Rh1DG332100

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007025
Physical Location & Seq
Forward (+)
55659516 .. 55661394
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG332100.1

Sequence Viewer

Length: 915 bp
ATGTCTGATCTTGCCAGACAGGCCAAGTTGCCGCAGCCCGAGACAGCCCTAAAATGCCCTCGATGCGAATCCACAAACACCAAGTTTTGCTACTTCAACAATTACAGCCTGACGCAGCCGCGCCACTTCTGCAAGACCTGTCGGCGCTACTGGACCCGAGGAGGAGCGCTGAGAAGTGTGCCGGTCGGAGGAGGCTGCAGAAGGAACAAAAGGAGCAAAAGGTCAAAGTCACCAGCGTCGGCATCAGCAGCAGATCATCATCATCAGCGCCAAGGCGGAGCTGGTTCGAGCTCCAGCACAGTTTCCAACTCCAACAGCTGCAGTACTAGTGAAAATATCTTAGGCCATTTGGCTCCTCCACCACATCAGTTTCCCTTTCTGCCCTCTTTACATCATCTAAGTGATTATAGTTCCGGCGGCTTAAGTTTCGGGGGGATTCAACAACCTTCTGGTGTTGAATTCCATAGTCAGAATATTGGTGCTAGTGGAAATAGTGGTGGTGTTGGGTCCATCTTGTCAACTGGGCTGGCTGAGCATTGGAGATCATCACTTCAGCATCATCAAGTTCAACAAGGGCAGCAATTTCCTTTCTTGGCTAATTTGGAGCCACCAAGTAGTCATGGCTTATACCAGTTTGAAGGTAATCAAAATAATGCTCACGATACAGCAAGCTATGGAAAAGGAGCTGGTCAGCTCCTTTCTAAGCCATTAGTGGATTCAAGCATTGGGGCTACTCAAGTGGCTAATGTGAAAATGGAAGAAAGCCAAGCATTGAATATGTCAAGAAATTTTTTGGGTAGTCTTGGAAATGATCATCATCAGCAATACTGGGGTGGTACTACTGCTGCTGGTGGCATTAATAATGCTTGGACTGATCTTTCAGGTTTCACTTCTTCTACCAGTCATCTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

304

Amino Acids

32.56

Weight (kDa)

