Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004142

Physical Location & Seq

Genomic Coordinates Forward (+)

59044560 .. 59078575

Gene Structure 34016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG315600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAAACTCACACACCAGTAGTGCTTCCCCCTAGATCTTCAAAGTATGCTAATATTGGGCTGAGAGTCCTCACCGCAACTTTGCTCTTCATGTCATTGGTCATCCTTGTCACCAATGTTAGGTCAAATTATCTGTACACGAAGAAGACACTTCACTTCTATGATCGTGTCGGATACCGGTACATGGCTTCCGCGGTTGTTATTGGACTTGCATATTCGATCTTGCAAACTGTAATTGCAGTTATCTGCATCAAAAAGTACGGTCAAGGAAACATCATCTTACTTGACTTCTACGGTGACAAGGTCGTATCAACTATAATAGCTACTGGAGCTGTTGCAGGGTTTGCTATGACTGGGGAACTTCAGAGAGTCATTGGAAAAGATTGGAGTGATTACTATTACAAATATTTCAGAACGTCTCACGCAGCAGGTGGACTTGCCTTCCTCGGATTTGTCTGCGCTTTCATATCATCCGTCATCTCCAAACTAAGTATGGATCAGCATATGTATTCAGAAAAACCAGCAGTGTTTACCCCCAGATTTCTAAAGATTTCTGCTATTGGGCTGAGGATCTTCACCACCATTTTCCTCTTTCTGTCACTCATCATCCTCATCACCAAAGTTACTACAGACGTGGTGGAAGTTACTGCAGACGGGGAGGCCAAGGATGACACACTTCACTTTTATGACCTTGTTGGATACCGATACATGACTGCCACAATTATTCTTGGATGTGCATATTCAATCTGGCAAACCGTGACAACAGTTATCCGCCTCAAGAAAGGATATGAGGGGAACCTTGTACTTGAATACTATGGGGATAAGGTTATGTCGATAGCATTAGCCACAGGATCGGTTGCAGGATTTATTATGACTGGAGAATTACAAAGAGTAATAGTTAGCAAAGGACATGGTGATTACATCCACAGGTATTTCAAAATGGGATATGCAGCTGATGGTTTCGTCTTCCTTGGATTCATTTGCGCTCTTATATTATCGGAACTCTCTTCATATGCACCCCCTAAGAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

344

Amino Acids

38.3

Weight (kDa)

