Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004142

Physical Location & Seq

Genomic Coordinates Forward (+)

25672617 .. 25673320

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G234000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAATCACAGAGACAAGTTTCAGTGCTTCCTCAAAAAACTTCCCGATTTGCCATTCTTGGGCTGAGGGTCCTCACCACCATTTTACTGGTTGTGCCACTCGCCATCCTCGTCTCCAATGTTCTCTCAGTCGACAGGGATCAAAAATATCACTTTTATGATTTTGTGCCTTACCGATACATGGCTGCCTCAAGTGTTATTGGAATTGCATTTTCAGTCTTCCAAACTGGAGTTGCAGTTGTCCGCCTCAGAAGAGAAAATCATGGGAACATCTTACTTGATTTCTATTGCGACAAGGTTATGTCAACTCTATTAGCTACTGGATCTGTTGCAGGATTTGTTATGACTGCACAATTACAGAAACAGTGGGGCGAAGCTGTAAGTGATTACTATCACAAATATTTCAAGAGGTCATATGCAGCAGATGGACTTGTCTTCCTTGCCTTCGTCTGCACTTTCATTCTGTCGGTCCTCTCTTCATATGCTCTGCCCAAGAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

168

Amino Acids

18.83

Weight (kDa)

9.52

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39518 AT2G39530
fragaria_vesca	FvH4_7g22200 FvH4_7g22201 FvH4_7g22210
malus_domestica	MD01G1126800.v1.1
prunus_persica	Prupe.2G233700_v2.0.a1 Prupe.2G233800_v2.0.a1 Prupe.2G233900_v2.0.a1 Prupe.2G234000_v2.0.a1
pyrus_communis	pycom01g15250
rosa_chinensis	RchiOBHm_Chr1g0366551 RchiOBHm_Chr1g0366591
rosa_laevigata	RLG00000027335 RLG00000027336 RLG00000027337
rosa_multiflora	Rmu_ssc0000250.1_g000028
rosa_roxburghii	Rroxscaffold_4G00289830 Rroxscaffold_4G00290090
rosa_rugosa	Rorug01G0330700 Rorug01G0330800
rosa_samantha	Rh1AG338700 Rh1AG339000 Rh1AG339100 Rh1BG300400 Rh1BG300700 Rh1CG315500 Rh1CG315600 Rh1DG332200 Rh1DG332400
rosa_wichuraiana	Rw1G030010 Rw1G030020 Rw1G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	2 cut(s)	147, 331
AfiI	CCNNNNNNNGG	2 cut(s)	60, 181
AgsI	TTSAA	1 cut(s)	406
AluBI	AGCT	2 cut(s)	317, 377
AluI	AGCT	2 cut(s)	317, 377
Alw26I	GTCTC	2 cut(s)	7, 118
AlwI	GGATC	2 cut(s)	147, 331
ApeKI	GCWGC	2 cut(s)	185, 419
AspS9I	GGNCC	2 cut(s)	70, 469
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	70, 469
BbsI	GAAGAC	2 cut(s)	211, 427
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	172, 431
BccI	CCATC	2 cut(s)	113, 419
BcoDI	GTCTC	2 cut(s)	7, 118
BisI	GCNGC	2 cut(s)	186, 420
BlsI	GCNGC	2 cut(s)	187, 421
Bme18I	GGWCC	2 cut(s)	70, 469
BmgT120I	GGNCC	2 cut(s)	70, 469
BmiI	GGNNCC	1 cut(s)	71
BpiI	GAAGAC	2 cut(s)	211, 427
BpmI	CTGGAG	1 cut(s)	249
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 181
Bse1I	ACTGG	3 cut(s)	93, 232, 325
Bse8I	GATNNNNATC	1 cut(s)	390
BseGI	GGATG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	60, 181
BseMII	CTCAG	3 cut(s)	56, 141, 262
BseNI	ACTGG	3 cut(s)	93, 232, 325
BseXI	GCAGC	2 cut(s)	172, 431
BsgI	GTGCAG	2 cut(s)	333, 436
BslI	CCNNNNNNNGG	2 cut(s)	60, 181
BsmAI	GTCTC	2 cut(s)	7, 118
BsmBI	CGTCTC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	139, 323
BspACI	CCGC	1 cut(s)	244
BspCNI	CTCAG	3 cut(s)	57, 140, 261
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	2 cut(s)	147, 331
