAGCCTTGGAGATTACAATTCAAGCAACACTGGATTAGATTTTGGTGGAACTCAAATAAGCAACATGATAAGTGGTATGAGTTCTAGTGGTGGGATCTTGGATGCATGGAGAATACCTCCATCACAACAAGCTCAGCAATTCCCTTTCTTGATCAACACTACCGGATTGGTGCAATCTTCAAACGCGTTATATCCATTACTAGAAGGCGGGGTTAGCGCCACGCAAACAAGAAATGTGAAGGCGGAAGAGAATGATCAGGATCGGGGTAGGGATGGGGATGGAGTGAATAACTTATCAAGAAACTTTTTGGGTAATATCAACATAAACTCAGGCAGGAACGAGGAATACACATCATGGGGAGGTAACAGTTCTTGGACCGGTTTCACCTCCAACAACTCAACAGGCCATCTCTCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

323

Amino Acids

35.52

Weight (kDa)

9.43

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	75 - 130	2.1e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55370 AT3G55370 AT3G55370
fragaria_vesca	FvH4_7g22180 FvH4_7g22180 FvH4_7g22180
malus_domestica	MD00G1177000.v1.1 MD00G1177100.v1.1 MD01G1126700.v1.1 MD07G1197500.v1.1
prunus_persica	Prupe.2G233600_v2.0.a1 Prupe.2G233600_v2.0.a1
pyrus_communis	pycom01g15240 pycom07g18480
rosa_chinensis	RchiOBHm_Chr1g0366541
rosa_laevigata	RLG00000027338
rosa_multiflora	Rmu_ssc0000250.1_g000026
rosa_roxburghii	Rroxscaffold_4G00289840 Rroxscaffold_4G00290100
rosa_rugosa	Rorug01G0330700
rosa_samantha	Rh1AG338600 Rh1BG300300 Rh1CG315400 Rh1DG332100
rosa_wichuraiana	Rw1G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AccII	CGCG	1 cut(s)	737
AciI	CCGC	3 cut(s)	339, 759, 794
AclWI	GGATC	3 cut(s)	203, 653, 819
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	237
AcvI	CACGTG	1 cut(s)	335
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	2 cut(s)	45, 365
AflIII	ACRYGT	3 cut(s)	314, 332, 735
AgeI	ACCGGT	1 cut(s)	929
AgsI	TTSAA	4 cut(s)	177, 274, 573, 732
AhlI	ACTAGT	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	6 cut(s)	73, 121, 164, 224, 498, 683
AluI	AGCT	6 cut(s)	73, 121, 164, 224, 498, 683
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	3 cut(s)	203, 653, 819
AoxI	GGCC	1 cut(s)	955
ApeKI	GCWGC	4 cut(s)	49, 52, 118, 221
ApoI	RAATTY	1 cut(s)	172
AsiGI	ACCGGT	1 cut(s)	929
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	770
AspS9I	GGNCC	1 cut(s)	927
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	120, 928
AvaII	GGWCC	1 cut(s)	927
BbrPI	CACGTG	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	4 cut(s)	61, 64, 130, 233
BccI	CCATC	5 cut(s)	542, 679, 818, 824, 966
BceAI	ACGGC	1 cut(s)	131
BclI	TGATCA	2 cut(s)	702, 805
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	427
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	7 cut(s)	74, 165, 237, 441, 483, 636, 752
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	771
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	4 cut(s)	50, 53, 119, 222
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	4 cut(s)	51, 54, 120, 223
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	927
BmgT120I	GGNCC	1 cut(s)	927
BmiI	GGNNCC	2 cut(s)	62, 343
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	1 cut(s)	643
BplI	GAGNNNNNCTC	2 cut(s)	652, 684
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	367
BpuMI	CCSGG	1 cut(s)	512
BsaAI	YACGTR	1 cut(s)	335
BsaBI	GATNNNNATC	2 cut(s)	406, 810
BsaI	GGTCTC	1 cut(s)	427
BsaJI	CCNNGG	1 cut(s)	556
BsaWI	WCCGGW	2 cut(s)	713, 929
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 365
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	2 cut(s)	20, 586
Bse3DI	GCAATG	1 cut(s)	209
Bse8I	GATNNNNATC	2 cut(s)	406, 810
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	3 cut(s)	658, 829, 835
