Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007025

Physical Location & Seq

Genomic Coordinates Forward (+)

25658297 .. 25660239

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G233600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTTTTCTCATCTGTTCCCGTCTATATGGATCCACCCAACTGGCAACAACAGCAAACAAATCATCAACAACAAGGAGGTTGTAATGATCAGAATAATCATCAGCTTCCTCCGCCCCCACCTCAAGAAGCTGGATGTAATTCAGAAGGTGGCGGCAGCGGCTCAAGCTCGATCAGGCCTGGATCCATGTCTGATCGAGCCAGGCTAGCCAAGATGCCGCAGCCAGAGACTGCACTGAAATGCCCTCGATGTGAATCCATAAACACCAAGTTTTGCTACTTCAACAATTACAGCCTTTCACAGCCTCGTCACTTCTGCAAGACCTGCAGGCGCTACTGGACCAGAGGAGGAGCGTTGAGAAGTGTGCCGGTCGGAGGAGGCTGTCGAAGAAACAAAAGAAGCAAAGGCAGCGGCGGCAGCAGCAGGTCAAAATCTCCTGCCGCAGCCGGTAATTCCAGCTCAAGCACAGTCAACTCTTCCAACAGCTGCAGCACCAGTGACAATATCATAGGCCATTTGGCTCATCCACCACCACATCAATTACCCTTTTTACCCTCTATGCATCATCTTGGTGATTATGGTTCCGGGGACATGATAGGGTTAAATAATTTTGGGGGCATGAACCAACCTGCTGATGTTGAATTTCAACAGCATCAGTTTGGCTCGGACCGGTTGACGGTCCGGCCAAATTTAGGCATCAACATGATCAACACTGAGCATTGGAGATCATCACTGCTTCAGCATCAAGTTCAGCAATTTCCTAATTTCTTGGCTAATTTGGAACCACCAACTAGTTCTCATGGGATGTACCAATTTGAAGGTGGAAATGTTCATCAAAATGTTGGCCTCCTTCCAATGTCTAAGCCATTGGATTCTGTGGGTCCTGGGGTTGCTGCTACTCAGATGGCTAATGTGAAGATGGAAGACAATAATCATCAAGCATTGAATTTGTCAAGAAATTTTTTGGGCAGCCTTGGAAATGATCATCACCAATACTGGGGTAATAATGGTGCTGGTGGCAATGCTTGGACTGATCTTTCTGGTTTCACTACTTCTTCTTCCACCAGCCATCTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

360

Amino Acids

38.91

Weight (kDa)

