Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000250.1

Orthogroup ID

OG0004142

Physical Location & Seq

Genomic Coordinates Forward (+)

149997 .. 150600

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000250.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgcttgctacgatcgttattggtaccgcatatagcctcctgcagctcgtggcatcaatctgtactgcagtatctggacgcgagggcatgcttgtacttgctttctttggtgacaagttcatgtcctatgtgctagccaccggagctgctgctggatttggtgtaactgtagacctaaaacgaatcacggatgccgagggtttagagatgagcaagttctatgagaaggcatatgcatcagctagtctcctcttgctcgcttttatttgcactgctgtgttatctattatctctgcctttatactcccaaggcgatcactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

107

Amino Acids

11.34

Weight (kDa)

7.75

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39518 AT2G39530
fragaria_vesca	FvH4_7g22200 FvH4_7g22201 FvH4_7g22210
malus_domestica	MD01G1126800.v1.1
prunus_persica	Prupe.2G233700_v2.0.a1 Prupe.2G233800_v2.0.a1 Prupe.2G233900_v2.0.a1 Prupe.2G234000_v2.0.a1
pyrus_communis	pycom01g15250
rosa_chinensis	RchiOBHm_Chr1g0366551 RchiOBHm_Chr1g0366591
rosa_laevigata	RLG00000027335 RLG00000027336 RLG00000027337
rosa_multiflora	Rmu_ssc0000250.1_g000028
rosa_roxburghii	Rroxscaffold_4G00289830 Rroxscaffold_4G00290090
rosa_rugosa	Rorug01G0330700 Rorug01G0330800
rosa_samantha	Rh1AG338700 Rh1AG339000 Rh1AG339100 Rh1BG300400 Rh1BG300700 Rh1CG315500 Rh1CG315600 Rh1DG332200 Rh1DG332400
rosa_wichuraiana	Rw1G030010 Rw1G030020 Rw1G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	27
AfaI	GTAC	3 cut(s)	25, 64, 96
AleI	CACNNNNGTG	1 cut(s)	275
AluBI	AGCT	3 cut(s)	46, 146, 242
AluI	AGCT	3 cut(s)	46, 146, 242
Alw26I	GTCTC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	74
ApeKI	GCWGC	3 cut(s)	43, 146, 149
Asp718I	GGTACC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	122
AsuNHI	GCTAGC	1 cut(s)	133
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BanI	GGYRCC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	55, 133, 136
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	2 cut(s)	134, 243
BfmI	CTRYAG	3 cut(s)	41, 66, 168
BisI	GCNGC	3 cut(s)	44, 147, 150
BlsI	GCNGC	3 cut(s)	45, 148, 151
BmiI	GGNNCC	1 cut(s)	25
BmsI	GCATC	3 cut(s)	62, 181, 245
BmtI	GCTAGC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	195, 308
BsaWI	WCCGGW	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	195, 308
BseGI	GGATG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	55, 133, 136
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	12, 314
BspACI	CCGC	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	25
BspMAI	CTGCAG	2 cut(s)	45, 70
BspOI	GCTAGC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	195, 308
BssMI	GATC	2 cut(s)	12, 314
BssSI	CACGAG	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	169
BstC8I	GCNNGC	4 cut(s)	6, 89, 135, 258
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	15, 317
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	12, 314
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	91
BstSFI	CTRYAG	3 cut(s)	41, 66, 168
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	55, 133, 136
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	4 cut(s)	6, 89, 135, 258
CaiI	CAGNNNCTG	1 cut(s)	74
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	3 cut(s)	24, 63, 95
CviAII	CATG	2 cut(s)	88, 121
CviJI	RGCY	5 cut(s)	36, 46, 137, 146, 242
CviKI_1	RGCY	5 cut(s)	36, 46, 137, 146, 242
CviQI	GTAC	3 cut(s)	24, 63, 95
DpnI	GATC	2 cut(s)	14, 316
DpnII	GATC	2 cut(s)	12, 314
Eco130I	CCWWGG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	308
EcoT22I	ATGCAT	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	2 cut(s)	91, 124
FaiI	YATR	9 cut(s)	31, 33, 89, 122, 129, 222, 232, 234, 302
FatI	CATG	2 cut(s)	87, 120
FauNDI	CATATG	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	44, 147, 150
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	44, 147, 150
FspBI	CTAG	2 cut(s)	134, 243
GluI	GCNGC	3 cut(s)	44, 147, 150
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	91, 124
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	43, 68, 236, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	91, 124
KpnI	GGTACC	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	12, 314
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	4 cut(s)	53, 60, 138, 154
Lsp1109I	GCAGC	3 cut(s)	55, 133, 136
LweI	GCATC	3 cut(s)	62, 181, 245
MaeI	CTAG	2 cut(s)	134, 243
MaeIII	GTNAC	2 cut(s)	110, 163
MalI	GATC	2 cut(s)	14, 316
MboI	GATC	2 cut(s)	12, 314
MnlI	CCTC	4 cut(s)	47, 76, 190, 260
Mph1103I	ATGCAT	1 cut(s)	238
MslI	CAYNNNNRTG	1 cut(s)	275
MspI	CCGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	2 cut(s)	12, 314
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	91, 124
NlaIV	GGNNCC	1 cut(s)	25
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	91
OliI	CACNNNNGTG	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	45, 148, 151
Ple19I	CGATCG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	25
PstI	CTGCAG	2 cut(s)	45, 70
PstNI	CAGNNNCTG	1 cut(s)	74
PvuI	CGATCG	1 cut(s)	15
RsaI	GTAC	3 cut(s)	25, 64, 96
RsaNI	GTAC	3 cut(s)	24, 63, 95
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	3 cut(s)	44, 147, 150
Sau3AI	GATC	2 cut(s)	12, 314
SetI	ASST	4 cut(s)	48, 148, 177, 244
SfaNI	GCATC	3 cut(s)	62, 181, 245
SfcI	CTRYAG	3 cut(s)	41, 66, 168
SmiMI	CAYNNNNRTG	1 cut(s)	275
SphI	GCATGC	1 cut(s)	91
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	2 cut(s)	134, 243
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	169
TatI	WGTACW	2 cut(s)	62, 94
TfiI	GAWTC	1 cut(s)	183
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	3 cut(s)	43, 146, 149
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	277
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	2 cut(s)	134, 243
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.