Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004142

Physical Location & Seq

Genomic Coordinates Forward (+)

25664627 .. 25665752

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G233700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTCAACAAGCAACTGCATCCTCAAGGATTGCCTCTCTTATTTTGAGAATCTTGACCTTCATTCTCTTGTTGATATCACTCATTGTGCTGGCCACCAACACCATAGGCTCCAGCGACGATGACTCCAAAGTTCGTTTTACCGATTTTTATGCCTACCGATACATGCTTGCTACAATTGTCATCGGCAATGCATATAGTCTTCTGCAACTTGTACTCACAATCTTTAATATCGTAAGGGGCGGGGATGGCATGCCCTTCCTTGACTTCTTTGGTGACAAGTTCATATCATACGTGCTAGCAACTGGTGCTGCTGCTGGGTTTGGTCTGACTGTAGACTTGAAGAGACTGATGGACGCATCTGAAGTAGACATGCTCAACTTTGACGATAAGGCCTTTGCATCGGCTAGCCTCCTCCTCCTCGCATTTGTTACCACTGCCATATTATCAGTTATCTCTGCCTACACTCTCCCAAAGAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

162

Amino Acids

17.5

Weight (kDa)

5.18

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39518 AT2G39530
fragaria_vesca	FvH4_7g22200 FvH4_7g22201 FvH4_7g22210
malus_domestica	MD01G1126800.v1.1
prunus_persica	Prupe.2G233700_v2.0.a1 Prupe.2G233800_v2.0.a1 Prupe.2G233900_v2.0.a1 Prupe.2G234000_v2.0.a1
pyrus_communis	pycom01g15250
rosa_chinensis	RchiOBHm_Chr1g0366551 RchiOBHm_Chr1g0366591
rosa_laevigata	RLG00000027335 RLG00000027336 RLG00000027337
rosa_multiflora	Rmu_ssc0000250.1_g000028
rosa_roxburghii	Rroxscaffold_4G00289830 Rroxscaffold_4G00290090
rosa_rugosa	Rorug01G0330700 Rorug01G0330800
rosa_samantha	Rh1AG338700 Rh1AG339000 Rh1AG339100 Rh1BG300400 Rh1BG300700 Rh1CG315500 Rh1CG315600 Rh1DG332200 Rh1DG332400
rosa_wichuraiana	Rw1G030010 Rw1G030020 Rw1G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	336, 369
AciI	CCGC	1 cut(s)	243
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	340
AoxI	GGCC	2 cut(s)	93, 393
ApeKI	GCWGC	2 cut(s)	311, 314
AsuHPI	GGTGA	1 cut(s)	287
AsuNHI	GCTAGC	2 cut(s)	298, 407
BalI	TGGCCA	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	298, 301
BccI	CCATC	2 cut(s)	242, 346
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	2 cut(s)	299, 408
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	2 cut(s)	312, 315
BlsI	GCNGC	2 cut(s)	313, 316
BmiI	GGNNCC	1 cut(s)	112
BmsI	GCATC	3 cut(s)	29, 368, 410
BmtI	GCTAGC	2 cut(s)	302, 411
BpiI	GAAGAC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	10
BsaAI	YACGTR	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bse1I	ACTGG	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	20, 253
BseMI	GCAATG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	3 cut(s)	404, 407, 410
BseXI	GCAGC	2 cut(s)	298, 301
BseYI	CCCAGC	1 cut(s)	317
BshFI	GGCC	2 cut(s)	95, 395
BsmAI	GTCTC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	95, 395
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	2 cut(s)	95, 395
BspLI	GGNNCC	1 cut(s)	112
BspOI	GCTAGC	2 cut(s)	302, 411
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	5 cut(s)	93, 171, 254, 300, 409
BstF5I	GGATG	2 cut(s)	20, 253
BstMAI	GTCTC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 249, 308
BstNSI	RCATGY	3 cut(s)	169, 256, 376
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	298, 301
BstV2I	GAAGAC	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	95, 395
BtsCI	GGATG	2 cut(s)	20, 253
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	5 cut(s)	93, 171, 254, 300, 409
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	3 cut(s)	166, 253, 373
CviJI	RGCY	6 cut(s)	5, 95, 111, 395, 407, 411
CviKI_1	RGCY	6 cut(s)	5, 95, 111, 395, 407, 411
CviQI	GTAC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	395
Eco32I	GATATC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	384
EcoRV	GATATC	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	196
FaeI	CATG	3 cut(s)	169, 256, 376
FatI	CATG	3 cut(s)	165, 252, 372
FauI	CCCGC	1 cut(s)	236
FblI	GTMKAC	2 cut(s)	336, 369
Fnu4HI	GCNGC	2 cut(s)	312, 315
FokI	GGATG	2 cut(s)	7, 260
Fsp4HI	GCNGC	2 cut(s)	312, 315
FspBI	CTAG	2 cut(s)	299, 408
GluI	GCNGC	2 cut(s)	312, 315
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	95, 395
HgaI	GACGC	1 cut(s)	365
Hin1II	CATG	3 cut(s)	169, 256, 376
HinfI	GANTC	2 cut(s)	51, 125
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	337, 370
Hpy188I	TCNGA	2 cut(s)	330, 364
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	2 cut(s)	337, 370
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	70, 268
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	4 cut(s)	20, 194, 208, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 249, 308
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	169, 256, 376
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	4 cut(s)	77, 127, 291, 303
Lsp1109I	GCAGC	2 cut(s)	298, 301
LweI	GCATC	3 cut(s)	29, 368, 410
MaeI	CTAG	2 cut(s)	299, 408
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	2 cut(s)	275, 430
MboII	GAAGA	2 cut(s)	194, 355
MfeI	CAATTG	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	6 cut(s)	34, 46, 422, 425, 428, 431
Mox20I	TGGCCA	1 cut(s)	95
Mph1103I	ATGCAT	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	95
MunI	CAATTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	11, 249, 308
NheI	GCTAGC	2 cut(s)	298, 407
NlaIII	CATG	3 cut(s)	169, 256, 376
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	3 cut(s)	169, 256, 376
PaeI	GCATGC	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	313, 316
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	112
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	312, 315
SchI	GAGTC	1 cut(s)	119
SetI	ASST	2 cut(s)	62, 297
SfaNI	GCATC	3 cut(s)	29, 368, 410
SfcI	CTRYAG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SphI	GCATGC	1 cut(s)	256
Sse9I	AATT	1 cut(s)	177
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	2 cut(s)	299, 408
StuI	AGGCCT	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	297
TasI	AATT	1 cut(s)	177
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	311, 314
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	52, 274
TspRI	CASTG	1 cut(s)	442
XceI	RCATGY	3 cut(s)	169, 256, 376
XmiI	GTMKAC	2 cut(s)	336, 369
XspI	CTAG	2 cut(s)	299, 408
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.