FvH4_7g22180

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007025
Physical Location & Seq
Forward (+)
17545456 .. 17547605
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22180.t2

Sequence Viewer

Length: 1110 bp
ATGGTTTTCTCATCCATTCCCGGCTACCTGGATCCACCCAATAACTGGCAGCAACAGCAATCCACTCATCATCATCAGCAACAAGGAGGTGGCACGGATCAGAATCATTCTCATCTTCTTCCGCCGCCACCACCATCTTCTAGAGATGGTGGTAACGGCGGAGCAGGCACGATTAGACCTGGATCCATGTCTGATCGTGCTAGACAGGCCAAGTTGCCACAGCCCGAGACAGCCCTAAAATGTCCCCGATGCGAATCCACAAACACCAAGTTTTGCTACTTCAACAATTACAGCCTGACGCAACCGCGCCACTTCTGCAAGACCTGCCGGCGCTACTGGACCCGAGGAGGAGCACTGAGAAGCGTGCCGGTCGGAGGAGGCTGCAGAAGGAACAAAAGAAGCAAAAGATCAAAGTCACCAGCATCTGCATCAGCAGCAGATCATCATCAGCGCCAAGGGGGAGCTGGTTCGAGCTCGAGCACTGTTTCTAACTCCAACAGCTGCAGTACTAGTGAAAATCTCTTAGGCCATTTGGCTCCTCCTCCACCACATCAATTTCCTTTTCTGCCCTCTTTACATCATCTAAGTGACTATAATTCCGGCGGCTTAAGTTTCGGGGGAATTCAACAACAACCTTCTGGTGTTGAATTTCATAGTCAGAATATTGGTGCTAGTGGAAGTAGTAGTGGTGGTATTGGGTCTATTTTGTCAACTGGCCTTGCTGAGCATTGGAGATCATCACTTCAGCATCATCAGGTTCAACAAGGGCAGCAATTTCCTTTCGTGGCTAATTTGGAGCCACCAAGTAGTCATGGCTTATACCAGTTTGAAGGTAATCAAAATAATAATGCTCAGGATACAGGAACTTATGGAAGAGGAGGTGCTCAGCTACTTTCAAAGGCATTAGTGGATTCAAGCATCGGGGCTACTCAGATGGCTAATGTGAAAATGGAAGAAAGCCAAGCACTGAATATGTCAAGAAACTTTTTGGGCAGTCTTGGAAACGATCATCATCAGCAATACTGGAGTAGTACTACTAGTGCTGGAGGTATTAATAATGCCTGGACTGATCTTTCAGGTTTCACTTCTTCTACCAGTCATCTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

370

Amino Acids

39.54

Weight (kDa)