9.24

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	13 - 153	4e-18	Casparian strip membrane protein domain
CASP_dom	PF04535	182 - 327	8e-13	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39518 AT2G39530
fragaria_vesca	FvH4_7g22200 FvH4_7g22201 FvH4_7g22210
malus_domestica	MD01G1126800.v1.1
prunus_persica	Prupe.2G233700_v2.0.a1 Prupe.2G233800_v2.0.a1 Prupe.2G233900_v2.0.a1 Prupe.2G234000_v2.0.a1
pyrus_communis	pycom01g15250
rosa_chinensis	RchiOBHm_Chr1g0366551 RchiOBHm_Chr1g0366591
rosa_laevigata	RLG00000027335 RLG00000027336 RLG00000027337
rosa_multiflora	Rmu_ssc0000250.1_g000028
rosa_roxburghii	Rroxscaffold_4G00289830 Rroxscaffold_4G00290090
rosa_rugosa	Rorug01G0330700 Rorug01G0330800
rosa_samantha	Rh1AG338700 Rh1AG339000 Rh1AG339100 Rh1BG300400 Rh1BG300700 Rh1CG315500 Rh1CG315600 Rh1DG332200 Rh1DG332400
rosa_wichuraiana	Rw1G030010 Rw1G030020 Rw1G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	419
AccII	CGCG	1 cut(s)	194
AciI	CCGC	4 cut(s)	75, 192, 194, 772
AclWI	GGATC	3 cut(s)	504, 578, 859
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	4 cut(s)	137, 182, 260, 804
AfiI	CCNNNNNNNGG	2 cut(s)	120, 184
AgeI	ACCGGT	1 cut(s)	177
AgsI	TTSAA	4 cut(s)	42, 744, 809, 937
AjiI	CACGTC	1 cut(s)	634
AluBI	AGCT	3 cut(s)	323, 332, 953
AluI	AGCT	3 cut(s)	323, 332, 953
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	3 cut(s)	504, 578, 859
AoxI	GGCC	1 cut(s)	660
ApeKI	GCWGC	2 cut(s)	425, 950
AsiGI	ACCGGT	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	461, 986
AsuHPI	GGTGA	6 cut(s)	64, 103, 308, 568, 607, 926
BbsI	GAAGAC	2 cut(s)	152, 958
BbvCI	CCTCAGC	1 cut(s)	566
BbvI	GCAGC	2 cut(s)	437, 962
BccI	CCATC	1 cut(s)	950
BciVI	GTATCC	2 cut(s)	167, 692
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	2 cut(s)	627, 648
BfuAI	ACCTGC	1 cut(s)	419
BfuI	GTATCC	2 cut(s)	167, 692
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	2 cut(s)	426, 951
BlsI	GCNGC	2 cut(s)	427, 952
BmgBI	CACGTC	1 cut(s)	634
BmiI	GGNNCC	1 cut(s)	797
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	363
BpiI	GAAGAC	2 cut(s)	152, 958
BpmI	CTGGAG	2 cut(s)	348, 897
Bpu10I	CCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	761
BsaJI	CCNNGG	4 cut(s)	192, 445, 663, 970
BsaWI	WCCGGW	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 184
Bse118I	RCCGGY	1 cut(s)	177
Bse1I	ACTGG	4 cut(s)	17, 331, 358, 880
BseDI	CCNNGG	4 cut(s)	192, 445, 663, 970
BseGI	GGATG	6 cut(s)	102, 470, 606, 673, 737, 921
BseLI	CCNNNNNNNGG	2 cut(s)	120, 184
BseMII	CTCAG	2 cut(s)	53, 557
BseNI	ACTGG	4 cut(s)	17, 331, 358, 880
BseXI	GCAGC	2 cut(s)	437, 962
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	662
BshTI	ACCGGT	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	120, 184
BsmAI	GTCTC	1 cut(s)	423
BsmBI	CGTCTC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	662
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	6 cut(s)	35, 163, 219, 496, 570, 851
BspACI	CCGC	4 cut(s)	75, 192, 194, 772
BspANI	GGCC	1 cut(s)	662
BspCNI	CTCAG	2 cut(s)	54, 558
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	797
BspMAI	CTGCAG	1 cut(s)	652
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	3 cut(s)	504, 578, 859
BspQI	GCTCTTC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	4 cut(s)	17, 331, 358, 880
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	4 cut(s)	192, 445, 663, 970
BssMI	GATC	6 cut(s)	35, 163, 219, 496, 570, 851
BssT1I	CCWWGG	2 cut(s)	663, 970
Bst4CI	ACNGT	5 cut(s)	232, 263, 296, 757, 766
Bst6I	CTCTTC	2 cut(s)	92, 1012
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	135
BstDEI	CTNAG	4 cut(s)	62, 488, 566, 1023
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	6 cut(s)	102, 470, 606, 673, 737, 921
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	461, 986
BstKTI	GATC	6 cut(s)	38, 166, 222, 499, 573, 854
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	6 cut(s)	35, 163, 219, 496, 570, 851
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 344
BstSFI	CTRYAG	2 cut(s)	627, 648
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	2 cut(s)	437, 962
BstV2I	GAAGAC	2 cut(s)	152, 958
BstX2I	RGATCY	2 cut(s)	35, 570
BstYI	RGATCY	2 cut(s)	35, 570
BsuI	GTATCC	2 cut(s)	167, 692
BsuRI	GGCC	1 cut(s)	662
BtgI	CCRYGG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	6 cut(s)	102, 470, 606, 673, 737, 921
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	1 cut(s)	419