9.24

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 16 - 71 3.1e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 913
AccII CGCG 1 cut(s) 121
AciI CCGC 4 cut(s) 32, 119, 276, 417
AcsI RAATTY 2 cut(s) 458, 787
AcuI CTGAAG 1 cut(s) 536
AfaI GTAC 2 cut(s) 325, 838
AfeI AGCGCT 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 188
AflII CTTAAG 1 cut(s) 421
AgsI TTSAA 7 cut(s) 97, 440, 458, 569, 638, 720, 775
AhlI ACTAGT 1 cut(s) 326
AluBI AGCT 6 cut(s) 281, 291, 318, 672, 686, 694
AluI AGCT 6 cut(s) 281, 291, 318, 672, 686, 694
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 35
Ama87I CYCGRG 2 cut(s) 38, 156
Aor51HI AGCGCT 1 cut(s) 168
AoxI GGCC 2 cut(s) 21, 343
ApeKI GCWGC 7 cut(s) 34, 115, 195, 248, 318, 577, 845
ApoI RAATTY 2 cut(s) 458, 787
AseI ATTAAT 1 cut(s) 858
AspLEI GCGC 4 cut(s) 123, 147, 169, 270
AspS9I GGNCC 2 cut(s) 153, 507
AsuHPI GGTGA 1 cut(s) 222
AvaI CYCGRG 2 cut(s) 38, 156
AvaII GGWCC 2 cut(s) 153, 507
BanII GRGCYC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 7 cut(s) 46, 127, 182, 260, 305, 589, 832
BccI CCATC 1 cut(s) 518
BclI TGATCA 1 cut(s) 811
BcoDI GTCTC 1 cut(s) 35
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 2 cut(s) 327, 483
BfmI CTRYAG 2 cut(s) 196, 319
BfoI RGCGCY 3 cut(s) 148, 170, 271
BfrI CTTAAG 1 cut(s) 421
BglI GCCNNNNNGGC 1 cut(s) 20
BlpI GCTNAGC 1 cut(s) 531
BmcAI AGTACT 1 cut(s) 325
Bme18I GGWCC 2 cut(s) 153, 507
BmeT110I CYCGRG 2 cut(s) 38, 156
BmgT120I GGNCC 2 cut(s) 153, 507
BmiI GGNNCC 4 cut(s) 155, 354, 508, 606
BmrI ACTGGG 2 cut(s) 531, 838
BmsI GCATC 3 cut(s) 53, 251, 565
BmuI ACTGGG 2 cut(s) 531, 838
BpmI CTGGAG 1 cut(s) 277
Bpu1102I GCTNAGC 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 720
BsaBI GATNNNNATC 3 cut(s) 67, 258, 816
BsaJI CCNNGG 2 cut(s) 157, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 5 cut(s) 155, 526, 631, 833, 900
Bse8I GATNNNNATC 3 cut(s) 67, 258, 816
BseDI CCNNGG 2 cut(s) 157, 271
BseJI GATNNNNATC 3 cut(s) 67, 258, 816
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 161, 522
BseNI ACTGG 5 cut(s) 155, 526, 631, 833, 900
BseRI GAGGAG 4 cut(s) 174, 177, 204, 345
BseXI GCAGC 7 cut(s) 46, 127, 182, 260, 305, 589, 832
Bsh1236I CGCG 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 2 cut(s) 23, 345
BsiEI CGRYCG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 293
BsiHKCI CYCGRG 2 cut(s) 38, 156
BsiSI CCGG 2 cut(s) 182, 414
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 2 cut(s) 23, 345
BsoBI CYCGRG 2 cut(s) 38, 156
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 5 cut(s) 7, 253, 542, 811, 874
Bsp1720I GCTNAGC 1 cut(s) 531
BspACI CCGC 4 cut(s) 32, 119, 276, 417
BspANI GGCC 2 cut(s) 23, 345
BspCNI CTCAG 2 cut(s) 162, 523
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 4 cut(s) 155, 354, 508, 606
BspMAI CTGCAG 2 cut(s) 200, 323
BspTI CTTAAG 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 181
BsrI ACTGG 5 cut(s) 155, 526, 631, 833, 900
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 157, 271
BssMI GATC 5 cut(s) 7, 253, 542, 811, 874
BssT1I CCWWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 301
BstAFI CTTAAG 1 cut(s) 421
BstC8I GCNNGC 2 cut(s) 528, 670
BstDEI CTNAG 5 cut(s) 170, 340, 398, 531, 702
BstFNI CGCG 1 cut(s) 121
BstH2I RGCGCY 3 cut(s) 148, 170, 271
BstHHI GCGC 4 cut(s) 123, 147, 169, 270
BstKTI GATC 5 cut(s) 10, 256, 545, 814, 877
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 5 cut(s) 7, 253, 542, 811, 874
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 5 cut(s) 20, 63, 129, 248, 532
BstSFI CTRYAG 2 cut(s) 196, 319
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 7 cut(s) 46, 127, 182, 260, 305, 589, 832
BsuRI GGCC 2 cut(s) 23, 345
Cac8I GCNNGC 2 cut(s) 528, 670
CfoI GCGC 4 cut(s) 123, 147, 169, 270
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 153, 507
CseI GACGC 2 cut(s) 121, 225
Csp6I GTAC 2 cut(s) 324, 837
CviAII CATG 1 cut(s) 620
CviQI GTAC 2 cut(s) 324, 837
DdeI CTNAG 5 cut(s) 170, 340, 398, 531, 702
