Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007025

Physical Location & Seq

Genomic Coordinates Forward (+)

41132453 .. 41132953

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1177000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGTTTTCTCATCCGTTCCCGTCTATCTGGATCCACCCAACTGGCAACAACAGCAAACAAATCATCAACAAGGAGGTGGATGTGATCAGAATAATCTTCAGCTTCCGCAGCAGCCGTCTTCAGAACCTAGGTGCACTTCAAGAGATGGCAGCGGCAGTTTGGGCTCGATCAAACCTGGGTCCATGTCTGATCGAGCCCGGCTGGCCAATATACCACAGCCAGAGACGGCAACCGAAATGCCCTCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

84

Amino Acids

9.0

Weight (kDa)

5.0

Isoelectric Point (pI)

81.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55370 AT3G55370 AT3G55370
fragaria_vesca	FvH4_7g22180 FvH4_7g22180 FvH4_7g22180
malus_domestica	MD00G1177000.v1.1 MD00G1177100.v1.1 MD01G1126700.v1.1 MD07G1197500.v1.1
prunus_persica	Prupe.2G233600_v2.0.a1 Prupe.2G233600_v2.0.a1
pyrus_communis	pycom01g15240 pycom07g18480
rosa_chinensis	RchiOBHm_Chr1g0366541
rosa_laevigata	RLG00000027338
rosa_multiflora	Rmu_ssc0000250.1_g000026
rosa_roxburghii	Rroxscaffold_4G00289840 Rroxscaffold_4G00290100
rosa_rugosa	Rorug01G0330700
rosa_samantha	Rh1AG338600 Rh1BG300300 Rh1CG315400 Rh1DG332100
rosa_wichuraiana	Rw1G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	107, 153
AclWI	GGATC	2 cut(s)	26, 39
AcoI	YGGCCR	1 cut(s)	204
AcuI	CTGAAG	2 cut(s)	83, 105
AgsI	TTSAA	1 cut(s)	141
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	218
Alw44I	GTGCAC	1 cut(s)	133
AlwI	GGATC	2 cut(s)	26, 39
AoxI	GGCC	1 cut(s)	204
ApaLI	GTGCAC	1 cut(s)	133
ApeKI	GCWGC	3 cut(s)	109, 112, 150
AspA2I	CCTAGG	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	180
AvrII	CCTAGG	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	31
BanII	GRGCYC	2 cut(s)	167, 199
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	3 cut(s)	121, 124, 162
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	2 cut(s)	100, 243
BciT130I	CCWGG	1 cut(s)	177
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	129
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	4 cut(s)	110, 113, 151, 154
BlnI	CCTAGG	1 cut(s)	128
BlsI	GCNGC	4 cut(s)	111, 114, 152, 155
Bme1390I	CCNGG	2 cut(s)	177, 199
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	33, 181
BmrFI	CCNGG	2 cut(s)	177, 199
BpiI	GAAGAC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	128, 176
Bse1I	ACTGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	128, 176
BseGI	GGATG	2 cut(s)	11, 86
BseNI	ACTGG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	137
BseXI	GCAGC	3 cut(s)	121, 124, 162
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	218
BsmBI	CGTCTC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	206
Bsp1286I	GDGCHC	3 cut(s)	137, 167, 199
Bsp143I	GATC	4 cut(s)	31, 85, 168, 190
BspACI	CCGC	2 cut(s)	107, 153
BspANI	GGCC	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	33, 181
BspPI	GGATC	2 cut(s)	26, 39
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	128, 176
BssMI	GATC	4 cut(s)	31, 85, 168, 190
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	11, 86
BstKTI	GATC	4 cut(s)	34, 88, 171, 193
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	4 cut(s)	31, 85, 168, 190
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 109, 162, 203
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	2 cut(s)	175, 197
BstSLI	GKGCMC	1 cut(s)	137
BstV1I	GCAGC	3 cut(s)	121, 124, 162
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	11, 86
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	180
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	7 cut(s)	103, 115, 165, 197, 202, 206, 220
CviKI_1	RGCY	7 cut(s)	103, 115, 165, 197, 202, 206, 220
DpnI	GATC	4 cut(s)	33, 87, 170, 192
DpnII	GATC	4 cut(s)	31, 85, 168, 190
EaeI	YGGCCR	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	128
Eco24I	GRGCYC	2 cut(s)	167, 199
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	2 cut(s)	83, 105
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	128
EcoT38I	GRGCYC	2 cut(s)	167, 199
ErhI	CCWWGG	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	218
FaeI	CATG	1 cut(s)	187
FaiI	YATR	2 cut(s)	185, 212
FatI	CATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	110, 113, 151, 154
FokI	GGATG	1 cut(s)	93
FriOI	GRGCYC	2 cut(s)	167, 199
Fsp4HI	GCNGC	4 cut(s)	110, 113, 151, 154
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	110, 113, 151, 154
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	199
Hin1II	CATG	1 cut(s)	187
HpaII	CCGG	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	3 cut(s)	90, 124, 190
Hpy188III	TCNNGA	2 cut(s)	29, 141
Hpy8I	GTNNAC	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 109, 162, 203
Hsp92II	CATG	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	31, 85, 168, 190
LpnPI	CCDG	7 cut(s)	14, 28, 162, 188, 189, 212, 234
Lsp1109I	GCAGC	3 cut(s)	121, 124, 162
MaeI	CTAG	1 cut(s)	129
MalI	GATC	4 cut(s)	33, 87, 170, 192
MboI	GATC	4 cut(s)	31, 85, 168, 190
MboII	GAAGA	2 cut(s)	89, 111
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	3 cut(s)	137, 167, 199
MlsI	TGGCCA	1 cut(s)	206
MluNI	TGGCCA	1 cut(s)	206
MnlI	CCTC	1 cut(s)	68
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	2 cut(s)	177, 199
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	52, 109, 162, 203
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	31, 85, 168, 190
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	2 cut(s)	33, 181
PkrI	GCNGC	4 cut(s)	111, 114, 152, 155
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	33, 181
PspPI	GGNCC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	31
SatI	GCNGC	4 cut(s)	110, 113, 151, 154
Sau3AI	GATC	4 cut(s)	31, 85, 168, 190
Sau96I	GGNCC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	177, 199
SduI	GDGCHC	3 cut(s)	137, 167, 199
SetI	ASST	5 cut(s)	79, 105, 130, 134, 178
SinI	GGWCC	1 cut(s)	180
SsiI	CCGC	2 cut(s)	107, 153
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	175, 197
StyI	CCWWGG	1 cut(s)	128
TaqI	TCGA	3 cut(s)	167, 193, 245
TauI	GCSGC	1 cut(s)	156
TseI	GCWGC	3 cut(s)	109, 112, 150
TspGWI	ACGGA	1 cut(s)	4
VneI	GTGCAC	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	180
XmaJI	CCTAGG	1 cut(s)	128
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.