Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004142

Physical Location & Seq

Genomic Coordinates Forward (+)

15183861 .. 15184990

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAATCACAAACACCAGCGCCAGCACTCCTTTCTGTCAGAGCTTCCCAGTTTGTCATTCTTGGGCTGAGGGTCCTCACCTCCATTTTTCTAGTTGTGTCACTCGCCATCCTCCTCTCCAATGTTTTGTCTGGAGATCGAGATCACAAAGTACACTTTTATGATTTCGTGCCATACCGATACATGGCTGCAGCAATTGTTATTGGAATTGCATATTCACTCTTCCAAACAGCAGTTACAGTTATCCGCATGAGAAGAGAAAATCATAGGAGCATCTTACTGGACTTCTACGGTGACAAGGTTATATCAAATGTAGTAGCGACTGGAGCTGTTGCAGGATTTGTTATGACCGCACAAGTACAGAAAGACTGGAGCGAGTTAGTAGGTATTGACGCTTTCGACAAATATATCAAAAGGTCACATGCAGCAGATGGACTTGTCTTGCTTGCCTTCGTCTGCACTTTCATGTTATCCGTCCTCTCTTCCTATGCACTCCCGAAGAAGGTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

171

Amino Acids

18.82

Weight (kDa)

9.27

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39518 AT2G39530
fragaria_vesca	FvH4_7g22200 FvH4_7g22201 FvH4_7g22210
malus_domestica	MD01G1126800.v1.1
prunus_persica	Prupe.2G233700_v2.0.a1 Prupe.2G233800_v2.0.a1 Prupe.2G233900_v2.0.a1 Prupe.2G234000_v2.0.a1
pyrus_communis	pycom01g15250
rosa_chinensis	RchiOBHm_Chr1g0366551 RchiOBHm_Chr1g0366591
rosa_laevigata	RLG00000027335 RLG00000027336 RLG00000027337
rosa_multiflora	Rmu_ssc0000250.1_g000028
rosa_roxburghii	Rroxscaffold_4G00289830 Rroxscaffold_4G00290090
rosa_rugosa	Rorug01G0330700 Rorug01G0330800
rosa_samantha	Rh1AG338700 Rh1AG339000 Rh1AG339100 Rh1BG300400 Rh1BG300700 Rh1CG315500 Rh1CG315600 Rh1DG332200 Rh1DG332400
rosa_wichuraiana	Rw1G030010 Rw1G030020 Rw1G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	247, 351
AfaI	GTAC	2 cut(s)	153, 360
AfiI	CCNNNNNNNGG	2 cut(s)	184, 502
AluBI	AGCT	2 cut(s)	44, 329
AluI	AGCT	2 cut(s)	44, 329
ApeKI	GCWGC	3 cut(s)	188, 191, 425
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	70, 305
AvaII	GGWCC	1 cut(s)	73
BarI	GAAGNNNNNNTAC	1 cut(s)	491
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	175, 203, 437
BccI	CCATC	2 cut(s)	116, 425
BfaI	CTAG	2 cut(s)	92, 511
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	23
BisI	GCNGC	3 cut(s)	189, 192, 426
BlsI	GCNGC	3 cut(s)	190, 193, 427
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	74
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	43
BpmI	CTGGAG	3 cut(s)	153, 345, 391
Bpu10I	CCTNAGC	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 502
Bse1I	ACTGG	4 cut(s)	49, 285, 328, 374
Bse8I	GATNNNNATC	1 cut(s)	141
BseGI	GGATG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	184, 502
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	4 cut(s)	49, 285, 328, 374
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	3 cut(s)	175, 203, 437
BsgI	GTGCAG	1 cut(s)	442
BslI	CCNNNNNNNGG	2 cut(s)	184, 502
Bsp143I	GATC	2 cut(s)	136, 142
BspACI	CCGC	2 cut(s)	247, 351
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	193
BsrI	ACTGG	4 cut(s)	49, 285, 328, 374
BssMI	GATC	2 cut(s)	136, 142
Bst4CI	ACNGT	2 cut(s)	241, 293
Bst6I	CTCTTC	3 cut(s)	227, 250, 487
BstC8I	GCNNGC	2 cut(s)	24, 447
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	108
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	139, 145
BstMBI	GATC	2 cut(s)	136, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	175, 203, 437