BseJI	GATNNNNATC	2 cut(s)	406, 810
BseLI	CCNNNNNNNGG	2 cut(s)	45, 365
BseMI	GCAATG	1 cut(s)	209
BseMII	CTCAG	3 cut(s)	155, 698, 894
BseNI	ACTGG	2 cut(s)	20, 586
BseRI	GAGGAG	2 cut(s)	381, 534
BseXI	GCAGC	4 cut(s)	61, 64, 130, 233
Bsh1236I	CGCG	1 cut(s)	737
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	957
BshTI	ACCGGT	1 cut(s)	929
BsiEI	CGRYCG	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	3 cut(s)	512, 714, 930
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	45, 365
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	957
Bso31I	GGTCTC	1 cut(s)	427
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	6 cut(s)	195, 401, 645, 702, 805, 811
Bsp1720I	GCTNAGC	1 cut(s)	684
BspACI	CCGC	3 cut(s)	339, 759, 794
BspANI	GGCC	1 cut(s)	957
BspCNI	CTCAG	3 cut(s)	154, 697, 893
BspFNI	CGCG	1 cut(s)	737
BspLI	GGNNCC	2 cut(s)	62, 343
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	3 cut(s)	203, 653, 819
BspTNI	GGTCTC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	929
BsrI	ACTGG	2 cut(s)	20, 586
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	6 cut(s)	195, 401, 645, 702, 805, 811
BssT1I	CCWWGG	1 cut(s)	556
Bst4CI	ACNGT	3 cut(s)	415, 503, 920
Bst6I	CTCTTC	2 cut(s)	21, 792
BstBAI	YACGTR	1 cut(s)	335
BstDEI	CTNAG	4 cut(s)	141, 258, 684, 880
BstENI	CCTNNNNNAGG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	658, 829, 835
BstFNI	CGCG	1 cut(s)	737
BstH2I	RGCGCY	1 cut(s)	771
BstHHI	GCGC	1 cut(s)	770
BstKTI	GATC	6 cut(s)	198, 404, 648, 705, 808, 814
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	6 cut(s)	195, 401, 645, 702, 805, 811
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 306, 538, 765
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	737
BstV1I	GCAGC	4 cut(s)	61, 64, 130, 233
BstX2I	RGATCY	1 cut(s)	645
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	957
BtsCI	GGATG	3 cut(s)	658, 829, 835
BtsIMutI	CAGTG	2 cut(s)	27, 579
BveI	ACCTGC	1 cut(s)	140
CfoI	GCGC	1 cut(s)	770
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	1 cut(s)	927
Csp6I	GTAC	1 cut(s)	444
CspAI	ACCGGT	1 cut(s)	929
CviAII	CATG	4 cut(s)	315, 616, 657, 906
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	4 cut(s)	141, 258, 684, 880
DpnI	GATC	6 cut(s)	197, 403, 647, 704, 807, 813
DpnII	GATC	6 cut(s)	195, 401, 645, 702, 805, 811
Eam1104I	CTCTTC	2 cut(s)	21, 792
EarI	CTCTTC	2 cut(s)	21, 792
EciI	GGCGGA	1 cut(s)	809
Eco130I	CCWWGG	1 cut(s)	556
Eco31I	GGTCTC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	927
Eco57I	CTGAAG	1 cut(s)	237
Eco72I	CACGTG	1 cut(s)	335
EcoNI	CCTNNNNNAGG	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	556
EcoT22I	ATGCAT	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	4 cut(s)	318, 619, 660, 909
FaiI	YATR	9 cut(s)	282, 316, 495, 617, 629, 658, 742, 875, 907
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	4 cut(s)	314, 615, 656, 905
FauI	CCCGC	1 cut(s)	752
FbaI	TGATCA	2 cut(s)	702, 805
Fnu4HI	GCNGC	4 cut(s)	50, 53, 119, 222
FokI	GGATG	3 cut(s)	665, 836, 842
Fsp4HI	GCNGC	4 cut(s)	50, 53, 119, 222
FspBI	CTAG	7 cut(s)	74, 165, 237, 441, 483, 636, 752
GlaI	GCGC	1 cut(s)	769
GluI	GCNGC	4 cut(s)	50, 53, 119, 222
HaeII	RGCGCY	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	957
HapII	CCGG	3 cut(s)	512, 714, 930
HhaI	GCGC	1 cut(s)	770
Hin1II	CATG	4 cut(s)	318, 619, 660, 909
Hin6I	GCGC	1 cut(s)	768
