Rh1AG338700

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004142
Physical Location & Seq
Forward (+)
57214801 .. 57215739
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG338700.1

Sequence Viewer

Length: 498 bp
ATGGCACAATTGTCCTCTGCATCTTCACGAACTGCCTCATTCATATTGAGGATCTTGGCCTTCGCTTTCTCACTCATATCACTCATAGTGCTCGCCACGAATACCGTAATTGCCATTGATTCCGATTATGATGAGTCCAAAGTTCATTTTCAGGATTTTTATGCCTACCGATACATGCTTGCTACGATCGTTATTGGTACCGCATATAGCCTCCTGCAGCTCGTGGCATCAATCTGTACTGCAGTATCTGGACGTGAGGGCATGCTTGTACTTGTTTTCTTTGGTGACAAGTTCATGTCCTATATGCTAGCCACCGGAGCTGCTGCTGGATTTGGTGTAACTGTAGACCTAAAACGAATCACGGATGCCGAGGGTTTAGAGATGAGCAAGTTCTATGAGAAGGCATATGCATCAGCTAGTCTCCTCCTGCTCGCTTTTATTTGCACTGCTGTGTTATCTATTATCTCTGCCTTTATACTCCCAAGGCGATCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

165

Amino Acids

17.92

Weight (kDa)

6.55

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 8 - 148 6.3e-22 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 345
AciI CCGC 1 cut(s) 201
AclWI GGATC 1 cut(s) 59
AfaI GTAC 3 cut(s) 199, 238, 270
AjiI CACGTC 1 cut(s) 254
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 3 cut(s) 220, 320, 416
AluI AGCT 3 cut(s) 220, 320, 416
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 248
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 217, 320, 323
Asp718I GGTACC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 296
AsuNHI GCTAGC 1 cut(s) 307
BaeI ACNNNNGTAYC 2 cut(s) 228, 261
BanI GGYRCC 1 cut(s) 197
BauI CACGAG 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 3 cut(s) 229, 307, 310
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 2 cut(s) 308, 417
BfmI CTRYAG 3 cut(s) 215, 240, 342
BisI GCNGC 3 cut(s) 218, 321, 324
BlsI GCNGC 3 cut(s) 219, 322, 325
BmgBI CACGTC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 4 cut(s) 29, 236, 355, 419
BmtI GCTAGC 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 369, 482
BsaWI WCCGGW 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 369, 482
BseGI GGATG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 229, 307, 310
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 425
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 3 cut(s) 51, 186, 488
BspACI CCGC 1 cut(s) 201
BspANI GGCC 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 199
BspMAI CTGCAG 2 cut(s) 219, 244
BspOI GCTAGC 1 cut(s) 311
BspPI GGATC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 369, 482
BssMI GATC 3 cut(s) 51, 186, 488
BssSI CACGAG 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 482
Bst2BI CACGAG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 106, 343
BstC8I GCNNGC 5 cut(s) 93, 180, 263, 309, 432
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 3 cut(s) 54, 189, 491
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 3 cut(s) 51, 186, 488
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNSI RCATGY 2 cut(s) 178, 265
BstSFI CTRYAG 3 cut(s) 215, 240, 342
BstV1I GCAGC 3 cut(s) 229, 307, 310
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 1 cut(s) 59
BtrI CACGTC 1 cut(s) 254
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 5 cut(s) 93, 180, 263, 309, 432
CaiI CAGNNNCTG 1 cut(s) 248
Csp6I GTAC 3 cut(s) 198, 237, 269
CviAII CATG 3 cut(s) 175, 262, 295
CviJI RGCY 6 cut(s) 59, 210, 220, 311, 320, 416
CviKI_1 RGCY 6 cut(s) 59, 210, 220, 311, 320, 416
CviQI GTAC 3 cut(s) 198, 237, 269
DpnI GATC 3 cut(s) 53, 188, 490
DpnII GATC 3 cut(s) 51, 186, 488
Eco130I CCWWGG 1 cut(s) 482
EcoT14I CCWWGG 1 cut(s) 482
EcoT22I ATGCAT 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 3 cut(s) 178, 265, 298
FatI CATG 3 cut(s) 174, 261, 294
FauNDI CATATG 1 cut(s) 406
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 218, 321, 324
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 3 cut(s) 218, 321, 324
FspBI CTAG 2 cut(s) 308, 417
GluI GCNGC 3 cut(s) 218, 321, 324
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 315
Hin1II CATG 3 cut(s) 178, 265, 298
HinfI GANTC 3 cut(s) 119, 134, 357
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 27, 152, 249
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 70, 394
HpyCH4III ACNGT 2 cut(s) 106, 343
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 5 cut(s) 20, 217, 242, 410, 444
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 3 cut(s) 178, 265, 298
KpnI GGTACC 1 cut(s) 201
Kzo9I GATC 3 cut(s) 51, 186, 488
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 6 cut(s) 137, 227, 234, 312, 328, 440
Lsp1109I GCAGC 3 cut(s) 229, 307, 310
LweI GCATC 4 cut(s) 29, 236, 355, 419
MaeI CTAG 2 cut(s) 308, 417
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 284, 337
MalI GATC 3 cut(s) 53, 188, 490
MboI GATC 3 cut(s) 51, 186, 488
MboII GAAGA 1 cut(s) 15
MfeI CAATTG 1 cut(s) 8
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 2 cut(s) 8, 108
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 7 cut(s) 25, 42, 46, 221, 250, 364, 434
Mph1103I ATGCAT 1 cut(s) 412
MslI CAYNNNNRTG 1 cut(s) 449
MspI CCGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeI CATATG 1 cut(s) 406
NdeII GATC 3 cut(s) 51, 186, 488
NheI GCTAGC 1 cut(s) 307
NlaIII CATG 3 cut(s) 178, 265, 298
NlaIV GGNNCC 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 284
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 2 cut(s) 178, 265
OliI CACNNNNGTG 1 cut(s) 449
PaeI GCATGC 1 cut(s) 265
PfeI GAWTC 2 cut(s) 119, 357
PkrI GCNGC 3 cut(s) 219, 322, 325
Ple19I CGATCG 1 cut(s) 189
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 199
PstI CTGCAG 2 cut(s) 219, 244
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 1 cut(s) 51
PvuI CGATCG 1 cut(s) 189
RsaI GTAC 3 cut(s) 199, 238, 270
RsaNI GTAC 3 cut(s) 198, 237, 269
RseI CAYNNNNRTG 1 cut(s) 449
SatI GCNGC 3 cut(s) 218, 321, 324
Sau3AI GATC 3 cut(s) 51, 186, 488
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 1 cut(s) 93
SetI ASST 5 cut(s) 222, 256, 322, 351, 418
SfaNI GCATC 4 cut(s) 29, 236, 355, 419
SfcI CTRYAG 3 cut(s) 215, 240, 342
SmiMI CAYNNNNRTG 1 cut(s) 449
SphI GCATGC 1 cut(s) 265
Sse9I AATT 2 cut(s) 8, 108
SsiI CCGC 1 cut(s) 201
SspMI CTAG 2 cut(s) 308, 417
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 106, 343
TaiI ACGT 1 cut(s) 256
TasI AATT 2 cut(s) 8, 108
TatI WGTACW 2 cut(s) 236, 268
TfiI GAWTC 2 cut(s) 119, 357
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 3 cut(s) 217, 320, 323
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 31, 134, 283
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 1 cut(s) 451
XceI RCATGY 2 cut(s) 178, 265
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 2 cut(s) 308, 417
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.