8.74

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55370 AT3G55370 AT3G55370
fragaria_vesca	FvH4_7g22180 FvH4_7g22180 FvH4_7g22180
malus_domestica	MD00G1177000.v1.1 MD00G1177100.v1.1 MD01G1126700.v1.1 MD07G1197500.v1.1
prunus_persica	Prupe.2G233600_v2.0.a1 Prupe.2G233600_v2.0.a1
pyrus_communis	pycom01g15240 pycom07g18480
rosa_chinensis	RchiOBHm_Chr1g0366541
rosa_laevigata	RLG00000027338
rosa_multiflora	Rmu_ssc0000250.1_g000026
rosa_roxburghii	Rroxscaffold_4G00289840 Rroxscaffold_4G00290100
rosa_rugosa	Rorug01G0330700
rosa_samantha	Rh1AG338600 Rh1BG300300 Rh1CG315400 Rh1DG332100
rosa_wichuraiana	Rw1G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	332, 414, 637
AciI	CCGC	7 cut(s)	113, 153, 159, 218, 411, 414, 441
AclWI	GGATC	4 cut(s)	26, 39, 177, 190
AcoI	YGGCCR	1 cut(s)	683
AcsI	RAATTY	4 cut(s)	641, 688, 946, 958
AcuI	CTGAAG	1 cut(s)	722
AfaI	GTAC	1 cut(s)	809
AfiI	CCNNNNNNNGG	4 cut(s)	374, 676, 692, 997
AgeI	ACCGGT	1 cut(s)	669
AgsI	TTSAA	5 cut(s)	283, 641, 647, 818, 946
AhlI	ACTAGT	1 cut(s)	791
AjnI	CCWGG	3 cut(s)	178, 200, 883
AluBI	AGCT	5 cut(s)	106, 131, 168, 459, 486
AluI	AGCT	5 cut(s)	106, 131, 168, 459, 486
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	4 cut(s)	26, 39, 177, 190
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	4 cut(s)	176, 511, 683, 844
ApoI	RAATTY	4 cut(s)	641, 688, 946, 958
AsiGI	ACCGGT	1 cut(s)	669
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	4 cut(s)	339, 667, 679, 881
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	2 cut(s)	584, 980
AsuNHI	GCTAGC	1 cut(s)	205
AvaII	GGWCC	4 cut(s)	339, 667, 679, 881
BamHI	GGATCC	2 cut(s)	31, 182
BbsI	GAAGAC	1 cut(s)	930
BccI	CCATC	3 cut(s)	898, 913, 1077
BciT130I	CCWGG	3 cut(s)	180, 202, 885
BclI	TGATCA	3 cut(s)	88, 705, 982
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	791
BfaI	CTAG	2 cut(s)	206, 792
BfmI	CTRYAG	2 cut(s)	325, 487
BfoI	RGCGCY	1 cut(s)	334
BfuAI	ACCTGC	3 cut(s)	332, 414, 637
Bme1390I	CCNGG	4 cut(s)	180, 202, 586, 885
Bme18I	GGWCC	4 cut(s)	339, 667, 679, 881
BmgT120I	GGNCC	4 cut(s)	339, 667, 679, 881
BmiI	GGNNCC	5 cut(s)	33, 184, 583, 783, 882
BmrFI	CCNGG	4 cut(s)	180, 202, 586, 885
BmrI	ACTGGG	1 cut(s)	1006
BmsI	GCATC	5 cut(s)	204, 571, 661, 705, 751
BmtI	GCTAGC	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	1006
BpiI	GAAGAC	1 cut(s)	930
BpuEI	CTTGAG	3 cut(s)	108, 148, 445
BpuMI	CCSGG	1 cut(s)	586
BsaBI	GATNNNNATC	1 cut(s)	253
BsaJI	CCNNGG	3 cut(s)	585, 884, 973
BsaWI	WCCGGW	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	4 cut(s)	374, 676, 692, 997
Bse118I	RCCGGY	3 cut(s)	367, 446, 669
Bse1I	ACTGG	4 cut(s)	47, 341, 495, 1001
Bse3DI	GCAATG	1 cut(s)	1027
Bse8I	GATNNNNATC	1 cut(s)	253
BseBI	CCWGG	3 cut(s)	180, 202, 885
BseDI	CCNNGG	3 cut(s)	585, 884, 973
BseGI	GGATG	3 cut(s)	140, 523, 810
BseJI	GATNNNNATC	1 cut(s)	253
BseLI	CCNNNNNNNGG	4 cut(s)	374, 676, 692, 997
BseMI	GCAATG	1 cut(s)	1027
BseMII	CTCAG	2 cut(s)	705, 914
BseNI	ACTGG	4 cut(s)	47, 341, 495, 1001
BseRI	GAGGAG	3 cut(s)	360, 363, 390
BsgI	GTGCAG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	4 cut(s)	178, 513, 685, 846
BshTI	ACCGGT	1 cut(s)	669
BsiEI	CGRYCG	1 cut(s)	372
BsiSI	CCGG	5 cut(s)	368, 447, 585, 670, 682
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	4 cut(s)	374, 676, 692, 997
