Rorug01G0330700

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004142
Physical Location & Seq
Reverse (-)
44931213 .. 44934233
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0330700.1

Sequence Viewer

Length: 1128 bp
ATGGACGCTTTCGTGTTTGATGAATCGGAGAACAGCGGAGCTGGAGCTGGAGGGACTAAAACTAAAAAGGAGAAGAAGGCAAAGGGATGTTTAGTTGGAAGTGCAAGGAAGACGCTTGGTGATATAAGTAACATTCAGCAGCGGCCAAATAAGCAAGCTATCCAGCATGTGAACCAGCAATTCGATTCACTTACTACGAAGAAGTATGTTGAGAATCTAACCAAGGAAAATGTGGCACTGATGAAACTTCTTTCAGACAGAAATAAAGTCATTGAATTGAGCAGAACAGAGTTAGAGAACTTGAGATCCCATCTTGAGAAAGTACAGCAACAGAATTCTCAACTTGCCCATGCAAACAGCCAGATGTTGGCGGAAGTCACTTCAAGTCGAGATAGGCTAAGGATACTTCAACATGCACTTGGATGCCAAAATGCCTTGCTCAAAGTGAGGAAAGTGGAGGAAAAGGAGAACGCCAAACGAGTAAGAAATCAAAATACGACAAATGAGAAGGTACATTCAGCTAAGTGTGTTGAGCCAGGGGAATCCTCACAAGCTGTCAAGGAACATTTTAATACGAACAGGAAACGCCAACCACAAAATCTAGCATTGGGCCCTCCTATTGTTGAAGTAGTCCAAAACAACGAGAAGGCTGACAACAAAAGACGCTTGAGAAGACAATCTGCAATCTTTGAAACCGAAGACCAGGAAACAACTGAAGACTCGTTTGAGATTAAAGATGACAATAAAAGACGGTTGAGAAGGCAATTGGCAAGTGCTAAAACTGAAGAACTACAAGCAACTGAAGACTTGTCTGAGAGTAAAAATGAGAACAAAAGTTTGAGAAGGCAATCTGCAAGGTTTAAAACTGAAGAGCCAGAAGTAACTAAAGAAACAAAAGTTACTGAGGACTTATCTGAGATCAATGATGATAATTTTCCTGTTTCTCTTTTGCATAATGATGGGGTTCATGAAAGTGATTCAACATGTCCATTAGTAAAAAACGAGGATGGGGGAAGATCTGAAGAACAAGAATTTCAAAGATCATCTATAAGGCCACTGCGCCGAGCAGCTGAGAAGGTTAAGTCATACAAGGAAATTCCAATTAATGTGAAGATGCGCCAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

375

Amino Acids

42.72

Weight (kDa)

9.04

Isoelectric Point (pI)

