Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004142

Physical Location & Seq

Genomic Coordinates Forward (+)

43577581 .. 43578724

Gene Structure 1144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG300700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGATCAGCATATGTATTCAGAAAAACCAGCAGTGTTTACCCCCAGATTTCTAAAGATTTCTGCTATTGGGCTGAGGATCTTCACCACCATTTTCCTCTTTCTGTCACTCATCATCCTCATCACCAAAGTTACTACAGACGTGGTGGAAGTTACTGCAGACGGGGAGGCCAAGGATGACACACTTCACTTTTATGACCTTGTTGGATACCGATACATGACTGCCACAATTATTCTTGGATGTGCATATTCAATCTGGCAAACCGTGACAACAGTTATCCGCCTCAAGAAAGGATATGAGGGGAACCTTGTACTTGAATACTATGGGGATAAGGTTATGTCGATAGCATTAGCCACAGGATCGGTTGCAGGATTTATTATGACTGGAGAATTACAAAGAGTAATAGTTAGCAAAGGACATGGTGATTACATCCACAGGTATTTCAAAATGGGATATGCAGCTGATGGTTTCGTCTTCCTTGGATTCATTTGCGCTCTTATATTATCGGAACTCTCTTCATATGCACCCCCTAAGAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

180

Amino Acids

20.19

Weight (kDa)

7.74

Isoelectric Point (pI)

22.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	18 - 164	1.3e-13	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39518 AT2G39530
fragaria_vesca	FvH4_7g22200 FvH4_7g22201 FvH4_7g22210
malus_domestica	MD01G1126800.v1.1
prunus_persica	Prupe.2G233700_v2.0.a1 Prupe.2G233800_v2.0.a1 Prupe.2G233900_v2.0.a1 Prupe.2G234000_v2.0.a1
pyrus_communis	pycom01g15250
rosa_chinensis	RchiOBHm_Chr1g0366551 RchiOBHm_Chr1g0366591
rosa_laevigata	RLG00000027335 RLG00000027336 RLG00000027337
rosa_multiflora	Rmu_ssc0000250.1_g000028
rosa_roxburghii	Rroxscaffold_4G00289830 Rroxscaffold_4G00290090
rosa_rugosa	Rorug01G0330700 Rorug01G0330800
rosa_samantha	Rh1AG338700 Rh1AG339000 Rh1AG339100 Rh1BG300400 Rh1BG300700 Rh1CG315500 Rh1CG315600 Rh1DG332200 Rh1DG332400
rosa_wichuraiana	Rw1G030010 Rw1G030020 Rw1G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	3 cut(s)	12, 86, 367
AfaI	GTAC	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	252, 317, 445
AjiI	CACGTC	1 cut(s)	142
AluBI	AGCT	1 cut(s)	461
AluI	AGCT	1 cut(s)	461
AlwI	GGATC	3 cut(s)	12, 86, 367
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	494
AsuHPI	GGTGA	3 cut(s)	76, 115, 434
BbsI	GAAGAC	1 cut(s)	466
BbvCI	CCTCAGC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	1 cut(s)	458
BciVI	GTATCC	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	135, 156
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmgBI	CACGTC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	466
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	171, 478
Bse1I	ACTGG	1 cut(s)	388
BseDI	CCNNGG	2 cut(s)	171, 478
BseGI	GGATG	4 cut(s)	114, 181, 245, 429
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	470
BshFI	GGCC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	4, 78, 359
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	305
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	3 cut(s)	12, 86, 367
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	171, 478
BssMI	GATC	3 cut(s)	4, 78, 359
BssT1I	CCWWGG	2 cut(s)	171, 478
Bst4CI	ACNGT	2 cut(s)	265, 274
Bst6I	CTCTTC	1 cut(s)	520
BstDEI	CTNAG	2 cut(s)	74, 531
BstF5I	GGATG	4 cut(s)	114, 181, 245, 429
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	3 cut(s)	7, 81, 362
BstMBI	GATC	3 cut(s)	4, 78, 359
BstSFI	CTRYAG	2 cut(s)	135, 156
BstV1I	GCAGC	1 cut(s)	470
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	170
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	4 cut(s)	114, 181, 245, 429
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	2 cut(s)	217, 419
CviJI	RGCY	4 cut(s)	73, 170, 353, 461
CviKI_1	RGCY	4 cut(s)	73, 170, 353, 461
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	74, 531
DpnI	GATC	3 cut(s)	6, 80, 361
DpnII	GATC	3 cut(s)	4, 78, 359
Eam1104I	CTCTTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	520
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	171, 478
EcoT14I	CCWWGG	2 cut(s)	171, 478
ErhI	CCWWGG	2 cut(s)	171, 478
FaeI	CATG	2 cut(s)	220, 422
FatI	CATG	2 cut(s)	216, 418
FauNDI	CATATG	2 cut(s)	12, 520
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	4 cut(s)	101, 188, 252, 416
Fsp4HI	GCNGC	1 cut(s)	459
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	2 cut(s)	220, 422
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HinfI	GANTC	1 cut(s)	483
HphI	GGTGA	3 cut(s)	76, 115, 434
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	22, 508
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	39
HpyCH4III	ACNGT	2 cut(s)	265, 274
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	158, 245, 368, 458, 524
HpyF3I	CTNAG	2 cut(s)	74, 531
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	220, 422
HspAI	GCGC	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	4, 78, 359
LpnPI	CCDG	7 cut(s)	42, 58, 241, 342, 354, 369, 421
Lsp1109I	GCAGC	1 cut(s)	470
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	4 cut(s)	105, 130, 151, 265
MalI	GATC	3 cut(s)	6, 80, 361
MboI	GATC	3 cut(s)	4, 78, 359
MboII	GAAGA	3 cut(s)	73, 466, 507
MflI	RGATCY	1 cut(s)	78
MluCI	AATT	2 cut(s)	228, 389
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	6 cut(s)	69, 107, 128, 160, 292, 293
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	461
NdeI	CATATG	2 cut(s)	12, 520
NdeII	GATC	3 cut(s)	4, 78, 359
NlaIII	CATG	2 cut(s)	220, 422
NlaIV	GGNNCC	1 cut(s)	305
NmuCI	GTSAC	2 cut(s)	105, 265
PfeI	GAWTC	1 cut(s)	483
PkrI	GCNGC	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	192
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	3 cut(s)	4, 78, 359
SetI	ASST	6 cut(s)	144, 201, 309, 336, 440, 463
SfcI	CTRYAG	2 cut(s)	135, 156
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	228, 389
SsiI	CCGC	1 cut(s)	280
StyI	CCWWGG	2 cut(s)	171, 478
TaaI	ACNGT	2 cut(s)	265, 274
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	341
TasI	AATT	2 cut(s)	228, 389
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	483
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	105, 265
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	2 cut(s)	105, 265
TspDTI	ATGAA	2 cut(s)	475, 507
TspRI	CASTG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.