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	4 cut(s)	178, 513, 685, 846
Bsp143I	GATC	9 cut(s)	31, 88, 171, 182, 193, 705, 725, 982, 1033
BspACI	CCGC	7 cut(s)	113, 153, 159, 218, 411, 414, 441
BspANI	GGCC	4 cut(s)	178, 513, 685, 846
BspCNI	CTCAG	2 cut(s)	706, 913
BspLI	GGNNCC	5 cut(s)	33, 184, 583, 783, 882
BspMAI	CTGCAG	2 cut(s)	329, 491
BspMI	ACCTGC	3 cut(s)	332, 414, 637
BspOI	GCTAGC	1 cut(s)	209
BspPI	GGATC	4 cut(s)	26, 39, 177, 190
BsrDI	GCAATG	1 cut(s)	1027
BsrFI	RCCGGY	3 cut(s)	367, 446, 669
BsrI	ACTGG	4 cut(s)	47, 341, 495, 1001
BssAI	RCCGGY	3 cut(s)	367, 446, 669
BssECI	CCNNGG	3 cut(s)	585, 884, 973
BssMI	GATC	9 cut(s)	31, 88, 171, 182, 193, 705, 725, 982, 1033
BssT1I	CCWWGG	1 cut(s)	973
Bst2UI	CCWGG	3 cut(s)	180, 202, 885
Bst4CI	ACNGT	2 cut(s)	469, 679
Bst6I	CTCTTC	1 cut(s)	481
BstAPI	GCANNNNNTGC	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	207, 329
BstDEI	CTNAG	3 cut(s)	714, 861, 900
BstF5I	GGATG	3 cut(s)	140, 523, 810
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	9 cut(s)	34, 91, 174, 185, 196, 708, 728, 985, 1036
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	9 cut(s)	31, 88, 171, 182, 193, 705, 725, 982, 1033
BstMCI	CGRYCG	1 cut(s)	372
BstNI	CCWGG	3 cut(s)	180, 202, 885
BstSCI	CCNGG	4 cut(s)	178, 200, 584, 883
BstSFI	CTRYAG	2 cut(s)	325, 487
BstV2I	GAAGAC	1 cut(s)	930
BstX2I	RGATCY	2 cut(s)	31, 182
BstXI	CCANNNNNNTGG	1 cut(s)	42
BstYI	RGATCY	2 cut(s)	31, 182
BsuRI	GGCC	4 cut(s)	178, 513, 685, 846
BtsCI	GGATG	3 cut(s)	140, 523, 810
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	4 cut(s)	233, 502, 711, 731
BveI	ACCTGC	3 cut(s)	332, 414, 637
Cac8I	GCNNGC	2 cut(s)	207, 329
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	1 cut(s)	333
Cfr10I	RCCGGY	3 cut(s)	367, 446, 669
Cfr13I	GGNCC	4 cut(s)	339, 667, 679, 881
CpoI	CGGWCCG	2 cut(s)	667, 679
Csp6I	GTAC	1 cut(s)	808
CspAI	ACCGGT	1 cut(s)	669
CspI	CGGWCCG	2 cut(s)	667, 679
CviAII	CATG	5 cut(s)	187, 592, 619, 703, 800
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	3 cut(s)	714, 861, 900
DpnI	GATC	9 cut(s)	33, 90, 173, 184, 195, 707, 727, 984, 1035
DpnII	GATC	9 cut(s)	31, 88, 171, 182, 193, 705, 725, 982, 1033
EaeI	YGGCCR	1 cut(s)	683
Eam1104I	CTCTTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	481
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	973
Eco147I	AGGCCT	1 cut(s)	178
Eco47I	GGWCC	4 cut(s)	339, 667, 679, 881
Eco57I	CTGAAG	1 cut(s)	722
EcoO109I	RGGNCCY	1 cut(s)	881
EcoRII	CCWGG	3 cut(s)	178, 200, 883
EcoT14I	CCWWGG	1 cut(s)	973
EcoT22I	ATGCAT	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	973
FaeI	CATG	5 cut(s)	190, 595, 622, 706, 803
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	5 cut(s)	186, 591, 618, 702, 799
FbaI	TGATCA	3 cut(s)	88, 705, 982
FokI	GGATG	3 cut(s)	147, 510, 817
FspBI	CTAG	2 cut(s)	206, 792
GlaI	GCGC	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	334
HaeIII	GGCC	4 cut(s)	178, 513, 685, 846
HapII	CCGG	5 cut(s)	368, 447, 585, 670, 682
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	5 cut(s)	190, 595, 622, 706, 803
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HincII	GTYRAC	2 cut(s)	472, 675
HindII	GTYRAC	2 cut(s)	472, 675
HinfI	GANTC	2 cut(s)	254, 872
HpaII	CCGG	5 cut(s)	368, 447, 585, 670, 682
HphI	GGTGA	2 cut(s)	584, 980