HinP1I	GCGC	1 cut(s)	768
HinfI	GANTC	4 cut(s)	25, 35, 157, 245
HpaII	CCGG	3 cut(s)	512, 714, 930
HphI	GGTGA	2 cut(s)	120, 928
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	5 cut(s)	399, 424, 700, 809, 849
Hpy99I	CGWCG	1 cut(s)	324
HpyAV	CCTTC	2 cut(s)	749, 784
HpyCH4III	ACNGT	3 cut(s)	415, 503, 920
HpyCH4IV	ACGT	2 cut(s)	187, 334
HpyCH4V	TGCA	4 cut(s)	149, 309, 656, 724
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 306, 538, 765
HpyF3I	CTNAG	4 cut(s)	141, 258, 684, 880
HpySE526I	ACGT	2 cut(s)	187, 334
Hsp92II	CATG	4 cut(s)	318, 619, 660, 909
HspAI	GCGC	1 cut(s)	768
Ksp22I	TGATCA	2 cut(s)	702, 805
Kzo9I	GATC	6 cut(s)	195, 401, 645, 702, 805, 811
Lsp1109I	GCAGC	4 cut(s)	61, 64, 130, 233
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	7 cut(s)	74, 165, 237, 441, 483, 636, 752
MaeII	ACGT	2 cut(s)	187, 334
MaeIII	GTNAC	5 cut(s)	82, 242, 266, 470, 914
MalI	GATC	6 cut(s)	197, 403, 647, 704, 807, 813
MboI	GATC	6 cut(s)	195, 401, 645, 702, 805, 811
MboII	GAAGA	3 cut(s)	8, 720, 809
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	7 cut(s)	43, 106, 172, 229, 520, 568, 689
MluI	ACGCGT	1 cut(s)	735
MlyI	GAGTC	2 cut(s)	166, 239
MmeI	TCCRAC	3 cut(s)	343, 549, 966
Mph1103I	ATGCAT	1 cut(s)	658
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	519
MspI	CCGG	3 cut(s)	512, 714, 930
MspR9I	CCNGG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	737
MwoI	GCNNNNNNNGC	4 cut(s)	197, 306, 538, 765
NciI	CCSGG	1 cut(s)	512
NdeII	GATC	6 cut(s)	195, 401, 645, 702, 805, 811
NlaIII	CATG	4 cut(s)	318, 619, 660, 909
NlaIV	GGNNCC	2 cut(s)	62, 343
NmuCI	GTSAC	2 cut(s)	82, 242
NsiI	ATGCAT	1 cut(s)	658
NspI	RCATGY	1 cut(s)	318
PciI	ACATGT	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	25, 35
PfoI	TCCNGGA	1 cut(s)	510
PinAI	ACCGGT	1 cut(s)	929
PkrI	GCNGC	4 cut(s)	51, 54, 120, 223
PleI	GAGTC	2 cut(s)	165, 239
PmaCI	CACGTG	1 cut(s)	335
PmlI	CACGTG	1 cut(s)	335
PpsI	GAGTC	2 cut(s)	165, 239
Ppu21I	YACGTR	1 cut(s)	335
PscI	ACATGT	1 cut(s)	314
PspCI	CACGTG	1 cut(s)	335
PspN4I	GGNNCC	2 cut(s)	62, 343
PspPI	GGNCC	1 cut(s)	927
PsrI	GAACNNNNNNTAC	2 cut(s)	881, 913
PsuI	RGATCY	1 cut(s)	645
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	4 cut(s)	50, 53, 119, 222
Sau3AI	GATC	6 cut(s)	195, 401, 645, 702, 805, 811
Sau96I	GGNCC	1 cut(s)	927
ScaI	AGTACT	1 cut(s)	445
SchI	GAGTC	2 cut(s)	166, 239
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	643
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	927
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	7 cut(s)	43, 106, 172, 229, 520, 568, 689
SsiI	CCGC	3 cut(s)	339, 759, 794
SspMI	CTAG	7 cut(s)	74, 165, 237, 441, 483, 636, 752
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	3 cut(s)	415, 503, 920
TaiI	ACGT	2 cut(s)	190, 337
TaqI	TCGA	4 cut(s)	33, 155, 404, 425
TasI	AATT	7 cut(s)	43, 106, 172, 229, 520, 568, 689
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	2 cut(s)	25, 35
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	2 cut(s)	27, 586
TseFI	GTSAC	2 cut(s)	82, 242
TseI	GCWGC	4 cut(s)	49, 52, 118, 221
Tsp45I	GTSAC	2 cut(s)	82, 242
TspDTI	ATGAA	2 cut(s)	438, 482
TspRI	CASTG	2 cut(s)	27, 586
VpaK11BI	GGWCC	1 cut(s)	927
XagI	CCTNNNNNAGG	1 cut(s)	363
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	7 cut(s)	74, 165, 237, 441, 483, 636, 752
ZrmI	AGTACT	1 cut(s)	445
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.