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	24, 447
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	2 cut(s)	152, 359
CviAII	CATG	4 cut(s)	184, 250, 422, 466
CviJI	RGCY	4 cut(s)	44, 67, 188, 329
CviKI_1	RGCY	4 cut(s)	44, 67, 188, 329
CviQI	GTAC	2 cut(s)	152, 359
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	2 cut(s)	138, 144
DpnII	GATC	2 cut(s)	136, 142
Eam1104I	CTCTTC	3 cut(s)	227, 250, 487
EarI	CTCTTC	3 cut(s)	227, 250, 487
Eco47I	GGWCC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	73
FaeI	CATG	4 cut(s)	187, 253, 425, 469
FatI	CATG	4 cut(s)	183, 249, 421, 465
Fnu4HI	GCNGC	3 cut(s)	189, 192, 426
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	189, 192, 426
FspBI	CTAG	2 cut(s)	92, 511
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	189, 192, 426
GsuI	CTGGAG	3 cut(s)	153, 345, 391
HaeII	RGCGCY	1 cut(s)	23
HgaI	GACGC	1 cut(s)	401
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	4 cut(s)	187, 253, 425, 469
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	2 cut(s)	70, 305
Hpy166II	GTNNAC	2 cut(s)	154, 508
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	3 cut(s)	132, 140, 496
Hpy8I	GTNNAC	2 cut(s)	154, 508
HpyAV	CCTTC	2 cut(s)	460, 496
HpyCH4III	ACNGT	2 cut(s)	241, 293
HpyCH4V	TGCA	6 cut(s)	191, 212, 335, 425, 459, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	4 cut(s)	187, 253, 425, 469
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	136, 142
LmnI	GCTCC	3 cut(s)	270, 326, 372
LpnPI	CCDG	8 cut(s)	30, 36, 62, 117, 266, 309, 321, 355
Lsp1109I	GCAGC	3 cut(s)	175, 203, 437
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	2 cut(s)	92, 511
MaeIII	GTNAC	4 cut(s)	99, 235, 293, 417
MalI	GATC	2 cut(s)	138, 144
MboI	GATC	2 cut(s)	136, 142
MboII	GAAGA	4 cut(s)	214, 267, 474, 511
MfeI	CAATTG	1 cut(s)	195
MluCI	AATT	2 cut(s)	195, 207
MnlI	CCTC	6 cut(s)	63, 86, 91, 122, 125, 488
MslI	CAYNNNNRTG	2 cut(s)	159, 464
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	2 cut(s)	136, 142
NlaIII	CATG	4 cut(s)	187, 253, 425, 469
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	3 cut(s)	99, 293, 417
NspI	RCATGY	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	190, 193, 427
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	73
PspPPI	RGGWCCY	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	193
RsaI	GTAC	2 cut(s)	153, 360
RsaNI	GTAC	2 cut(s)	152, 359
RseI	CAYNNNNRTG	2 cut(s)	159, 464
SatI	GCNGC	3 cut(s)	189, 192, 426
Sau3AI	GATC	2 cut(s)	136, 142
Sau96I	GGNCC	1 cut(s)	73
SetI	ASST	7 cut(s)	46, 83, 303, 331, 388, 419, 507
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	159, 464
Sse9I	AATT	2 cut(s)	195, 207
SsiI	CCGC	2 cut(s)	247, 351
SspMI	CTAG	2 cut(s)	92, 511
TaaI	ACNGT	2 cut(s)	241, 293
TaqI	TCGA	2 cut(s)	139, 399
TasI	AATT	2 cut(s)	195, 207
TatI	WGTACW	2 cut(s)	151, 358
TfiI	GAWTC	1 cut(s)	5
TseFI	GTSAC	3 cut(s)	99, 293, 417
TseI	GCWGC	3 cut(s)	188, 191, 425
Tsp45I	GTSAC	3 cut(s)	99, 293, 417
TspDTI	ATGAA	1 cut(s)	454
TspGWI	ACGGA	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	73
XceI	RCATGY	1 cut(s)	425
XspI	CTAG	2 cut(s)	92, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.