Hpy166II	GTNNAC	2 cut(s)	472, 675
Hpy188I	TCNGA	6 cut(s)	93, 145, 193, 374, 667, 903
Hpy188III	TCNNGA	2 cut(s)	125, 954
Hpy8I	GTNNAC	2 cut(s)	472, 675
HpyAV	CCTTC	3 cut(s)	140, 812, 860
HpyCH4III	ACNGT	2 cut(s)	469, 679
HpyCH4V	TGCA	5 cut(s)	233, 318, 327, 489, 562
HpyF3I	CTNAG	3 cut(s)	714, 861, 900
Hsp92II	CATG	5 cut(s)	190, 595, 622, 706, 803
HspAI	GCGC	1 cut(s)	331
Ksp22I	TGATCA	3 cut(s)	88, 705, 982
Kzo9I	GATC	9 cut(s)	31, 88, 171, 182, 193, 705, 725, 982, 1033
LmnI	GCTCC	1 cut(s)	350
LweI	GCATC	5 cut(s)	204, 571, 661, 705, 751
MaeI	CTAG	2 cut(s)	206, 792
MaeIII	GTNAC	2 cut(s)	308, 497
MalI	GATC	9 cut(s)	33, 90, 173, 184, 195, 707, 727, 984, 1035
MboI	GATC	9 cut(s)	31, 88, 171, 182, 193, 705, 725, 982, 1033
MboII	GAAGA	6 cut(s)	399, 468, 928, 935, 1047, 1050
MflI	RGATCY	2 cut(s)	31, 182
MmeI	TCCRAC	2 cut(s)	352, 504
Mph1103I	ATGCAT	1 cut(s)	564
MseI	TTAA	1 cut(s)	602
MslI	CAYNNNNRTG	4 cut(s)	238, 570, 701, 837
MspA1I	CMGCKG	3 cut(s)	159, 411, 486
MspI	CCGG	5 cut(s)	368, 447, 585, 670, 682
MspR9I	CCNGG	4 cut(s)	180, 202, 586, 885
MvaI	CCWGG	3 cut(s)	180, 202, 885
NciI	CCSGG	1 cut(s)	586
NdeII	GATC	9 cut(s)	31, 88, 171, 182, 193, 705, 725, 982, 1033
NheI	GCTAGC	1 cut(s)	205
NlaIII	CATG	5 cut(s)	190, 595, 622, 706, 803
NlaIV	GGNNCC	5 cut(s)	33, 184, 583, 783, 882
NmuCI	GTSAC	2 cut(s)	308, 497
NsiI	ATGCAT	1 cut(s)	564
PceI	AGGCCT	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	254, 872
PinAI	ACCGGT	1 cut(s)	669
PpuMI	RGGWCCY	1 cut(s)	881
Psp5II	RGGWCCY	1 cut(s)	881
Psp6I	CCWGG	3 cut(s)	178, 200, 883
PspGI	CCWGG	3 cut(s)	178, 200, 883
PspN4I	GGNNCC	5 cut(s)	33, 184, 583, 783, 882
PspPI	GGNCC	4 cut(s)	339, 667, 679, 881
PspPPI	RGGWCCY	1 cut(s)	881
PstI	CTGCAG	2 cut(s)	329, 491
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	31, 182
PvuII	CAGCTG	1 cut(s)	486
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
RseI	CAYNNNNRTG	4 cut(s)	238, 570, 701, 837
Rsr2I	CGGWCCG	2 cut(s)	667, 679
RsrII	CGGWCCG	2 cut(s)	667, 679
SaqAI	TTAA	1 cut(s)	602
Sau3AI	GATC	9 cut(s)	31, 88, 171, 182, 193, 705, 725, 982, 1033
Sau96I	GGNCC	4 cut(s)	339, 667, 679, 881
SbfI	CCTGCAGG	1 cut(s)	329
ScrFI	CCNGG	4 cut(s)	180, 202, 586, 885
SdaI	CCTGCAGG	1 cut(s)	329
SfaNI	GCATC	5 cut(s)	204, 571, 661, 705, 751
SfcI	CTRYAG	2 cut(s)	325, 487
SinI	GGWCC	4 cut(s)	339, 667, 679, 881
SmiMI	CAYNNNNRTG	4 cut(s)	238, 570, 701, 837
SmlI	CTYRAG	3 cut(s)	123, 163, 460
SmoI	CTYRAG	3 cut(s)	123, 163, 460
SpeI	ACTAGT	1 cut(s)	791
Sse8387I	CCTGCAGG	1 cut(s)	329
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	7 cut(s)	113, 153, 159, 218, 411, 414, 441
SspMI	CTAG	2 cut(s)	206, 792
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	4 cut(s)	178, 200, 584, 883
StyI	CCWWGG	1 cut(s)	973
TaaI	ACNGT	2 cut(s)	469, 679
TaqI	TCGA	4 cut(s)	170, 196, 247, 385
TauI	GCSGC	6 cut(s)	156, 162, 220, 414, 417, 443
TfiI	GAWTC	2 cut(s)	254, 872
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	4 cut(s)	240, 502, 718, 738
TseFI	GTSAC	2 cut(s)	308, 497
Tsp45I	GTSAC	2 cut(s)	308, 497
TspDTI	ATGAA	2 cut(s)	635, 821
TspRI	CASTG	4 cut(s)	240, 502, 718, 738
VpaK11BI	GGWCC	4 cut(s)	339, 667, 679, 881
XapI	RAATTY	4 cut(s)	641, 688, 946, 958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XspI	CTAG	2 cut(s)	206, 792
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.