67.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Shugoshin_C PF07557 351 - 373 1.7e-08 Shugoshin C terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 367
AciI CCGC 3 cut(s) 36, 142, 371
AclWI GGATC 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 3 cut(s) 334, 1031, 1095
AcuI CTGAAG 5 cut(s) 735, 804, 822, 888, 1041
AfaI GTAC 2 cut(s) 324, 513
AfiI CCNNNNNNNGG 1 cut(s) 367
AflIII ACRYGT 1 cut(s) 983
AgsI TTSAA 7 cut(s) 275, 384, 410, 626, 692, 981, 1037
AjnI CCWGG 2 cut(s) 535, 702
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 6 cut(s) 41, 47, 158, 521, 554, 1070
AluI AGCT 6 cut(s) 41, 47, 158, 521, 554, 1070
AlwI GGATC 1 cut(s) 300
AoxI GGCC 3 cut(s) 143, 610, 1052
ApaI GGGCCC 1 cut(s) 614
ApeKI GCWGC 2 cut(s) 139, 1067
ApoI RAATTY 3 cut(s) 334, 1031, 1095
AseI ATTAAT 1 cut(s) 1104
AspLEI GCGC 2 cut(s) 1062, 1119
AspS9I GGNCC 2 cut(s) 610, 611
AsuHPI GGTGA 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 614
BbsI GAAGAC 5 cut(s) 116, 679, 705, 723, 810
BbvI GCAGC 2 cut(s) 151, 1079
BccI CCATC 3 cut(s) 318, 953, 1001
BciT130I CCWGG 2 cut(s) 537, 704
BciVI GTATCC 1 cut(s) 396
BfaI CTAG 1 cut(s) 602
BfuI GTATCC 1 cut(s) 396
BglII AGATCT 1 cut(s) 1016
BisI GCNGC 3 cut(s) 140, 143, 1068
BlsI GCNGC 3 cut(s) 141, 144, 1069
Bme1390I CCNGG 2 cut(s) 537, 704
BmgT120I GGNCC 2 cut(s) 610, 611
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 2 cut(s) 537, 704
BmsI GCATC 2 cut(s) 413, 1104
BpiI GAAGAC 5 cut(s) 116, 679, 705, 723, 810
BpmI CTGGAG 2 cut(s) 63, 69
Bpu10I CCTNAGC 1 cut(s) 398
BpuEI CTTGAG 3 cut(s) 322, 335, 688
BsaJI CCNNGG 3 cut(s) 222, 536, 1120
Bsc4I CCNNNNNNNGG 1 cut(s) 367
BseBI CCWGG 2 cut(s) 537, 704
BseDI CCNNGG 3 cut(s) 222, 536, 1120
BseGI GGATG 3 cut(s) 92, 428, 1012
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 4 cut(s) 804, 894, 906, 1062
BseSI GKGCMC 1 cut(s) 614
BseXI GCAGC 2 cut(s) 151, 1079
BshFI GGCC 3 cut(s) 145, 612, 1054
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 3 cut(s) 145, 612, 1054
Bsp120I GGGCCC 1 cut(s) 610
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 4 cut(s) 305, 918, 1016, 1040
BspACI CCGC 3 cut(s) 36, 142, 371
BspANI GGCC 3 cut(s) 145, 612, 1054
BspCNI CTCAG 4 cut(s) 805, 895, 907, 1063
BspHI TCATGA 1 cut(s) 967
BspLI GGNNCC 1 cut(s) 612
BspPI GGATC 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 864
BssECI CCNNGG 3 cut(s) 222, 536, 1120
BssMI GATC 4 cut(s) 305, 918, 1016, 1040
BssT1I CCWWGG 2 cut(s) 222, 1120
Bst2UI CCWGG 2 cut(s) 537, 704
Bst4CI ACNGT 1 cut(s) 753
Bst6I CTCTTC 1 cut(s) 864
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 6 cut(s) 398, 522, 813, 903, 915, 1071
BstF5I GGATG 3 cut(s) 92, 428, 1012
BstHHI GCGC 2 cut(s) 1062, 1119
BstKTI GATC 4 cut(s) 308, 921, 1019, 1043
BstMBI GATC 4 cut(s) 305, 918, 1016, 1040
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 2 cut(s) 537, 704
BstNSI RCATGY 3 cut(s) 170, 416, 987
BstSCI CCNGG 2 cut(s) 535, 702
BstSLI GKGCMC 1 cut(s) 614
BstV1I GCAGC 2 cut(s) 151, 1079
BstV2I GAAGAC 5 cut(s) 116, 679, 705, 723, 810
BstX2I RGATCY 2 cut(s) 305, 1016
BstYI RGATCY 2 cut(s) 305, 1016
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 3 cut(s) 145, 612, 1054
BtsCI GGATG 3 cut(s) 92, 428, 1012
BtsI GCAGTG 1 cut(s) 1055
BtsIMutI CAGTG 2 cut(s) 236, 1055
Cac8I GCNNGC 1 cut(s) 156
CciI TCATGA 1 cut(s) 967
CfoI GCGC 2 cut(s) 1062, 1119
Cfr13I GGNCC 2 cut(s) 610, 611
CseI GACGC 3 cut(s) 14, 121, 672
Csp6I GTAC 2 cut(s) 323, 512
CviAII CATG 5 cut(s) 167, 350, 413, 968, 984
CviQI GTAC 2 cut(s) 323, 512
DdeI CTNAG 6 cut(s) 398, 522, 813, 903, 915, 1071
DpnI GATC 4 cut(s) 307, 920, 1018, 1042
DpnII GATC 4 cut(s) 305, 918, 1016, 1040
DraI TTTAAA 1 cut(s) 862
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
EciI GGCGGA 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 222, 1120
Eco24I GRGCYC 1 cut(s) 614
Eco57I CTGAAG 5 cut(s) 735, 804, 822, 888, 1041
EcoO109I RGGNCCY 1 cut(s) 611
EcoRI GAATTC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 535, 702
EcoT14I CCWWGG 2 cut(s) 222, 1120
EcoT38I GRGCYC 1 cut(s) 614
ErhI CCWWGG 2 cut(s) 222, 1120
FaeI CATG 5 cut(s) 170, 353, 416, 971, 987