BsrI	ACTGG	3 cut(s)	93, 232, 325
BssMI	GATC	2 cut(s)	139, 323
Bst4CI	ACNGT	1 cut(s)	366
Bst6I	CTCTTC	2 cut(s)	247, 481
BstDEI	CTNAG	3 cut(s)	65, 127, 248
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	142, 326
BstMAI	GTCTC	2 cut(s)	7, 118
BstMBI	GATC	2 cut(s)	139, 323
BstV1I	GCAGC	2 cut(s)	172, 431
BstV2I	GAAGAC	2 cut(s)	211, 427
BstX2I	RGATCY	1 cut(s)	323
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	30, 371
Cfr13I	GGNCC	2 cut(s)	70, 469
CviAII	CATG	2 cut(s)	181, 263
CviJI	RGCY	4 cut(s)	64, 185, 317, 377
CviKI_1	RGCY	4 cut(s)	64, 185, 317, 377
DdeI	CTNAG	3 cut(s)	65, 127, 248
DpnI	GATC	2 cut(s)	141, 325
DpnII	GATC	2 cut(s)	139, 323
Eam1104I	CTCTTC	2 cut(s)	247, 481
EarI	CTCTTC	2 cut(s)	247, 481
EciI	GGCGGA	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	70, 469
EcoO109I	RGGNCCY	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	2 cut(s)	184, 266
FaiI	YATR	9 cut(s)	159, 182, 264, 302, 344, 415, 417, 481, 483
FatI	CATG	2 cut(s)	180, 262
FauNDI	CATATG	2 cut(s)	415, 481
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	186, 420
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	186, 420
GluI	GCNGC	2 cut(s)	186, 420
GsuI	CTGGAG	1 cut(s)	249
Hin1II	CATG	2 cut(s)	184, 266
HincII	GTYRAC	2 cut(s)	133, 306
HindII	GTYRAC	2 cut(s)	133, 306
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	133, 306
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	2 cut(s)	45, 406
Hpy8I	GTNNAC	2 cut(s)	133, 306
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4V	TGCA	6 cut(s)	209, 236, 332, 350, 419, 453
HpyF3I	CTNAG	3 cut(s)	65, 127, 248
Hsp92II	CATG	2 cut(s)	184, 266
Kzo9I	GATC	2 cut(s)	139, 323
LpnPI	CCDG	5 cut(s)	74, 121, 213, 306, 318
Lsp1109I	GCAGC	2 cut(s)	172, 431
MalI	GATC	2 cut(s)	141, 325
MboI	GATC	2 cut(s)	139, 323
MboII	GAAGA	4 cut(s)	211, 264, 427, 468
MflI	RGATCY	1 cut(s)	323
MluCI	AATT	2 cut(s)	204, 353
MnlI	CCTC	8 cut(s)	42, 60, 83, 119, 199, 257, 402, 482
MslI	CAYNNNNRTG	1 cut(s)	156
NdeI	CATATG	2 cut(s)	415, 481
NdeII	GATC	2 cut(s)	139, 323
NlaIII	CATG	2 cut(s)	184, 266
NlaIV	GGNNCC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	187, 421
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	2 cut(s)	70, 469
PspPPI	RGGWCCY	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	131
SatI	GCNGC	2 cut(s)	186, 420
Sau3AI	GATC	2 cut(s)	139, 323
Sau96I	GGNCC	2 cut(s)	70, 469
SetI	ASST	4 cut(s)	300, 319, 379, 413
SinI	GGWCC	2 cut(s)	70, 469
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	2 cut(s)	204, 353
SsiI	CCGC	1 cut(s)	244
SspI	AATATT	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	132
TaqII	GACCGA	1 cut(s)	457
TasI	AATT	2 cut(s)	204, 353
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	2 cut(s)	30, 371
TseI	GCWGC	2 cut(s)	185, 419
TspDTI	ATGAA	2 cut(s)	448, 468
TspRI	CASTG	2 cut(s)	30, 371
VpaK11BI	GGWCC	2 cut(s)	70, 469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.