9.24

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 16 - 71 3.2e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1108
Acc36I ACCTGC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 45
AccII CGCG 1 cut(s) 307
AciI CCGC 5 cut(s) 122, 125, 159, 305, 603
AclWI GGATC 5 cut(s) 26, 39, 105, 177, 190
AcsI RAATTY 2 cut(s) 621, 647
AcuI CTGAAG 1 cut(s) 728
AfaI GTAC 2 cut(s) 508, 1033
AfiI CCNNNNNNNGG 2 cut(s) 45, 374
AflII CTTAAG 1 cut(s) 607
AgsI TTSAA 7 cut(s) 283, 626, 647, 761, 830, 897, 915
AhlI ACTAGT 2 cut(s) 509, 1037
AjnI CCWGG 3 cut(s) 27, 178, 1061
AluBI AGCT 4 cut(s) 464, 474, 501, 889
AluI AGCT 4 cut(s) 464, 474, 501, 889
Alw21I GWGCWC 4 cut(s) 355, 476, 482, 886
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 5 cut(s) 26, 39, 105, 177, 190
AlwNI CAGNNNCTG 1 cut(s) 425
Ama87I CYCGRG 3 cut(s) 224, 342, 475
AoxI GGCC 3 cut(s) 207, 526, 715
ApeKI GCWGC 5 cut(s) 49, 381, 434, 501, 769
ApoI RAATTY 2 cut(s) 621, 647
AseI ATTAAT 1 cut(s) 1053
AspLEI GCGC 3 cut(s) 309, 333, 453
AspS9I GGNCC 1 cut(s) 339
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 408
AvaI CYCGRG 3 cut(s) 224, 342, 475
AvaII GGWCC 1 cut(s) 339
BamHI GGATCC 2 cut(s) 31, 182
BanII GRGCYC 1 cut(s) 476
Bbv12I GWGCWC 4 cut(s) 355, 476, 482, 886
BbvI GCAGC 5 cut(s) 61, 368, 446, 488, 781
BccI CCATC 3 cut(s) 140, 142, 928
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 3 cut(s) 29, 180, 1063
BciVI GTATCC 1 cut(s) 850
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 2 cut(s) 509, 1037
BfaI CTAG 5 cut(s) 141, 201, 510, 672, 1038
BfmI CTRYAG 2 cut(s) 382, 502
BfoI RGCGCY 2 cut(s) 334, 454
BfrI CTTAAG 1 cut(s) 607
BfuAI ACCTGC 1 cut(s) 332
BfuI GTATCC 1 cut(s) 850
BisI GCNGC 7 cut(s) 50, 125, 382, 435, 502, 604, 770
BlpI GCTNAGC 2 cut(s) 723, 885
BlsI GCNGC 7 cut(s) 51, 126, 383, 436, 503, 605, 771
BmcAI AGTACT 2 cut(s) 508, 1033
Bme1390I CCNGG 4 cut(s) 21, 29, 180, 1063
Bme18I GGWCC 1 cut(s) 339
BmeT110I CYCGRG 3 cut(s) 224, 342, 475
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 5 cut(s) 33, 184, 341, 537, 798
BmrFI CCNGG 4 cut(s) 21, 29, 180, 1063
BmsI GCATC 5 cut(s) 239, 431, 437, 757, 927
BpmI CTGGAG 2 cut(s) 1045, 1065
Bpu10I CCTNAGC 1 cut(s) 852
Bpu1102I GCTNAGC 2 cut(s) 723, 885
BpuMI CCSGG 1 cut(s) 21
BsaBI GATNNNNATC 4 cut(s) 102, 253, 444, 1011
BsaJI CCNNGG 2 cut(s) 343, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 374
Bse118I RCCGGY 2 cut(s) 327, 367
Bse1I ACTGG 6 cut(s) 50, 341, 718, 823, 1028, 1095
Bse8I GATNNNNATC 4 cut(s) 102, 253, 444, 1011
BseBI CCWGG 3 cut(s) 29, 180, 1063
BseDI CCNNGG 2 cut(s) 343, 454
BseGI GGATG 1 cut(s) 11
BseJI GATNNNNATC 4 cut(s) 102, 253, 444, 1011
BseLI CCNNNNNNNGG 2 cut(s) 45, 374
BseMII CTCAG 5 cut(s) 347, 714, 866, 899, 944
