Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004142

Physical Location & Seq

Genomic Coordinates Forward (+)

25670309 .. 25671129

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G233900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCAGAAACAGCTGCAACAATAGAAGAAGCTGCACCACCACCACCACCACGGCCGCCGCCACCATCTTATTCATCTGCATCTTTACGGCTTGCTTCTCTAATATTGAGGATCTTTACCTTCCTTCTCTTATTAATATCCCTAATAGTGCTTTGCACCAACACCGTGGATGTTTATCTGCAGAAACTTAGATTTCAGGATATTTATGCCTACCGATACATGCTTTCCACAATCGTCATTGGCACTGCATATTCTCTCTTGCAACTTGCATTGTCAATCCATAATGTCGTAAGTGGCCAGGACGGCATTCTCCTACTCGACTTCTTTGGTGACAAGTTGATATCATACCTTCTAGCAAGTGGTACTGGAGCAGGGTTTGCCATAACTGTAGACACAAAGAGATTGACGGATGCAGATCCTCTATTTGATATGATTGACATTCGCGAATTTTATGACAAGGCATATGCATCAGCTAGCCTCCTTCTCCTCGCATTTTGCTGCACTGCCATGTTATCCATCATCTCTTCCTATACACTCCCGAAGAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

184

Amino Acids

20.07

Weight (kDa)