FaqI GGGAC 1 cut(s) 67
FatI CATG 5 cut(s) 166, 349, 412, 967, 983
Fnu4HI GCNGC 3 cut(s) 140, 143, 1068
FokI GGATG 3 cut(s) 99, 435, 1019
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 3 cut(s) 140, 143, 1068
FspBI CTAG 1 cut(s) 602
GlaI GCGC 2 cut(s) 1061, 1118
GluI GCNGC 3 cut(s) 140, 143, 1068
GsuI CTGGAG 2 cut(s) 63, 69
HaeIII GGCC 3 cut(s) 145, 612, 1054
HgaI GACGC 3 cut(s) 14, 121, 672
HhaI GCGC 2 cut(s) 1062, 1119
Hin1II CATG 5 cut(s) 170, 353, 416, 971, 987
Hin6I GCGC 2 cut(s) 1060, 1117
HinP1I GCGC 2 cut(s) 1060, 1117
HinfI GANTC 6 cut(s) 23, 185, 214, 542, 719, 977
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 5 cut(s) 28, 256, 814, 916, 1021
Hpy188III TCNNGA 3 cut(s) 314, 389, 968
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 6 cut(s) 70, 502, 640, 753, 837, 1069
HpyCH4III ACNGT 1 cut(s) 753
HpyCH4V TGCA 6 cut(s) 104, 353, 416, 683, 854, 952
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 6 cut(s) 398, 522, 813, 903, 915, 1071
Hsp92II CATG 5 cut(s) 170, 353, 416, 971, 987
HspAI GCGC 2 cut(s) 1060, 1117
Kzo9I GATC 4 cut(s) 305, 918, 1016, 1040
LguI GCTCTTC 1 cut(s) 864
LmnI GCTCC 2 cut(s) 38, 44
Lsp1109I GCAGC 2 cut(s) 151, 1079
LweI GCATC 2 cut(s) 413, 1104
MaeI CTAG 1 cut(s) 602
MaeIII GTNAC 4 cut(s) 128, 376, 880, 898
MalI GATC 4 cut(s) 307, 920, 1018, 1042
MboI GATC 4 cut(s) 305, 918, 1016, 1040
MfeI CAATTG 1 cut(s) 764
MflI RGATCY 2 cut(s) 305, 1016
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 8 cut(s) 179, 275, 334, 764, 931, 1031, 1095, 1101
MlyI GAGTC 1 cut(s) 713
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 7 cut(s) 44, 441, 451, 556, 624, 898, 997
MseI TTAA 6 cut(s) 570, 732, 861, 1080, 1104, 1126
MslI CAYNNNNRTG 3 cut(s) 421, 957, 972
MspA1I CMGCKG 3 cut(s) 36, 142, 1070
MspR9I CCNGG 2 cut(s) 537, 704
MunI CAATTG 1 cut(s) 764
MvaI CCWGG 2 cut(s) 537, 704
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 4 cut(s) 305, 918, 1016, 1040
NlaIII CATG 5 cut(s) 170, 353, 416, 971, 987
NlaIV GGNNCC 1 cut(s) 612
NmeAIII GCCGAG 1 cut(s) 1088
NmuCI GTSAC 1 cut(s) 376
NspI RCATGY 3 cut(s) 170, 416, 987
PagI TCATGA 1 cut(s) 967
PciI ACATGT 1 cut(s) 983
PciSI GCTCTTC 1 cut(s) 864
PfeI GAWTC 5 cut(s) 23, 185, 214, 542, 977
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 3 cut(s) 141, 144, 1069
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
PscI ACATGT 1 cut(s) 983
PshBI ATTAAT 1 cut(s) 1104
Psp6I CCWGG 2 cut(s) 535, 702
PspGI CCWGG 2 cut(s) 535, 702
PspN4I GGNNCC 1 cut(s) 612
PspOMI GGGCCC 1 cut(s) 610
PspPI GGNCC 2 cut(s) 610, 611
PsuI RGATCY 2 cut(s) 305, 1016
PvuII CAGCTG 1 cut(s) 1070
RsaI GTAC 2 cut(s) 324, 513
RsaNI GTAC 2 cut(s) 323, 512
RseI CAYNNNNRTG 3 cut(s) 421, 957, 972
SapI GCTCTTC 1 cut(s) 864
SaqAI TTAA 6 cut(s) 570, 732, 861, 1080, 1104, 1126
SatI GCNGC 3 cut(s) 140, 143, 1068
Sau3AI GATC 4 cut(s) 305, 918, 1016, 1040
Sau96I GGNCC 2 cut(s) 610, 611
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 2 cut(s) 537, 704
SduI GDGCHC 1 cut(s) 614
SfaNI GCATC 2 cut(s) 413, 1104
SmiMI CAYNNNNRTG 3 cut(s) 421, 957, 972
SmlI CTYRAG 3 cut(s) 301, 314, 667
SmoI CTYRAG 3 cut(s) 301, 314, 667
Sse9I AATT 8 cut(s) 179, 275, 334, 764, 931, 1031, 1095, 1101
SsiI CCGC 3 cut(s) 36, 142, 371
SspMI CTAG 1 cut(s) 602
StyD4I CCNGG 2 cut(s) 535, 702
StyI CCWWGG 2 cut(s) 222, 1120
TaaI ACNGT 1 cut(s) 753
TaqI TCGA 2 cut(s) 183, 388
TasI AATT 8 cut(s) 179, 275, 334, 764, 931, 1031, 1095, 1101
TatI WGTACW 1 cut(s) 322
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 5 cut(s) 23, 185, 214, 542, 977
Tru1I TTAA 6 cut(s) 570, 732, 861, 1080, 1104, 1126
Tru9I TTAA 6 cut(s) 570, 732, 861, 1080, 1104, 1126
TscAI CASTG 2 cut(s) 243, 1062
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 139, 1067
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 4 cut(s) 36, 257, 956, 984
TspRI CASTG 2 cut(s) 243, 1062
Van91I CCANNNNNTGG 1 cut(s) 367
VspI ATTAAT 1 cut(s) 1104
XapI RAATTY 3 cut(s) 334, 1031, 1095
XceI RCATGY 3 cut(s) 170, 416, 987
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XspI CTAG 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.