Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004142

Physical Location & Seq

Genomic Coordinates Reverse (-)

16495819 .. 16497145

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39518.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCACCACCACCTCCTTCGCCACCAGCTGTTTCGTTGAAGGTTTTACTCCTTTTACTTAGGGTTTTAACAGGAGTTTTCCTTGTTATAGCGCTAATCATCCTCAGCACCAACAGTGTCACCATTGTATCTCAAGGAAGCGCATTGAAATTTCATTTCAAAGATGTTTATGCTTATAGATATATGCTTTCAGCTGCCGTCATTGGACTGGTTTACGCCGTCATACAACTGTTCTTCACAATCTCCGAATTCGCCACCGGAGTGAAAAACCCTTTTAATTATCAACTTGATTTTTACGGTGACAAGTTAATATCATACCTAGTGGCGACGGGTTCTGCAGCTGGATTTGGAGTGACCAAAGATTTGAAAGACACATTTCTAGCATTAGTCGCATTAGATTCGACTGATCCAGTGGATAAGTTCTTTAGCAAAGGCTACGCATCGGCCAGTCTTCTTCTCTTTGCTTTCATCTGTCTTGCTGTTTTATCTGTTTTCTCATCCTTTGCCATGGCCAAACGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

174

Amino Acids

18.8

Weight (kDa)