BseNI ACTGG 6 cut(s) 50, 341, 718, 823, 1028, 1095
BseRI GAGGAG 6 cut(s) 360, 363, 390, 528, 531, 891
BseXI GCAGC 5 cut(s) 61, 368, 446, 488, 781
Bsh1236I CGCG 1 cut(s) 307
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 3 cut(s) 209, 528, 717
BsiEI CGRYCG 1 cut(s) 372
BsiHKAI GWGCWC 4 cut(s) 355, 476, 482, 886
BsiHKCI CYCGRG 3 cut(s) 224, 342, 475
BsiSI CCGG 4 cut(s) 21, 328, 368, 600
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 45, 374
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 3 cut(s) 209, 528, 717
BsoBI CYCGRG 3 cut(s) 224, 342, 475
Bsp1286I GDGCHC 4 cut(s) 355, 476, 482, 886
Bsp143I GATC 9 cut(s) 31, 97, 182, 193, 407, 439, 734, 1006, 1069
Bsp1720I GCTNAGC 2 cut(s) 723, 885
BspACI CCGC 5 cut(s) 122, 125, 159, 305, 603
BspANI GGCC 3 cut(s) 209, 528, 717
BspCNI CTCAG 5 cut(s) 348, 715, 865, 898, 943
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 5 cut(s) 33, 184, 341, 537, 798
BspMAI CTGCAG 2 cut(s) 386, 506
BspMI ACCTGC 1 cut(s) 332
BspPI GGATC 5 cut(s) 26, 39, 105, 177, 190
BspTI CTTAAG 1 cut(s) 607
BsrFI RCCGGY 2 cut(s) 327, 367
BsrI ACTGG 6 cut(s) 50, 341, 718, 823, 1028, 1095
BssAI RCCGGY 2 cut(s) 327, 367
BssECI CCNNGG 2 cut(s) 343, 454
BssMI GATC 9 cut(s) 31, 97, 182, 193, 407, 439, 734, 1006, 1069
BssT1I CCWWGG 1 cut(s) 454
Bst2UI CCWGG 3 cut(s) 29, 180, 1063
Bst4CI ACNGT 1 cut(s) 484
Bst6I CTCTTC 1 cut(s) 868
BstAFI CTTAAG 1 cut(s) 607
BstAPI GCANNNNNTGC 1 cut(s) 324
BstC8I GCNNGC 3 cut(s) 166, 329, 365
BstDEI CTNAG 7 cut(s) 356, 523, 584, 723, 852, 885, 930
BstF5I GGATG 1 cut(s) 11
BstFNI CGCG 1 cut(s) 307
BstH2I RGCGCY 2 cut(s) 334, 454
BstHHI GCGC 3 cut(s) 309, 333, 453
BstKTI GATC 9 cut(s) 34, 100, 185, 196, 410, 442, 737, 1009, 1072
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 9 cut(s) 31, 97, 182, 193, 407, 439, 734, 1006, 1069
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 6 cut(s) 55, 165, 206, 315, 324, 434
BstNI CCWGG 3 cut(s) 29, 180, 1063
BstSCI CCNGG 4 cut(s) 19, 27, 178, 1061
BstSFI CTRYAG 2 cut(s) 382, 502
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 5 cut(s) 61, 368, 446, 488, 781
BstX2I RGATCY 2 cut(s) 31, 182
BstYI RGATCY 2 cut(s) 31, 182
BsuI GTATCC 1 cut(s) 850
BsuRI GGCC 3 cut(s) 209, 528, 717
BtsCI GGATG 1 cut(s) 11
BtsIMutI CAGTG 3 cut(s) 353, 480, 965
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 3 cut(s) 166, 329, 365
CaiI CAGNNNCTG 1 cut(s) 425
CfoI GCGC 3 cut(s) 309, 333, 453
Cfr10I RCCGGY 2 cut(s) 327, 367
Cfr13I GGNCC 1 cut(s) 339
CseI GACGC 1 cut(s) 307
Csp6I GTAC 2 cut(s) 507, 1032
CviAII CATG 2 cut(s) 187, 812
CviQI GTAC 2 cut(s) 507, 1032
DdeI CTNAG 7 cut(s) 356, 523, 584, 723, 852, 885, 930
DpnI GATC 9 cut(s) 33, 99, 184, 195, 409, 441, 736, 1008, 1071