5.27

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39518 AT2G39530
fragaria_vesca	FvH4_7g22200 FvH4_7g22201 FvH4_7g22210
malus_domestica	MD01G1126800.v1.1
prunus_persica	Prupe.2G233700_v2.0.a1 Prupe.2G233800_v2.0.a1 Prupe.2G233900_v2.0.a1 Prupe.2G234000_v2.0.a1
pyrus_communis	pycom01g15250
rosa_chinensis	RchiOBHm_Chr1g0366551 RchiOBHm_Chr1g0366591
rosa_laevigata	RLG00000027335 RLG00000027336 RLG00000027337
rosa_multiflora	Rmu_ssc0000250.1_g000028
rosa_roxburghii	Rroxscaffold_4G00289830 Rroxscaffold_4G00290090
rosa_rugosa	Rorug01G0330700 Rorug01G0330800
rosa_samantha	Rh1AG338700 Rh1AG339000 Rh1AG339100 Rh1BG300400 Rh1BG300700 Rh1CG315500 Rh1CG315600 Rh1DG332200 Rh1DG332400
rosa_wichuraiana	Rw1G030010 Rw1G030020 Rw1G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	1 cut(s)	444
AciI	CCGC	2 cut(s)	56, 59
AclWI	GGATC	2 cut(s)	119, 410
AcoI	YGGCCR	2 cut(s)	53, 295
AcsI	RAATTY	1 cut(s)	446
AfaI	GTAC	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	3 cut(s)	14, 32, 473
AluI	AGCT	3 cut(s)	14, 32, 473
AlwI	GGATC	2 cut(s)	119, 410
AoxI	GGCC	2 cut(s)	53, 295
ApeKI	GCWGC	3 cut(s)	14, 32, 498
ApoI	RAATTY	1 cut(s)	446
AseI	ATTAAT	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	341
AsuNHI	GCTAGC	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	19, 485
BccI	CCATC	2 cut(s)	73, 524
BceAI	ACGGC	3 cut(s)	68, 104, 319
BciT130I	CCWGG	1 cut(s)	299
BfaI	CTAG	2 cut(s)	353, 474
BfmI	CTRYAG	2 cut(s)	179, 387
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	5 cut(s)	15, 33, 56, 59, 499
BlsI	GCNGC	5 cut(s)	16, 34, 57, 60, 500
Bme1390I	CCNGG	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	3 cut(s)	89, 400, 476
BmtI	GCTAGC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	387
BsaBI	GATNNNNATC	2 cut(s)	174, 414
BsaJI	CCNNGG	2 cut(s)	50, 165
Bse1I	ACTGG	1 cut(s)	370
Bse8I	GATNNNNATC	2 cut(s)	174, 414
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	50, 165
BseGI	GGATG	2 cut(s)	175, 415
BseJI	GATNNNNATC	2 cut(s)	174, 414
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	476
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	19, 485
BsgI	GTGCAG	2 cut(s)	18, 484
Bsh1236I	CGCG	1 cut(s)	444
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	55, 297
BsiEI	CGRYCG	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	55, 297
Bsp143I	GATC	2 cut(s)	111, 415
Bsp68I	TCGCGA	1 cut(s)	444
BspACI	CCGC	2 cut(s)	56, 59
BspANI	GGCC	2 cut(s)	55, 297
BspFNI	CGCG	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	183
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	119, 410
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	50, 165
BssMI	GATC	2 cut(s)	111, 415
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	2 cut(s)	166, 388
Bst6I	CTCTTC	1 cut(s)	529
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	93, 475
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	2 cut(s)	50, 165
BstF5I	GGATG	2 cut(s)	175, 415
BstFNI	CGCG	1 cut(s)	444
BstKTI	GATC	2 cut(s)	114, 418
BstMBI	GATC	2 cut(s)	111, 415
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 377
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	2 cut(s)	179, 387
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	19, 485
BstX2I	RGATCY	2 cut(s)	111, 415
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	2 cut(s)	111, 415
BstZI	CGGCCG	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	55, 297
BtgI	CCRYGG	2 cut(s)	50, 165
BtsCI	GGATG	2 cut(s)	175, 415
BtsI	GCAGTG	2 cut(s)	243, 501
BtsIMutI	CAGTG	2 cut(s)	243, 501
BtuMI	TCGCGA	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	93, 475
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	2 cut(s)	220, 508
CviJI	RGCY	7 cut(s)	14, 32, 55, 91, 297, 473, 477
CviKI_1	RGCY	7 cut(s)	14, 32, 55, 91, 297, 473, 477
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	2 cut(s)	113, 417
DpnII	GATC	2 cut(s)	111, 415
EaeI	YGGCCR	2 cut(s)	53, 295
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	529
EclXI	CGGCCG	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	342
Eco52I	CGGCCG	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	297
EcoRV	GATATC	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	469
FaeI	CATG	2 cut(s)	223, 511
FatI	CATG	2 cut(s)	219, 507
FauNDI	CATATG	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	5 cut(s)	15, 33, 56, 59, 499
FokI	GGATG	2 cut(s)	182, 422
Fsp4HI	GCNGC	5 cut(s)	15, 33, 56, 59, 499
FspBI	CTAG	2 cut(s)	353, 474
GluI	GCNGC	5 cut(s)	15, 33, 56, 59, 499
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	55, 297
Hin1II	CATG	2 cut(s)	223, 511
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	3 cut(s)	197, 443, 538
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	4 cut(s)	130, 134, 359, 491
HpyCH4III	ACNGT	2 cut(s)	166, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 377
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	223, 511
Kzo9I	GATC	2 cut(s)	111, 415
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	5 cut(s)	182, 284, 311, 351, 357
Lsp1109I	GCAGC	2 cut(s)	19, 485
LweI	GCATC	3 cut(s)	89, 400, 476
MaeI	CTAG	2 cut(s)	353, 474
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	2 cut(s)	113, 417
MboI	GATC	2 cut(s)	111, 415
MboII	GAAGA	2 cut(s)	38, 516
MflI	RGATCY	2 cut(s)	111, 415
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	1 cut(s)	446
MluNI	TGGCCA	1 cut(s)	297
MnlI	CCTC	4 cut(s)	102, 429, 488, 497
Mox20I	TGGCCA	1 cut(s)	297
Mph1103I	ATGCAT	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	303, 377
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	2 cut(s)	111, 415
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	2 cut(s)	223, 511
NmuCI	GTSAC	1 cut(s)	329
NruI	TCGCGA	1 cut(s)	444
NsiI	ATGCAT	1 cut(s)	469
NspI	RCATGY	1 cut(s)	223
PctI	GAATGC	1 cut(s)	306
PkrI	GCNGC	5 cut(s)	16, 34, 57, 60, 500
PshBI	ATTAAT	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	183
PsuI	RGATCY	2 cut(s)	111, 415
PvuII	CAGCTG	1 cut(s)	14
RruI	TCGCGA	1 cut(s)	444
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	5 cut(s)	15, 33, 56, 59, 499
Sau3AI	GATC	2 cut(s)	111, 415
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	5 cut(s)	16, 34, 122, 351, 475
SfaNI	GCATC	3 cut(s)	89, 400, 476
SfcI	CTRYAG	2 cut(s)	179, 387
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	1 cut(s)	446
SsiI	CCGC	2 cut(s)	56, 59
SspI	AATATT	1 cut(s)	105
SspMI	CTAG	2 cut(s)	353, 474
StyD4I	CCNGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	166, 388
TaqI	TCGA	1 cut(s)	318
TasI	AATT	1 cut(s)	446
TauI	GCSGC	2 cut(s)	58, 61
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	2 cut(s)	250, 508
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	3 cut(s)	14, 32, 498
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	2 cut(s)	250, 508
VspI	ATTAAT	1 cut(s)	134
XapI	RAATTY	1 cut(s)	446
XceI	RCATGY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	2 cut(s)	353, 474
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.