Belongs to the Casparian strip membrane proteins (CASP) family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39518 AT2G39530 |
| fragaria_vesca | FvH4_7g22200 FvH4_7g22201 FvH4_7g22210 |
| malus_domestica | MD01G1126800.v1.1 |
| prunus_persica | Prupe.2G233700_v2.0.a1 Prupe.2G233800_v2.0.a1 Prupe.2G233900_v2.0.a1 Prupe.2G234000_v2.0.a1 |
| pyrus_communis | pycom01g15250 |
| rosa_chinensis | RchiOBHm_Chr1g0366551 RchiOBHm_Chr1g0366591 |
| rosa_laevigata | RLG00000027335 RLG00000027336 RLG00000027337 |
| rosa_multiflora | Rmu_ssc0000250.1_g000028 |
| rosa_roxburghii | Rroxscaffold_4G00289830 Rroxscaffold_4G00290090 |
| rosa_rugosa | Rorug01G0330700 Rorug01G0330800 |
| rosa_samantha | Rh1AG338700 Rh1AG339000 Rh1AG339100 Rh1BG300400 Rh1BG300700 Rh1CG315500 Rh1CG315600 Rh1DG332200 Rh1DG332400 |
| rosa_wichuraiana | Rw1G030010 Rw1G030020 Rw1G030030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 225 |
| AciI | CCGC | 2 cut(s) | 223, 225 |
| AclWI | GGATC | 1 cut(s) | 151 |
| AfaI | GTAC | 1 cut(s) | 96 |
| AgsI | TTSAA | 3 cut(s) | 36, 101, 235 |
| AlwI | GGATC | 1 cut(s) | 151 |
| ApeKI | GCWGC | 1 cut(s) | 248 |
| AspLEI | GCGC | 1 cut(s) | 284 |
| AsuHPI | GGTGA | 1 cut(s) | 224 |
| BbsI | GAAGAC | 1 cut(s) | 256 |
| BbvI | GCAGC | 1 cut(s) | 260 |
| BccI | CCATC | 1 cut(s) | 248 |
| BisI | GCNGC | 1 cut(s) | 249 |
| BlsI | GCNGC | 1 cut(s) | 250 |
| BmiI | GGNNCC | 1 cut(s) | 89 |
| BpiI | GAAGAC | 1 cut(s) | 256 |
| BpmI | CTGGAG | 1 cut(s) | 189 |
| BpuEI | CTTGAG | 1 cut(s) | 53 |
| BsaJI | CCNNGG | 3 cut(s) | 19, 223, 268 |
| Bse1I | ACTGG | 2 cut(s) | 172, 214 |
| BseDI | CCNNGG | 3 cut(s) | 19, 223, 268 |
| BseNI | ACTGG | 2 cut(s) | 172, 214 |
| BseXI | GCAGC | 1 cut(s) | 260 |
| Bsh1236I | CGCG | 1 cut(s) | 225 |
| BslFI | GGGAC | 1 cut(s) | 302 |
| BsmFI | GGGAC | 1 cut(s) | 302 |
| Bsp143I | GATC | 1 cut(s) | 143 |
| BspACI | CCGC | 2 cut(s) | 223, 225 |
| BspFNI | CGCG | 1 cut(s) | 225 |
| BspLI | GGNNCC | 1 cut(s) | 89 |
| BspPI | GGATC | 1 cut(s) | 151 |
| BsrI | ACTGG | 2 cut(s) | 172, 214 |
| BssECI | CCNNGG | 3 cut(s) | 19, 223, 268 |
| BssMI | GATC | 1 cut(s) | 143 |
| BssT1I | CCWWGG | 2 cut(s) | 19, 268 |
| Bst4CI | ACNGT | 2 cut(s) | 49, 58 |
| Bst6I | CTCTTC | 1 cut(s) | 310 |
| BstDEI | CTNAG | 1 cut(s) | 321 |
| BstDSI | CCRYGG | 1 cut(s) | 223 |
| BstFNI | CGCG | 1 cut(s) | 225 |
| BstHHI | GCGC | 1 cut(s) | 284 |
| BstKTI | GATC | 1 cut(s) | 146 |
| BstMBI | GATC | 1 cut(s) | 143 |
| BstUI | CGCG | 1 cut(s) | 225 |
| BstV1I | GCAGC | 1 cut(s) | 260 |
| BstV2I | GAAGAC | 1 cut(s) | 256 |
| BtgI | CCRYGG | 1 cut(s) | 223 |
| CfoI | GCGC | 1 cut(s) | 284 |
| Cfr42I | CCGCGG | 1 cut(s) | 226 |
| Csp6I | GTAC | 1 cut(s) | 95 |
| CviJI | RGCY | 1 cut(s) | 188 |
| CviKI_1 | RGCY | 1 cut(s) | 188 |
| CviQI | GTAC | 1 cut(s) | 95 |
| DdeI | CTNAG | 1 cut(s) | 321 |