CfoI	GCGC	2 cut(s)	461, 986
Cfr10I	RCCGGY	1 cut(s)	177
Cfr42I	CCGCGG	1 cut(s)	195
Csp6I	GTAC	4 cut(s)	136, 181, 259, 803
CspAI	ACCGGT	1 cut(s)	177
CviAII	CATG	4 cut(s)	91, 184, 709, 911
CviJI	RGCY	8 cut(s)	61, 188, 323, 332, 565, 662, 845, 953
CviKI_1	RGCY	8 cut(s)	61, 188, 323, 332, 565, 662, 845, 953
CviQI	GTAC	4 cut(s)	136, 181, 259, 803
DdeI	CTNAG	4 cut(s)	62, 488, 566, 1023
DpnI	GATC	6 cut(s)	37, 165, 221, 498, 572, 853
DpnII	GATC	6 cut(s)	35, 163, 219, 496, 570, 851
Eam1104I	CTCTTC	2 cut(s)	92, 1012
EarI	CTCTTC	2 cut(s)	92, 1012
EciI	GGCGGA	1 cut(s)	761
Eco130I	CCWWGG	2 cut(s)	663, 970
Eco57I	CTGAAG	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	663, 970
ErhI	CCWWGG	2 cut(s)	663, 970
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	4 cut(s)	94, 187, 712, 914
FatI	CATG	4 cut(s)	90, 183, 708, 910
FauNDI	CATATG	2 cut(s)	504, 1012
Fnu4HI	GCNGC	2 cut(s)	426, 951
FokI	GGATG	6 cut(s)	89, 457, 593, 680, 744, 908
Fsp4HI	GCNGC	2 cut(s)	426, 951
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	2 cut(s)	460, 985
GluI	GCNGC	2 cut(s)	426, 951
GsuI	CTGGAG	2 cut(s)	348, 897
HaeIII	GGCC	1 cut(s)	662
HapII	CCGG	1 cut(s)	178
HhaI	GCGC	2 cut(s)	461, 986
Hin1II	CATG	4 cut(s)	94, 187, 712, 914
Hin6I	GCGC	2 cut(s)	459, 984
HinP1I	GCGC	2 cut(s)	459, 984
HinfI	GANTC	3 cut(s)	66, 369, 975
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	6 cut(s)	64, 103, 308, 568, 607, 926
Hpy166II	GTNNAC	3 cut(s)	138, 434, 531
Hpy188I	TCNGA	6 cut(s)	173, 366, 413, 449, 514, 1000
Hpy188III	TCNNGA	1 cut(s)	778
Hpy8I	GTNNAC	3 cut(s)	138, 434, 531
HpyAV	CCTTC	1 cut(s)	451
HpyCH4III	ACNGT	5 cut(s)	232, 263, 296, 757, 766
HpyCH4IV	ACGT	2 cut(s)	416, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 344
HpyF3I	CTNAG	4 cut(s)	62, 488, 566, 1023
HpySE526I	ACGT	2 cut(s)	416, 633
Hsp92II	CATG	4 cut(s)	94, 187, 712, 914
HspAI	GCGC	2 cut(s)	459, 984
KspI	CCGCGG	1 cut(s)	195
Kzo9I	GATC	6 cut(s)	35, 163, 219, 496, 570, 851
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	2 cut(s)	437, 962
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	2 cut(s)	416, 633
MaeIII	GTNAC	6 cut(s)	109, 296, 597, 622, 643, 757
MalI	GATC	6 cut(s)	37, 165, 221, 498, 572, 853
MboI	GATC	6 cut(s)	35, 163, 219, 496, 570, 851
MboII	GAAGA	7 cut(s)	30, 79, 154, 157, 565, 958, 999
MflI	RGATCY	2 cut(s)	35, 570
MluCI	AATT	4 cut(s)	127, 234, 720, 881
MlyI	GAGTC	2 cut(s)	75, 378
MmeI	TCCRAC	2 cut(s)	151, 676
MnlI	CCTC	8 cut(s)	80, 455, 561, 599, 620, 652, 784, 785
MslI	CAYNNNNRTG	2 cut(s)	159, 684
MspA1I	CMGCKG	2 cut(s)	194, 953
MspI	CCGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	329, 344
NdeI	CATATG	2 cut(s)	504, 1012
NdeII	GATC	6 cut(s)	35, 163, 219, 496, 570, 851
NlaIII	CATG	4 cut(s)	94, 187, 712, 914
NlaIV	GGNNCC	1 cut(s)	797
NmuCI	GTSAC	4 cut(s)	109, 296, 597, 757
PaqCI	CACCTGC	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	975
PflFI	GACNNNGTC	1 cut(s)	302
PinAI	ACCGGT	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	427, 952
PleI	GAGTC	2 cut(s)	74, 377
PpsI	GAGTC	2 cut(s)	74, 377
PspN4I	GGNNCC	1 cut(s)	797
PstI	CTGCAG	1 cut(s)	652
PsuI	RGATCY	2 cut(s)	35, 570
PsyI	GACNNNGTC	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	4 cut(s)	137, 182, 260, 804
RsaNI	GTAC	4 cut(s)	136, 181, 259, 803
RseI	CAYNNNNRTG	2 cut(s)	159, 684
SacII	CCGCGG	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	92
SatI	GCNGC	2 cut(s)	426, 951
Sau3AI	GATC	6 cut(s)	35, 163, 219, 496, 570, 851
SchI	GAGTC	2 cut(s)	75, 378
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	2 cut(s)	627, 648
Sfr303I	CCGCGG	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	195
SmiMI	CAYNNNNRTG	2 cut(s)	159, 684
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse9I	AATT	4 cut(s)	127, 234, 720, 881
SsiI	CCGC	4 cut(s)	75, 192, 194, 772
SspI	AATATT	2 cut(s)	55, 407
SspMI	CTAG	1 cut(s)	33
StyI	CCWWGG	2 cut(s)	663, 970
TaaI	ACNGT	5 cut(s)	232, 263, 296, 757, 766
TaiI	ACGT	2 cut(s)	419, 636
TaqI	TCGA	2 cut(s)	218, 833
TasI	AATT	4 cut(s)	127, 234, 720, 881
TatI	WGTACW	2 cut(s)	135, 802
TfiI	GAWTC	1 cut(s)	975
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	4 cut(s)	109, 296, 597, 757
TseI	GCWGC	2 cut(s)	425, 950
Tsp45I	GTSAC	4 cut(s)	109, 296, 597, 757
TspDTI	ATGAA	4 cut(s)	79, 454, 967, 999
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	1 cut(s)	531
Tth111I	GACNNNGTC	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.