Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004142

Physical Location & Seq

Genomic Coordinates Forward (+)

17559891 .. 17561161

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGATCTGCATACGTATTCAGAAAAACCAGCAGCGTTTACCGCCAGTAGAGTTCTGAAAATTTCTGCTATTGCGCTGAGGATCCTCACCAACATTTTCCTGCTTCTGTCTCTCATCATCCTCATAACCAAAGTTAATGCAAACGGGCCGTTCAAGGATGACACAGTTCACTTTTATGAACTTGTTGGATACCGATACATGACTGCCACAATTATTCTTGGAGGTGCATATTCAATCTGGCAAACCATGACAGCAGTTATCCGCCACAAGAAAGGATATGAAGGAAACCTTGTACTTGACTACTATGGTGATAAGGTTATGTCGATAGCATTAGCCACAGGATCGGTTGCAGGATTCGTTATGACTGGAGAATTACAAAGAGAAGCCTACAAAGTTAGCAAAGATACTGGTGATTACTACCACAAGTTTTTCAAAATGGGATATGCAGCAGACGGTATCCTCCTCCTTGGATTCATTTGCGCACTTATATTATCGGAACTCTCTTCATACGCACTCCCTAGGAGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

177

Amino Acids

19.65

Weight (kDa)

9.06

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	17 - 159	5.5e-12	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39518 AT2G39530
fragaria_vesca	FvH4_7g22200 FvH4_7g22201 FvH4_7g22210
malus_domestica	MD01G1126800.v1.1
prunus_persica	Prupe.2G233700_v2.0.a1 Prupe.2G233800_v2.0.a1 Prupe.2G233900_v2.0.a1 Prupe.2G234000_v2.0.a1
pyrus_communis	pycom01g15250
rosa_chinensis	RchiOBHm_Chr1g0366551 RchiOBHm_Chr1g0366591
rosa_laevigata	RLG00000027335 RLG00000027336 RLG00000027337
rosa_multiflora	Rmu_ssc0000250.1_g000028
rosa_roxburghii	Rroxscaffold_4G00289830 Rroxscaffold_4G00290090
rosa_rugosa	Rorug01G0330700 Rorug01G0330800
rosa_samantha	Rh1AG338700 Rh1AG339000 Rh1AG339100 Rh1BG300400 Rh1BG300700 Rh1CG315500 Rh1CG315600 Rh1DG332200 Rh1DG332400
rosa_wichuraiana	Rw1G030010 Rw1G030020 Rw1G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	481
AciI	CCGC	2 cut(s)	42, 262
AclWI	GGATC	4 cut(s)	12, 76, 89, 349
AcsI	RAATTY	1 cut(s)	60
AfaI	GTAC	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	154, 234, 433
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	4 cut(s)	12, 76, 89, 349
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	2 cut(s)	32, 446
ApoI	RAATTY	1 cut(s)	60
AspA2I	CCTAGG	1 cut(s)	518
AspLEI	GCGC	2 cut(s)	76, 482
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	3 cut(s)	79, 320, 422
AvrII	CCTAGG	1 cut(s)	518
BamHI	GGATCC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	44, 458
BceAI	ACGGC	1 cut(s)	133
BciVI	GTATCC	2 cut(s)	182, 467
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	519
BfuI	GTATCC	2 cut(s)	182, 467
BisI	GCNGC	2 cut(s)	33, 447
BlnI	CCTAGG	1 cut(s)	518
BlsI	GCNGC	2 cut(s)	34, 448
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	466, 518
Bse1I	ACTGG	3 cut(s)	45, 370, 412
BseDI	CCNNGG	2 cut(s)	466, 518
BseGI	GGATG	2 cut(s)	117, 163
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	3 cut(s)	45, 370, 412
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	2 cut(s)	44, 458
BshFI	GGCC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	4, 81, 341
BspACI	CCGC	2 cut(s)	42, 262
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	4 cut(s)	12, 76, 89, 349
BsrI	ACTGG	3 cut(s)	45, 370, 412
BssECI	CCNNGG	2 cut(s)	466, 518
BssMI	GATC	3 cut(s)	4, 81, 341
BssT1I	CCWWGG	2 cut(s)	466, 518
Bst4CI	ACNGT	2 cut(s)	166, 455
Bst6I	CTCTTC	1 cut(s)	508
BstBAI	YACGTR	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	117, 163
BstHHI	GCGC	2 cut(s)	76, 482
