Rroxscaffold_4G00289840

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007025
Physical Location & Seq
Reverse (-)
10491230 .. 10493051
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289840.1

Sequence Viewer

Length: 1101 bp
ATGGTTTTCTCATCCATTCCCGGCTATCTGGATCCACCCAACTGGCAGCAACAGCAATCCACTCATCATCAACAACAAGGAGGTGGCACGGATCAGAATCCCCATCTTCTTCCACCACCACCACCACCTTCCGGAGGACCTGGAGATGCTGGTAACGGCGCAGCAGGCACGATTAGACCTGGATCGATGTCTGATCTTGCCAGACAGGCCAAGTTGCCGCAGCCCGAGACAGCCCTAAAATGCCCTCGATGCGAATCCACAAACACCAAGTTTTGCTACTTCAACAATTACAGCCTGACGCAGCCGCGCCACTTCTGCAAGACCTGTCGGCGCTACTGGACCAGAGGAGGAGCGCTCAGAAGTGTGCCGGTCGGTGGAGGCTGCAGAAGGAACAAAAGGAGCAAAAGGTCAAAATCACCAGCGTCGGCATCAGCAGCAGATCATCATCATCAGCGCCAAGGCGGAGCTGGTTCGAGCTCCAGCACAGTTTCCAACTCCAACAGCTGCAGTACTAGTGAAAATATCTTAGGCCATTTGGCTCCTCCTCCACATCAGTTTCCCTTTCTGCCCTCTTTACATCATCTAAGTGATTATAGTTCCGGCGGCTTAAGTTTCGGGGGGATTCAACAACCTTCTGGTGTTGAATTCCATAGTCAGAATATTGGTGCTAATGGAAATAGTGGTGGTGTTGGGTCTATCTTGTCAACTGGTCTGGCTGAGCATTGGAGATCATCACTTCAGCATCATCAAGTTCAACAAGGGCAGCAATTTCCTGTCTTGGTTAATTTGGAGCCACCAAGTAGTCATAACTTATACCAGTTTGAAGGTAATCAAAATAATGCTCACGATACAGCAAGCTATGGAAGAGGAGCTGGTCAGCTCCTTTCTAAGCCATTAGTGGATTCAAGCATTGGGGCTACTCAGGTGGCTAATGTGAAAATGGAAGAAAGCCAAGCATTGAATATGTCAAGAAATTTTTTGGGTAGTCTTGGAAATGATCATCATCAGCAATACTGGGGTAGTACTACTACTGCTGGTGGCATTAATAATGCTTGGACTGATCTTTCAGGTTTCACTTCTTCTACCAGTCATCTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

366

Amino Acids

39.03

Weight (kDa)