| DpnI | GATC | 1 cut(s) | 145 |
| DpnII | GATC | 1 cut(s) | 143 |
| Eam1104I | CTCTTC | 1 cut(s) | 310 |
| EarI | CTCTTC | 1 cut(s) | 310 |
| Eco130I | CCWWGG | 2 cut(s) | 19, 268 |
| EcoT14I | CCWWGG | 2 cut(s) | 19, 268 |
| ErhI | CCWWGG | 2 cut(s) | 19, 268 |
| FaiI | YATR | 9 cut(s) | 31, 81, 108, 122, 164, 246, 290, 310, 312 |
| FaqI | GGGAC | 1 cut(s) | 302 |
| FauI | CCCGC | 1 cut(s) | 218 |
| FauNDI | CATATG | 1 cut(s) | 310 |
| Fnu4HI | GCNGC | 1 cut(s) | 249 |
| Fsp4HI | GCNGC | 1 cut(s) | 249 |
| GlaI | GCGC | 1 cut(s) | 283 |
| GluI | GCNGC | 1 cut(s) | 249 |
| GsuI | CTGGAG | 1 cut(s) | 189 |
| HhaI | GCGC | 1 cut(s) | 284 |
| Hin6I | GCGC | 1 cut(s) | 282 |
| HinP1I | GCGC | 1 cut(s) | 282 |
| HincII | GTYRAC | 1 cut(s) | 199 |
| HindII | GTYRAC | 1 cut(s) | 199 |
| HinfI | GANTC | 1 cut(s) | 273 |
| HpaI | GTTAAC | 1 cut(s) | 199 |
| HphI | GGTGA | 1 cut(s) | 224 |
| Hpy166II | GTNNAC | 1 cut(s) | 199 |
| Hpy188I | TCNGA | 1 cut(s) | 298 |
| Hpy188III | TCNNGA | 1 cut(s) | 70 |
| Hpy8I | GTNNAC | 1 cut(s) | 199 |
| HpyCH4III | ACNGT | 2 cut(s) | 49, 58 |
| HpyCH4V | TGCA | 4 cut(s) | 29, 152, 248, 314 |
| HpyF3I | CTNAG | 1 cut(s) | 321 |
| HspAI | GCGC | 1 cut(s) | 282 |
| KspAI | GTTAAC | 1 cut(s) | 199 |
| KspI | CCGCGG | 1 cut(s) | 226 |
| Kzo9I | GATC | 1 cut(s) | 143 |
| LpnPI | CCDG | 5 cut(s) | 25, 126, 138, 153, 195 |
| Lsp1109I | GCAGC | 1 cut(s) | 260 |
| MaeIII | GTNAC | 1 cut(s) | 49 |
| MalI | GATC | 1 cut(s) | 145 |
| MboI | GATC | 1 cut(s) | 143 |
| MboII | GAAGA | 2 cut(s) | 256, 297 |
| MluCI | AATT | 1 cut(s) | 173 |
| MnlI | CCTC | 3 cut(s) | 17, 76, 77 |
| MseI | TTAA | 1 cut(s) | 198 |
| MspA1I | CMGCKG | 1 cut(s) | 225 |
| MvnI | CGCG | 1 cut(s) | 225 |
| NdeI | CATATG | 1 cut(s) | 310 |
| NdeII | GATC | 1 cut(s) | 143 |
| NlaIV | GGNNCC | 1 cut(s) | 89 |
| NmuCI | GTSAC | 1 cut(s) | 49 |
| PfeI | GAWTC | 1 cut(s) | 273 |
| PkrI | GCNGC | 1 cut(s) | 250 |
| PspN4I | GGNNCC | 1 cut(s) | 89 |
| RsaI | GTAC | 1 cut(s) | 96 |
| RsaNI | GTAC | 1 cut(s) | 95 |
| SacII | CCGCGG | 1 cut(s) | 226 |
| SaqAI | TTAA | 1 cut(s) | 198 |
| SatI | GCNGC | 1 cut(s) | 249 |
| Sau3AI | GATC | 1 cut(s) | 143 |
| SetI | ASST | 4 cut(s) | 28, 69, 93, 120 |
| Sfr303I | CCGCGG | 1 cut(s) | 226 |
| SgrBI | CCGCGG | 1 cut(s) | 226 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| Sse9I | AATT | 1 cut(s) | 173 |
| SsiI | CCGC | 2 cut(s) | 223, 225 |
| StyI | CCWWGG | 2 cut(s) | 19, 268 |
| TaaI | ACNGT | 2 cut(s) | 49, 58 |
| TaqI | TCGA | 1 cut(s) | 125 |
| TasI | AATT | 1 cut(s) | 173 |
| TatI | WGTACW | 1 cut(s) | 94 |
| TfiI | GAWTC | 1 cut(s) | 273 |
| Tru1I | TTAA | 1 cut(s) | 198 |
| Tru9I | TTAA | 1 cut(s) | 198 |
| TseFI | GTSAC | 1 cut(s) | 49 |
| TseI | GCWGC | 1 cut(s) | 248 |
| Tsp45I | GTSAC | 1 cut(s) | 49 |
| TspDTI | ATGAA | 2 cut(s) | 265, 297 |