BstKTI	GATC	3 cut(s)	7, 84, 344
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	4, 81, 341
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSNI	TACGTA	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	44, 458
BstX2I	RGATCY	2 cut(s)	4, 81
BstYI	RGATCY	2 cut(s)	4, 81
BsuI	GTATCC	2 cut(s)	182, 467
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	117, 163
CfoI	GCGC	2 cut(s)	76, 482
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	2 cut(s)	199, 247
CviJI	RGCY	3 cut(s)	148, 335, 386
CviKI_1	RGCY	3 cut(s)	148, 335, 386
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	3 cut(s)	6, 83, 343
DpnII	GATC	3 cut(s)	4, 81, 341
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	251
Eco105I	TACGTA	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	466, 518
EcoT14I	CCWWGG	2 cut(s)	466, 518
ErhI	CCWWGG	2 cut(s)	466, 518
FaeI	CATG	2 cut(s)	202, 250
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	2 cut(s)	198, 246
Fnu4HI	GCNGC	2 cut(s)	33, 447
FokI	GGATG	2 cut(s)	104, 170
Fsp4HI	GCNGC	2 cut(s)	33, 447
FspBI	CTAG	1 cut(s)	519
FspI	TGCGCA	1 cut(s)	481
GlaI	GCGC	2 cut(s)	75, 481
GluI	GCNGC	2 cut(s)	33, 447
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	76, 482
Hin1II	CATG	2 cut(s)	202, 250
Hin6I	GCGC	2 cut(s)	74, 480
HinP1I	GCGC	2 cut(s)	74, 480
HinfI	GANTC	2 cut(s)	354, 471
HphI	GGTGA	3 cut(s)	79, 320, 422
Hpy166II	GTNNAC	2 cut(s)	39, 169
Hpy188I	TCNGA	3 cut(s)	22, 57, 496
Hpy8I	GTNNAC	2 cut(s)	39, 169
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	2 cut(s)	166, 455
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	5 cut(s)	10, 140, 227, 350, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	202, 250
HspAI	GCGC	2 cut(s)	74, 480
Kzo9I	GATC	3 cut(s)	4, 81, 341
LpnPI	CCDG	8 cut(s)	42, 58, 113, 223, 324, 336, 351, 393
Lsp1109I	GCAGC	2 cut(s)	44, 458
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	1 cut(s)	14
MalI	GATC	3 cut(s)	6, 83, 343
MboI	GATC	3 cut(s)	4, 81, 341
MboII	GAAGA	1 cut(s)	495
MflI	RGATCY	2 cut(s)	4, 81
MluCI	AATT	3 cut(s)	60, 210, 371
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	6 cut(s)	72, 95, 131, 215, 470, 473
MseI	TTAA	2 cut(s)	135, 529
MslI	CAYNNNNRTG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	3 cut(s)	4, 81, 341
NlaIII	CATG	2 cut(s)	202, 250
NlaIV	GGNNCC	1 cut(s)	83
NsbI	TGCGCA	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	354, 471
PkrI	GCNGC	2 cut(s)	34, 448
Ppu21I	YACGTR	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	2 cut(s)	4, 81
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	135, 529
SatI	GCNGC	2 cut(s)	33, 447
Sau3AI	GATC	3 cut(s)	4, 81, 341
Sau96I	GGNCC	1 cut(s)	146
SetI	ASST	4 cut(s)	17, 226, 291, 318
SmiMI	CAYNNNNRTG	1 cut(s)	174
SnaBI	TACGTA	1 cut(s)	15
Sse9I	AATT	3 cut(s)	60, 210, 371
SsiI	CCGC	2 cut(s)	42, 262
SspMI	CTAG	1 cut(s)	519
StyI	CCWWGG	2 cut(s)	466, 518
TaaI	ACNGT	2 cut(s)	166, 455
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	60, 210, 371
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	2 cut(s)	354, 471
Tru1I	TTAA	2 cut(s)	135, 529
Tru9I	TTAA	2 cut(s)	135, 529
TseI	GCWGC	2 cut(s)	32, 446
TspDTI	ATGAA	4 cut(s)	192, 294, 463, 495
XapI	RAATTY	1 cut(s)	60
XmaJI	CCTAGG	1 cut(s)	518
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.