9.0

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 78 - 133 4.2e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1099
AccII CGCG 1 cut(s) 307
AccIII TCCGGA 1 cut(s) 131
AciI CCGC 4 cut(s) 218, 305, 462, 603
AclWI GGATC 4 cut(s) 26, 39, 99, 190
AcsI RAATTY 2 cut(s) 644, 973
AcuI CTGAAG 1 cut(s) 722
AfaI GTAC 2 cut(s) 511, 1024
AfeI AGCGCT 1 cut(s) 354
AfiI CCNNNNNNNGG 3 cut(s) 131, 134, 374
AflII CTTAAG 1 cut(s) 607
AgsI TTSAA 7 cut(s) 283, 626, 644, 755, 824, 906, 961
AhlI ACTAGT 1 cut(s) 512
AjnI CCWGG 2 cut(s) 139, 178
AluBI AGCT 6 cut(s) 467, 477, 504, 858, 872, 880
AluI AGCT 6 cut(s) 467, 477, 504, 858, 872, 880
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 4 cut(s) 26, 39, 99, 190
Ama87I CYCGRG 1 cut(s) 224
Aor13HI TCCGGA 1 cut(s) 131
Aor51HI AGCGCT 1 cut(s) 354
AoxI GGCC 2 cut(s) 207, 529
ApeKI GCWGC 8 cut(s) 46, 161, 220, 301, 381, 434, 504, 763
ApoI RAATTY 2 cut(s) 644, 973
AseI ATTAAT 1 cut(s) 1044
AspLEI GCGC 5 cut(s) 161, 309, 333, 355, 456
AspS9I GGNCC 2 cut(s) 137, 339
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 408
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 2 cut(s) 137, 339
BamHI GGATCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 8 cut(s) 58, 173, 232, 313, 368, 446, 491, 775
BccI CCATC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 2 cut(s) 141, 180
BclI TGATCA 1 cut(s) 997
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 2 cut(s) 382, 505
BfoI RGCGCY 3 cut(s) 334, 356, 457
BfrI CTTAAG 1 cut(s) 607
BglI GCCNNNNNGGC 1 cut(s) 206
BlpI GCTNAGC 1 cut(s) 717
BmcAI AGTACT 2 cut(s) 511, 1024
Bme1390I CCNGG 3 cut(s) 21, 141, 180
Bme18I GGWCC 2 cut(s) 137, 339
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 137, 339
BmiI GGNNCC 3 cut(s) 33, 540, 792
BmrFI CCNGG 3 cut(s) 21, 141, 180
BmrI ACTGGG 1 cut(s) 1024
BmsI GCATC 4 cut(s) 136, 239, 437, 751
BmuI ACTGGG 1 cut(s) 1024
BplI GAGNNNNNCTC 2 cut(s) 339, 371
BpmI CTGGAG 2 cut(s) 162, 463
Bpu1102I GCTNAGC 1 cut(s) 717
BpuMI CCSGG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 185
BsaBI GATNNNNATC 4 cut(s) 96, 253, 444, 1002
BsaJI CCNNGG 1 cut(s) 457
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 134, 374
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 6 cut(s) 47, 341, 712, 817, 1019, 1086
Bse8I GATNNNNATC 4 cut(s) 96, 253, 444, 1002
BseAI TCCGGA 1 cut(s) 131
BseBI CCWGG 2 cut(s) 141, 180
BseCI ATCGAT 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 1 cut(s) 11
BseJI GATNNNNATC 4 cut(s) 96, 253, 444, 1002
BseLI CCNNNNNNNGG 3 cut(s) 131, 134, 374
BseMII CTCAG 3 cut(s) 370, 708, 935
BseNI ACTGG 6 cut(s) 47, 341, 712, 817, 1019, 1086
BseRI GAGGAG 5 cut(s) 360, 363, 531, 534, 882
BseXI GCAGC 8 cut(s) 58, 173, 232, 313, 368, 446, 491, 775
Bsh1236I CGCG 1 cut(s) 307
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 2 cut(s) 209, 531
BshVI ATCGAT 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 479
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 4 cut(s) 21, 132, 368, 600
BslI CCNNNNNNNGG 3 cut(s) 131, 134, 374
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 2 cut(s) 209, 531
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 479
Bsp13I TCCGGA 1 cut(s) 131
Bsp143I GATC 8 cut(s) 31, 91, 182, 193, 439, 728, 997, 1060
Bsp1720I GCTNAGC 1 cut(s) 717
BspACI CCGC 4 cut(s) 218, 305, 462, 603
BspANI GGCC 2 cut(s) 209, 531
BspCNI CTCAG 3 cut(s) 369, 709, 934
BspDI ATCGAT 1 cut(s) 185
BspEI TCCGGA 1 cut(s) 131
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 33, 540, 792
BspMAI CTGCAG 2 cut(s) 386, 509
BspPI GGATC 4 cut(s) 26, 39, 99, 190
BspTI CTTAAG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 6 cut(s) 47, 341, 712, 817, 1019, 1086
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 8 cut(s) 31, 91, 182, 193, 439, 728, 997, 1060
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 2 cut(s) 141, 180
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 859
BstAFI CTTAAG 1 cut(s) 607
BstC8I GCNNGC 2 cut(s) 166, 856
BstDEI CTNAG 6 cut(s) 356, 526, 584, 717, 888, 921
BstENI CCTNNNNNAGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 11
BstFNI CGCG 1 cut(s) 307
BstH2I RGCGCY 3 cut(s) 334, 356, 457
BstHHI GCGC 5 cut(s) 161, 309, 333, 355, 456
BstKTI GATC 8 cut(s) 34, 94, 185, 196, 442, 731, 1000, 1063
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 8 cut(s) 31, 91, 182, 193, 439, 728, 997, 1060
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 6 cut(s) 52, 165, 206, 249, 315, 434
