Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004142

Physical Location & Seq

Genomic Coordinates Forward (+)

25666767 .. 25668332

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G233800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCAGAAACAGAAGCAGCTGCACCGTTACCACCACCCCTGCCGCCGCCACCATTTTATTCCTCTGTATCTTCACGGCTTGCTTCTCTAATGTTGAGGATCATTACCTTCATTCTCTTATTAATATCCCTCATAGTGCTTGGCACCAACACCATGGAGATTAATCAGAGCAAACTTAGATTTCAGGACATTTATGCCTACCGATACATGCTTTCCACAATCGTCATTGGCACTGCATATTCTCTCTTGCAACTTGCATTGTCAATCCAGAATGTCGTAAGTGGCCAGGACGGCATTCTCCTACTCGATTTCTTTGGTGACAAGTTGATATCAAACCTTCTAGCAACTGGTACTGGGTTTGCCGTAACTGTAGACACAAAGCGATTGACGGACGCTGATCCTCGACTTGAGTCGATTGACATTCGGAAATTTTATGACAAGGCATATGCATCAGCTAGCCTCCTTCTCCTTGCATTTTGCTCCACTGCAATGTTATCCATCATCTCTTCCTATACACTCCCAAAGAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

178

Amino Acids

19.4

Weight (kDa)

7.79

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39518 AT2G39530
fragaria_vesca	FvH4_7g22200 FvH4_7g22201 FvH4_7g22210
malus_domestica	MD01G1126800.v1.1
prunus_persica	Prupe.2G233700_v2.0.a1 Prupe.2G233800_v2.0.a1 Prupe.2G233900_v2.0.a1 Prupe.2G234000_v2.0.a1
pyrus_communis	pycom01g15250
rosa_chinensis	RchiOBHm_Chr1g0366551 RchiOBHm_Chr1g0366591
rosa_laevigata	RLG00000027335 RLG00000027336 RLG00000027337
rosa_multiflora	Rmu_ssc0000250.1_g000028
rosa_roxburghii	Rroxscaffold_4G00289830 Rroxscaffold_4G00290090
rosa_rugosa	Rorug01G0330700 Rorug01G0330800
rosa_samantha	Rh1AG338700 Rh1AG339000 Rh1AG339100 Rh1BG300400 Rh1BG300700 Rh1CG315500 Rh1CG315600 Rh1DG332200 Rh1DG332400
rosa_wichuraiana	Rw1G030010 Rw1G030020 Rw1G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	2 cut(s)	44, 47
AclWI	GGATC	2 cut(s)	107, 392
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	428
AfaI	GTAC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	2 cut(s)	20, 455
AluI	AGCT	2 cut(s)	20, 455
AlwI	GGATC	2 cut(s)	107, 392
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	17, 20
ApoI	RAATTY	1 cut(s)	428
AseI	ATTAAT	2 cut(s)	122, 162
AsuHPI	GGTGA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	7, 29
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	3 cut(s)	92, 307, 347
BciT130I	CCWGG	1 cut(s)	287
BfaI	CTAG	2 cut(s)	341, 456
BfmI	CTRYAG	1 cut(s)	369
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	4 cut(s)	18, 21, 44, 47
BlsI	GCNGC	4 cut(s)	19, 22, 45, 48
Bme1390I	CCNGG	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	287
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	458
BmtI	GCTAGC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	363
BoxI	GACNNNNGTC	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	153
Bse1I	ACTGG	2 cut(s)	352, 358
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	352, 358
BseXI	GCAGC	2 cut(s)	7, 29
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	99, 397
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	44, 47
BspANI	GGCC	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	459
BspPI	GGATC	2 cut(s)	107, 392
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	495
BsrI	ACTGG	2 cut(s)	352, 358
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	99, 397
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	27, 370
Bst6I	CTCTTC	1 cut(s)	511
BstC8I	GCNNGC	2 cut(s)	81, 457
BstDEI	CTNAG	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	153
BstKTI	GATC	2 cut(s)	102, 400
BstMBI	GATC	2 cut(s)	99, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	211
BstPAI	GACNNNNGTC	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	7, 29
BstXI	CCANNNNNNTGG	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	153
BtsI	GCAGTG	2 cut(s)	231, 483
BtsIMutI	CAGTG	2 cut(s)	231, 483
Cac8I	GCNNGC	2 cut(s)	81, 457
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	2 cut(s)	154, 208
CviJI	RGCY	5 cut(s)	20, 79, 285, 455, 459
CviKI_1	RGCY	5 cut(s)	20, 79, 285, 455, 459
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	2 cut(s)	101, 399
DpnII	GATC	2 cut(s)	99, 397
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	285
EcoRV	GATATC	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	157, 211
FaiI	YATR	9 cut(s)	134, 155, 195, 209, 238, 435, 445, 447, 513
FatI	CATG	2 cut(s)	153, 207
FauNDI	CATATG	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	4 cut(s)	18, 21, 44, 47
Fsp4HI	GCNGC	4 cut(s)	18, 21, 44, 47
FspBI	CTAG	2 cut(s)	341, 456
GluI	GCNGC	4 cut(s)	18, 21, 44, 47
HaeIII	GGCC	1 cut(s)	285
HgaI	GACGC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	157, 211
HinfI	GANTC	1 cut(s)	410
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	168, 426
Hpy188III	TCNNGA	2 cut(s)	185, 268
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	3 cut(s)	118, 347, 473
HpyCH4III	ACNGT	2 cut(s)	27, 370
HpyCH4V	TGCA	7 cut(s)	23, 236, 250, 257, 449, 473, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	157, 211
Kzo9I	GATC	2 cut(s)	99, 397
LmnI	GCTCC	1 cut(s)	485
LpnPI	CCDG	7 cut(s)	53, 170, 272, 281, 299, 333, 339
Lsp1109I	GCAGC	2 cut(s)	7, 29
LweI	GCATC	1 cut(s)	458
MaeI	CTAG	2 cut(s)	341, 456
MaeIII	GTNAC	3 cut(s)	27, 317, 364
MalI	GATC	2 cut(s)	101, 399
MboI	GATC	2 cut(s)	99, 397
MboII	GAAGA	2 cut(s)	63, 498
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	1 cut(s)	428
MluNI	TGGCCA	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	5 cut(s)	73, 90, 140, 411, 470
Mox20I	TGGCCA	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	2 cut(s)	122, 162
MslI	CAYNNNNRTG	1 cut(s)	488
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	2 cut(s)	99, 397
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	2 cut(s)	157, 211
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	211
PctI	GAATGC	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	19, 22, 45, 48
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PshAI	GACNNNNGTC	1 cut(s)	409
PshBI	ATTAAT	2 cut(s)	122, 162
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	122, 162
SatI	GCNGC	4 cut(s)	18, 21, 44, 47
Sau3AI	GATC	2 cut(s)	99, 397
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	287
SetI	ASST	4 cut(s)	22, 110, 339, 457
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	1 cut(s)	428
SsiI	CCGC	2 cut(s)	44, 47
SspMI	CTAG	2 cut(s)	341, 456
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	27, 370
TaqI	TCGA	3 cut(s)	306, 403, 413
TasI	AATT	1 cut(s)	428
TauI	GCSGC	2 cut(s)	46, 49
Tru1I	TTAA	2 cut(s)	122, 162
Tru9I	TTAA	2 cut(s)	122, 162
TscAI	CASTG	2 cut(s)	238, 490
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	17, 20
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	2 cut(s)	238, 490
VspI	ATTAAT	2 cut(s)	122, 162
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	2 cut(s)	341, 456
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.