DpnII GATC 9 cut(s) 31, 97, 182, 193, 407, 439, 734, 1006, 1069
Eam1104I CTCTTC 1 cut(s) 868
EarI CTCTTC 1 cut(s) 868
EciI GGCGGA 2 cut(s) 111, 174
Ecl136II GAGCTC 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 339
Eco53kI GAGCTC 1 cut(s) 474
Eco57I CTGAAG 1 cut(s) 728
Eco88I CYCGRG 3 cut(s) 224, 342, 475
EcoICRI GAGCTC 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 621
EcoRII CCWGG 3 cut(s) 27, 178, 1061
EcoT14I CCWWGG 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 476
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 2 cut(s) 190, 815
FaiI YATR 8 cut(s) 188, 594, 654, 813, 820, 870, 974, 1108
FaqI GGGAC 1 cut(s) 228
FatI CATG 2 cut(s) 186, 811
Fnu4HI GCNGC 7 cut(s) 50, 125, 382, 435, 502, 604, 770
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 7 cut(s) 50, 125, 382, 435, 502, 604, 770
FspBI CTAG 5 cut(s) 141, 201, 510, 672, 1038
GlaI GCGC 3 cut(s) 308, 332, 452
GluI GCNGC 7 cut(s) 50, 125, 382, 435, 502, 604, 770
GsuI CTGGAG 2 cut(s) 1045, 1065
HaeII RGCGCY 2 cut(s) 334, 454
HaeIII GGCC 3 cut(s) 209, 528, 717
HapII CCGG 4 cut(s) 21, 328, 368, 600
HgaI GACGC 1 cut(s) 307
HhaI GCGC 3 cut(s) 309, 333, 453
Hin1II CATG 2 cut(s) 190, 815
Hin6I GCGC 3 cut(s) 307, 331, 451
HinP1I GCGC 3 cut(s) 307, 331, 451
HincII GTYRAC 1 cut(s) 711
HindII GTYRAC 1 cut(s) 711
HinfI GANTC 3 cut(s) 103, 254, 911
HpaII CCGG 4 cut(s) 21, 328, 368, 600
HphI GGTGA 1 cut(s) 408
Hpy166II GTNNAC 1 cut(s) 711
Hpy188I TCNGA 5 cut(s) 102, 193, 374, 660, 933
Hpy188III TCNNGA 3 cut(s) 141, 854, 978
Hpy8I GTNNAC 1 cut(s) 711
HpyAV CCTTC 3 cut(s) 381, 645, 824
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4V TGCA 4 cut(s) 318, 384, 428, 504
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 165, 206, 315, 324, 434
HpyF3I CTNAG 7 cut(s) 356, 523, 584, 723, 852, 885, 930
Hsp92II CATG 2 cut(s) 190, 815
HspAI GCGC 3 cut(s) 307, 331, 451
KroI GCCGGC 1 cut(s) 327
KroNI GCCGGC 1 cut(s) 329
Kzo9I GATC 9 cut(s) 31, 97, 182, 193, 407, 439, 734, 1006, 1069
LmnI GCTCC 5 cut(s) 161, 350, 461, 541, 796
Lsp1109I GCAGC 5 cut(s) 61, 368, 446, 488, 781
LweI GCATC 5 cut(s) 239, 431, 437, 757, 927
MaeI CTAG 5 cut(s) 141, 201, 510, 672, 1038
MaeIII GTNAC 3 cut(s) 152, 414, 587
MalI GATC 9 cut(s) 33, 99, 184, 195, 409, 441, 736, 1008, 1071
MboI GATC 9 cut(s) 31, 97, 182, 193, 407, 439, 734, 1006, 1069
MboII GAAGA 6 cut(s) 107, 110, 129, 885, 965, 1080
MflI RGATCY 2 cut(s) 31, 182
MhlI GDGCHC 4 cut(s) 355, 476, 482, 886
MluCI AATT 7 cut(s) 286, 554, 595, 621, 647, 773, 790
MmeI TCCRAC 2 cut(s) 352, 519
MroNI GCCGGC 1 cut(s) 327
MseI TTAA 2 cut(s) 608, 1053
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 501
MspCI CTTAAG 1 cut(s) 607
MspI CCGG 4 cut(s) 21, 328, 368, 600
MspR9I CCNGG 4 cut(s) 21, 29, 180, 1063
