Rw1G030030

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004142
Physical Location & Seq
Forward (+)
57717403 .. 57733215
15813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G030030.1

Sequence Viewer

Length: 411 bp
ATGGATCAGCATAAGTATTCAGAAAAACCAGCAGTGTTTACCCCCAGACTTCTAAAGATTTCTGCAATAGGGCTGAGGATCCTCACCACCACTACTACAAAAAGTGCATATTCAATCTGGCAAACCGTGACAACAGTTATCCACCTCAAGAAAGGATATGAGGGGAACCATGTAATTGAATACTATGGGAATAAGGTTATGTCGATAGCATTGGCCACAGGATCGGTTGCAGGATTTGTTATGACTGGAGAATTACAAAGAGAAGCCTACAAAGTTAACAAAAGAACTGGTGATTACTTCCGCGGGTATTTCAAAATGGGATATGCAGCAGATGGTTTCGTCTTCCTTGGATTCATTTGCACCCTTATATTATCGGAACTCTCTTCATATGCAGTCCCTAAGAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

136

Amino Acids

15.29

Weight (kDa)

9.62

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 303
AciI CCGC 2 cut(s) 301, 303
AclWI GGATC 4 cut(s) 12, 73, 86, 229
AcoI YGGCCR 1 cut(s) 213
AgsI TTSAA 3 cut(s) 114, 179, 313
AlwI GGATC 4 cut(s) 12, 73, 86, 229
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 76, 302
BalI TGGCCA 1 cut(s) 215
BamHI GGATCC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 334
BbvCI CCTCAGC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 338
BccI CCATC 1 cut(s) 326
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
BmiI GGNNCC 2 cut(s) 80, 167
BpiI GAAGAC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 301, 346
Bse1I ACTGG 2 cut(s) 250, 292
BseDI CCNNGG 2 cut(s) 301, 346
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 2 cut(s) 250, 292
BseXI GCAGC 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 215
BslFI GGGAC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 1 cut(s) 215
Bsp143I GATC 3 cut(s) 4, 78, 221
BspACI CCGC 2 cut(s) 301, 303
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 66
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 80, 167
BspPI GGATC 4 cut(s) 12, 73, 86, 229
BsrI ACTGG 2 cut(s) 250, 292
BssECI CCNNGG 2 cut(s) 301, 346
BssMI GATC 3 cut(s) 4, 78, 221
BssT1I CCWWGG 1 cut(s) 346
Bst4CI ACNGT 2 cut(s) 127, 136
Bst6I CTCTTC 1 cut(s) 388
BstDEI CTNAG 2 cut(s) 74, 399
BstDSI CCRYGG 1 cut(s) 301
BstFNI CGCG 1 cut(s) 303
BstKTI GATC 3 cut(s) 7, 81, 224
BstMBI GATC 3 cut(s) 4, 78, 221
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 338
BstV2I GAAGAC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 301
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cfr42I CCGCGG 1 cut(s) 304
CviAII CATG 1 cut(s) 170
CviJI RGCY 3 cut(s) 73, 215, 266
CviKI_1 RGCY 3 cut(s) 73, 215, 266
DdeI CTNAG 2 cut(s) 74, 399
DpnI GATC 3 cut(s) 6, 80, 223
DpnII GATC 3 cut(s) 4, 78, 221
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 1 cut(s) 173
FaqI GGGAC 1 cut(s) 380
FatI CATG 1 cut(s) 169
FauI CCCGC 1 cut(s) 296
FauNDI CATATG 1 cut(s) 388
Fnu4HI GCNGC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 215
Hin1II CATG 1 cut(s) 173
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 1 cut(s) 351
HpaI GTTAAC 1 cut(s) 277
HphI GGTGA 2 cut(s) 76, 302
Hpy166II GTNNAC 2 cut(s) 39, 277
Hpy188I TCNGA 2 cut(s) 22, 376
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 2 cut(s) 39, 277
HpyCH4III ACNGT 2 cut(s) 127, 136
HpyCH4V TGCA 6 cut(s) 65, 107, 230, 326, 360, 392
HpyF3I CTNAG 2 cut(s) 74, 399
Hsp92II CATG 1 cut(s) 173
KspAI GTTAAC 1 cut(s) 277
KspI CCGCGG 1 cut(s) 304
Kzo9I GATC 3 cut(s) 4, 78, 221
LpnPI CCDG 7 cut(s) 42, 58, 103, 204, 216, 231, 273
Lsp1109I GCAGC 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 127
MalI GATC 3 cut(s) 6, 80, 223
MboI GATC 3 cut(s) 4, 78, 221
MboII GAAGA 2 cut(s) 334, 375
MflI RGATCY 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 2 cut(s) 174, 251
MluNI TGGCCA 1 cut(s) 215
MnlI CCTC 4 cut(s) 69, 92, 154, 155
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
MseI TTAA 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 303
MvnI CGCG 1 cut(s) 303
NdeI CATATG 1 cut(s) 388
NdeII GATC 3 cut(s) 4, 78, 221
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 2 cut(s) 80, 167
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 351
PkrI GCNGC 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 80, 167
PsuI RGATCY 1 cut(s) 78
SacII CCGCGG 1 cut(s) 304
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 3 cut(s) 4, 78, 221
SetI ASST 2 cut(s) 147, 198
Sfr303I CCGCGG 1 cut(s) 304
SgrBI CCGCGG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 174, 251
SsiI CCGC 2 cut(s) 301, 303
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 2 cut(s) 127, 136
TaqI TCGA 1 cut(s) 203
TasI AATT 2 cut(s) 174, 251
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 343, 375
TspRI CASTG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.