DpnI GATC 5 cut(s) 9, 255, 544, 813, 876
DpnII GATC 5 cut(s) 7, 253, 542, 811, 874
EciI GGCGGA 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 293
Eco47I GGWCC 2 cut(s) 153, 507
Eco47III AGCGCT 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 291
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 2 cut(s) 38, 156
EcoICRI GAGCTC 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 623
FaiI YATR 7 cut(s) 408, 465, 621, 628, 675, 779, 913
FatI CATG 1 cut(s) 619
FbaI TGATCA 1 cut(s) 811
FriOI GRGCYC 1 cut(s) 293
FspBI CTAG 2 cut(s) 327, 483
GlaI GCGC 4 cut(s) 122, 146, 168, 269
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 3 cut(s) 148, 170, 271
HaeIII GGCC 2 cut(s) 23, 345
HapII CCGG 2 cut(s) 182, 414
HgaI GACGC 2 cut(s) 121, 225
HhaI GCGC 4 cut(s) 123, 147, 169, 270
Hin1II CATG 1 cut(s) 623
Hin6I GCGC 4 cut(s) 121, 145, 167, 268
HinP1I GCGC 4 cut(s) 121, 145, 167, 268
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HinfI GANTC 3 cut(s) 68, 436, 716
HpaII CCGG 2 cut(s) 182, 414
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 519
Hpy188I TCNGA 3 cut(s) 7, 188, 471
Hpy188III TCNNGA 2 cut(s) 659, 783
Hpy8I GTNNAC 1 cut(s) 519
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 3 cut(s) 195, 456, 632
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 3 cut(s) 132, 198, 321
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 63, 129, 248, 532
HpyF3I CTNAG 5 cut(s) 170, 340, 398, 531, 702
Hsp92II CATG 1 cut(s) 623
HspAI GCGC 4 cut(s) 121, 145, 167, 268
Ksp22I TGATCA 1 cut(s) 811
Kzo9I GATC 5 cut(s) 7, 253, 542, 811, 874
LmnI GCTCC 8 cut(s) 164, 213, 278, 296, 358, 604, 683, 699
Lsp1109I GCAGC 7 cut(s) 46, 127, 182, 260, 305, 589, 832
LweI GCATC 3 cut(s) 53, 251, 565
MaeI CTAG 2 cut(s) 327, 483
MaeIII GTNAC 1 cut(s) 228
MalI GATC 5 cut(s) 9, 255, 544, 813, 876
MboI GATC 5 cut(s) 7, 253, 542, 811, 874
MboII GAAGA 2 cut(s) 770, 885
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 5 cut(s) 100, 458, 581, 598, 787
MmeI TCCRAC 3 cut(s) 166, 330, 336
MnlI CCTC 7 cut(s) 69, 152, 155, 182, 185, 366, 394
MseI TTAA 2 cut(s) 422, 858
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 318
MspCI CTTAAG 1 cut(s) 421
MspI CCGG 2 cut(s) 182, 414
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 5 cut(s) 20, 63, 129, 248, 532
NdeII GATC 5 cut(s) 7, 253, 542, 811, 874
NlaIII CATG 1 cut(s) 623
NlaIV GGNNCC 4 cut(s) 155, 354, 508, 606
NmuCI GTSAC 1 cut(s) 228
PfeI GAWTC 3 cut(s) 68, 436, 716
PshBI ATTAAT 1 cut(s) 858
PsiI TTATAA 1 cut(s) 913
Psp124BI GAGCTC 1 cut(s) 293
PspN4I GGNNCC 4 cut(s) 155, 354, 508, 606
PspPI GGNCC 2 cut(s) 153, 507
PstI CTGCAG 2 cut(s) 200, 323
PvuII CAGCTG 1 cut(s) 318
RsaI GTAC 2 cut(s) 325, 838
RsaNI GTAC 2 cut(s) 324, 837
RseI CAYNNNNRTG 1 cut(s) 399
SacI GAGCTC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 422, 858
Sau3AI GATC 5 cut(s) 7, 253, 542, 811, 874
Sau96I GGNCC 2 cut(s) 153, 507
ScaI AGTACT 1 cut(s) 325
SduI GDGCHC 1 cut(s) 293
SfaNI GCATC 3 cut(s) 53, 251, 565
SfcI CTRYAG 2 cut(s) 196, 319
SinI GGWCC 2 cut(s) 153, 507
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 2 cut(s) 421, 735
SmoI CTYRAG 2 cut(s) 421, 735
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 5 cut(s) 100, 458, 581, 598, 787
SsiI CCGC 4 cut(s) 32, 119, 276, 417
SspI AATATT 1 cut(s) 475
SspMI CTAG 2 cut(s) 327, 483
SstI GAGCTC 1 cut(s) 293
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 301
TaqI TCGA 2 cut(s) 61, 287
TasI AATT 5 cut(s) 100, 458, 581, 598, 787
TatI WGTACW 1 cut(s) 323
TauI GCSGC 3 cut(s) 34, 121, 420
TfiI GAWTC 3 cut(s) 68, 436, 716
Tru1I TTAA 2 cut(s) 422, 858
Tru9I TTAA 2 cut(s) 422, 858
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 7 cut(s) 34, 115, 195, 248, 318, 577, 845
Tsp45I GTSAC 1 cut(s) 228
Vha464I CTTAAG 1 cut(s) 421
VpaK11BI GGWCC 2 cut(s) 153, 507
VspI ATTAAT 1 cut(s) 858
XapI RAATTY 2 cut(s) 458, 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XspI CTAG 2 cut(s) 327, 483
ZrmI AGTACT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.