MvaI CCWGG 3 cut(s) 29, 180, 1063
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 6 cut(s) 55, 165, 206, 315, 324, 434
NaeI GCCGGC 1 cut(s) 329
NciI CCSGG 1 cut(s) 21
NdeII GATC 9 cut(s) 31, 97, 182, 193, 407, 439, 734, 1006, 1069
NgoMIV GCCGGC 1 cut(s) 327
NlaIII CATG 2 cut(s) 190, 815
NlaIV GGNNCC 5 cut(s) 33, 184, 341, 537, 798
NmuCI GTSAC 2 cut(s) 414, 587
PaeR7I CTCGAG 1 cut(s) 475
PdiI GCCGGC 1 cut(s) 329
PfeI GAWTC 3 cut(s) 103, 254, 911
PflMI CCANNNNNTGG 1 cut(s) 45
PkrI GCNGC 7 cut(s) 51, 126, 383, 436, 503, 605, 771
PshBI ATTAAT 1 cut(s) 1053
PsiI TTATAA 1 cut(s) 1108
Psp124BI GAGCTC 1 cut(s) 476
Psp6I CCWGG 3 cut(s) 27, 178, 1061
PspGI CCWGG 3 cut(s) 27, 178, 1061
PspN4I GGNNCC 5 cut(s) 33, 184, 341, 537, 798
PspPI GGNCC 1 cut(s) 339
PspXI VCTCGAGB 1 cut(s) 475
PstI CTGCAG 2 cut(s) 386, 506
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 2 cut(s) 31, 182
PvuII CAGCTG 1 cut(s) 501
RsaI GTAC 2 cut(s) 508, 1033
RsaNI GTAC 2 cut(s) 507, 1032
RseI CAYNNNNRTG 1 cut(s) 585
SacI GAGCTC 1 cut(s) 476
SaqAI TTAA 2 cut(s) 608, 1053
SatI GCNGC 7 cut(s) 50, 125, 382, 435, 502, 604, 770
Sau3AI GATC 9 cut(s) 31, 97, 182, 193, 407, 439, 734, 1006, 1069
Sau96I GGNCC 1 cut(s) 339
ScaI AGTACT 2 cut(s) 508, 1033
ScrFI CCNGG 4 cut(s) 21, 29, 180, 1063
SduI GDGCHC 4 cut(s) 355, 476, 482, 886
SfaNI GCATC 5 cut(s) 239, 431, 437, 757, 927
SfcI CTRYAG 2 cut(s) 382, 502
Sfr274I CTCGAG 1 cut(s) 475
SinI GGWCC 1 cut(s) 339
SlaI CTCGAG 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 2 cut(s) 475, 607
SmoI CTYRAG 2 cut(s) 475, 607
SpeI ACTAGT 2 cut(s) 509, 1037
Sse9I AATT 7 cut(s) 286, 554, 595, 621, 647, 773, 790
SsiI CCGC 5 cut(s) 122, 125, 159, 305, 603
SspI AATATT 1 cut(s) 664
SspMI CTAG 5 cut(s) 141, 201, 510, 672, 1038
SstI GAGCTC 1 cut(s) 476
StyD4I CCNGG 4 cut(s) 19, 27, 178, 1061
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 1 cut(s) 484
TaqI TCGA 2 cut(s) 470, 476
TasI AATT 7 cut(s) 286, 554, 595, 621, 647, 773, 790
TatI WGTACW 2 cut(s) 506, 1031
TauI GCSGC 2 cut(s) 127, 606
TfiI GAWTC 3 cut(s) 103, 254, 911
Tru1I TTAA 2 cut(s) 608, 1053
Tru9I TTAA 2 cut(s) 608, 1053
TscAI CASTG 3 cut(s) 360, 487, 972
TseFI GTSAC 2 cut(s) 414, 587
TseI GCWGC 5 cut(s) 49, 381, 434, 501, 769
Tsp45I GTSAC 2 cut(s) 414, 587
TspDTI ATGAA 1 cut(s) 641
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 3 cut(s) 360, 487, 972
Van91I CCANNNNNTGG 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 339
VspI ATTAAT 1 cut(s) 1053
XapI RAATTY 2 cut(s) 621, 647
XbaI TCTAGA 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 2 cut(s) 42, 461
XhoI CTCGAG 1 cut(s) 475
XspI CTAG 5 cut(s) 141, 201, 510, 672, 1038
ZrmI AGTACT 2 cut(s) 508, 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.