9.19

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	12 - 158	5.7e-21	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39518 AT2G39530
fragaria_vesca	FvH4_7g22200 FvH4_7g22201 FvH4_7g22210
malus_domestica	MD01G1126800.v1.1
prunus_persica	Prupe.2G233700_v2.0.a1 Prupe.2G233800_v2.0.a1 Prupe.2G233900_v2.0.a1 Prupe.2G234000_v2.0.a1
pyrus_communis	pycom01g15250
rosa_chinensis	RchiOBHm_Chr1g0366551 RchiOBHm_Chr1g0366591
rosa_laevigata	RLG00000027335 RLG00000027336 RLG00000027337
rosa_multiflora	Rmu_ssc0000250.1_g000028
rosa_roxburghii	Rroxscaffold_4G00289830 Rroxscaffold_4G00290090
rosa_rugosa	Rorug01G0330700 Rorug01G0330800
rosa_samantha	Rh1AG338700 Rh1AG339000 Rh1AG339100 Rh1BG300400 Rh1BG300700 Rh1CG315500 Rh1CG315600 Rh1DG332200 Rh1DG332400
rosa_wichuraiana	Rw1G030010 Rw1G030020 Rw1G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	2 cut(s)	444, 510
AcsI	RAATTY	2 cut(s)	149, 248
AfeI	AGCGCT	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	40, 148, 160, 367
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	3 cut(s)	29, 194, 341
AluI	AGCT	3 cut(s)	29, 194, 341
AlwI	GGATC	1 cut(s)	401
Aor51HI	AGCGCT	1 cut(s)	93
AoxI	GGCC	2 cut(s)	444, 510
ApeKI	GCWGC	2 cut(s)	194, 338
ApoI	RAATTY	2 cut(s)	149, 248
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AspLEI	GCGC	2 cut(s)	94, 143
AsuHPI	GGTGA	2 cut(s)	112, 311
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BalI	TGGCCA	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	443
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	181, 350
BceAI	ACGGC	2 cut(s)	182, 203
BcgI	CGANNNNNNTGC	2 cut(s)	381, 415
BfaI	CTAG	2 cut(s)	320, 380
BfmI	CTRYAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	95
BisI	GCNGC	2 cut(s)	195, 339
BlsI	GCNGC	2 cut(s)	196, 340
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	449
BpiI	GAAGAC	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	257
Bse1I	ACTGG	3 cut(s)	213, 410, 447
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	2 cut(s)	99, 497
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	3 cut(s)	213, 410, 447
BseXI	GCAGC	2 cut(s)	181, 350
BshFI	GGCC	2 cut(s)	446, 512
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	258
BsnI	GGCC	2 cut(s)	446, 512
Bsp143I	GATC	1 cut(s)	406
Bsp19I	CCATGG	1 cut(s)	507
BspANI	GGCC	2 cut(s)	446, 512
BspCNI	CTCAG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	3 cut(s)	213, 410, 447
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	116, 231, 299
BstDEI	CTNAG	2 cut(s)	59, 104
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	2 cut(s)	99, 497
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	94, 143
BstKTI	GATC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	181, 350
BstV2I	GAAGAC	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	446, 512
BtgI	CCRYGG	1 cut(s)	507
BtsCI	GGATG	2 cut(s)	99, 497
BtsIMutI	CAGTG	2 cut(s)	121, 417
CfoI	GCGC	2 cut(s)	94, 143
CviAII	CATG	1 cut(s)	508
CviJI	RGCY	6 cut(s)	29, 194, 341, 435, 446, 512
CviKI_1	RGCY	6 cut(s)	29, 194, 341, 435, 446, 512
DdeI	CTNAG	2 cut(s)	59, 104
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
EaeI	YGGCCR	2 cut(s)	444, 510
Eco130I	CCWWGG	1 cut(s)	507
Eco47III	AGCGCT	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	1 cut(s)	511
FaiI	YATR	8 cut(s)	89, 171, 177, 183, 185, 224, 316, 509
FatI	CATG	1 cut(s)	507
Fnu4HI	GCNGC	2 cut(s)	195, 339
FokI	GGATG	2 cut(s)	86, 484
Fsp4HI	GCNGC	2 cut(s)	195, 339
FspBI	CTAG	2 cut(s)	320, 380
GlaI	GCGC	2 cut(s)	93, 142
GluI	GCNGC	2 cut(s)	195, 339
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	446, 512
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	2 cut(s)	94, 143
Hin1II	CATG	1 cut(s)	511
Hin6I	GCGC	2 cut(s)	92, 141
HinP1I	GCGC	2 cut(s)	92, 141
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	2 cut(s)	112, 311
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	27, 34
HpyCH4III	ACNGT	3 cut(s)	116, 231, 299
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	2 cut(s)	59, 104
Hsp92II	CATG	1 cut(s)	511
HspAI	GCGC	2 cut(s)	92, 141
Kzo9I	GATC	1 cut(s)	406
LpnPI	CCDG	7 cut(s)	39, 57, 194, 271, 327, 423, 460
Lsp1109I	GCAGC	2 cut(s)	181, 350
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	2 cut(s)	320, 380
MaeIII	GTNAC	3 cut(s)	118, 299, 352
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	3 cut(s)	226, 443, 446
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	4 cut(s)	149, 248, 277, 520
MluNI	TGGCCA	1 cut(s)	512
MnlI	CCTC	2 cut(s)	24, 113
Mox20I	TGGCCA	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	4 cut(s)	68, 276, 308, 523
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	512
MspA1I	CMGCKG	3 cut(s)	29, 194, 341
MspI	CCGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	511
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	118, 299, 352
OliI	CACNNNNGTG	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	196, 340
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	340
PvuII	CAGCTG	3 cut(s)	29, 194, 341
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	4 cut(s)	68, 276, 308, 523
SatI	GCNGC	2 cut(s)	195, 339
Sau3AI	GATC	1 cut(s)	406
SetI	ASST	6 cut(s)	16, 31, 45, 196, 321, 343
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	4 cut(s)	149, 248, 277, 520
SspMI	CTAG	2 cut(s)	320, 380
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	3 cut(s)	116, 231, 299
TaqI	TCGA	1 cut(s)	401
TasI	AATT	4 cut(s)	149, 248, 277, 520
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	4 cut(s)	68, 276, 308, 523
Tru9I	TTAA	4 cut(s)	68, 276, 308, 523
TscAI	CASTG	2 cut(s)	121, 417
TseFI	GTSAC	3 cut(s)	118, 299, 352
TseI	GCWGC	2 cut(s)	194, 338
Tsp45I	GTSAC	3 cut(s)	118, 299, 352
TspDTI	ATGAA	2 cut(s)	143, 457
TspRI	CASTG	2 cut(s)	121, 417
XapI	RAATTY	2 cut(s)	149, 248
XspI	CTAG	2 cut(s)	320, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.