BstNI CCWGG 2 cut(s) 141, 180
BstSCI CCNGG 3 cut(s) 19, 139, 178
BstSFI CTRYAG 2 cut(s) 382, 505
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 8 cut(s) 58, 173, 232, 313, 368, 446, 491, 775
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 42
BstYI RGATCY 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 185
BsuRI GGCC 2 cut(s) 209, 531
BsuTUI ATCGAT 1 cut(s) 185
BtsCI GGATG 1 cut(s) 11
Cac8I GCNNGC 2 cut(s) 166, 856
CfoI GCGC 5 cut(s) 161, 309, 333, 355, 456
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 137, 339
ClaI ATCGAT 1 cut(s) 185
CseI GACGC 2 cut(s) 307, 411
Csp6I GTAC 2 cut(s) 510, 1023
CviQI GTAC 2 cut(s) 510, 1023
DdeI CTNAG 6 cut(s) 356, 526, 584, 717, 888, 921
DpnI GATC 8 cut(s) 33, 93, 184, 195, 441, 730, 999, 1062
DpnII GATC 8 cut(s) 31, 91, 182, 193, 439, 728, 997, 1060
Eam1104I CTCTTC 1 cut(s) 859
EarI CTCTTC 1 cut(s) 859
EciI GGCGGA 1 cut(s) 477
Ecl136II GAGCTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 479
Eco47I GGWCC 2 cut(s) 137, 339
Eco47III AGCGCT 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 722
Eco88I CYCGRG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 477
EcoNI CCTNNNNNAGG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 644
EcoRII CCWGG 2 cut(s) 139, 178
EcoT14I CCWWGG 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 479
ErhI CCWWGG 1 cut(s) 457
FaiI YATR 7 cut(s) 594, 651, 807, 814, 861, 965, 1099
FbaI TGATCA 1 cut(s) 997
FriOI GRGCYC 1 cut(s) 479
FspBI CTAG 1 cut(s) 513
GlaI GCGC 5 cut(s) 160, 308, 332, 354, 455
GsuI CTGGAG 2 cut(s) 162, 463
HaeII RGCGCY 3 cut(s) 334, 356, 457
HaeIII GGCC 2 cut(s) 209, 531
HapII CCGG 4 cut(s) 21, 132, 368, 600
HgaI GACGC 2 cut(s) 307, 411
HhaI GCGC 5 cut(s) 161, 309, 333, 355, 456
Hin6I GCGC 5 cut(s) 159, 307, 331, 353, 454
HinP1I GCGC 5 cut(s) 159, 307, 331, 353, 454
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HinfI GANTC 4 cut(s) 97, 254, 622, 902
HpaII CCGG 4 cut(s) 21, 132, 368, 600
HphI GGTGA 1 cut(s) 408
Hpy166II GTNNAC 1 cut(s) 705
Hpy188I TCNGA 4 cut(s) 96, 193, 359, 657
Hpy188III TCNNGA 4 cut(s) 29, 132, 845, 969
Hpy8I GTNNAC 1 cut(s) 705
Hpy99I CGWCG 1 cut(s) 427
HpyAV CCTTC 4 cut(s) 138, 381, 642, 818
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 3 cut(s) 318, 384, 507
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 165, 206, 249, 315, 434
HpyF3I CTNAG 6 cut(s) 356, 526, 584, 717, 888, 921
HspAI GCGC 5 cut(s) 159, 307, 331, 353, 454
Kpn2I TCCGGA 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 997
Kzo9I GATC 8 cut(s) 31, 91, 182, 193, 439, 728, 997, 1060
LmnI GCTCC 8 cut(s) 350, 399, 464, 482, 544, 790, 869, 885
Lsp1109I GCAGC 8 cut(s) 58, 173, 232, 313, 368, 446, 491, 775
LweI GCATC 4 cut(s) 136, 239, 437, 751
MaeI CTAG 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 152
MalI GATC 8 cut(s) 33, 93, 184, 195, 441, 730, 999, 1062
MboI GATC 8 cut(s) 31, 91, 182, 193, 439, 728, 997, 1060
MboII GAAGA 5 cut(s) 98, 101, 876, 956, 1071
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 5 cut(s) 286, 644, 767, 784, 973
MmeI TCCRAC 2 cut(s) 516, 522
MroI TCCGGA 1 cut(s) 131
MseI TTAA 3 cut(s) 608, 783, 1044
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 504
MspCI CTTAAG 1 cut(s) 607
MspI CCGG 4 cut(s) 21, 132, 368, 600
MspR9I CCNGG 3 cut(s) 21, 141, 180
MvaI CCWGG 2 cut(s) 141, 180
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 6 cut(s) 52, 165, 206, 249, 315, 434
NciI CCSGG 1 cut(s) 21
NdeII GATC 8 cut(s) 31, 91, 182, 193, 439, 728, 997, 1060
NlaIV GGNNCC 3 cut(s) 33, 540, 792
PfeI GAWTC 4 cut(s) 97, 254, 622, 902
PpuMI RGGWCCY 1 cut(s) 137
PshBI ATTAAT 1 cut(s) 1044
PsiI TTATAA 1 cut(s) 1099
Psp124BI GAGCTC 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 139, 178
PspGI CCWGG 2 cut(s) 139, 178
PspN4I GGNNCC 3 cut(s) 33, 540, 792
PspPI GGNCC 2 cut(s) 137, 339
PspPPI RGGWCCY 1 cut(s) 137
PstI CTGCAG 2 cut(s) 386, 509
PsuI RGATCY 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 504
RsaI GTAC 2 cut(s) 511, 1024
RsaNI GTAC 2 cut(s) 510, 1023
RseI CAYNNNNRTG 1 cut(s) 585
SacI GAGCTC 1 cut(s) 479
SaqAI TTAA 3 cut(s) 608, 783, 1044
Sau3AI GATC 8 cut(s) 31, 91, 182, 193, 439, 728, 997, 1060
Sau96I GGNCC 2 cut(s) 137, 339
ScaI AGTACT 2 cut(s) 511, 1024
ScrFI CCNGG 3 cut(s) 21, 141, 180
SduI GDGCHC 1 cut(s) 479
SfaNI GCATC 4 cut(s) 136, 239, 437, 751
SfcI CTRYAG 2 cut(s) 382, 505
SinI GGWCC 2 cut(s) 137, 339
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 5 cut(s) 286, 644, 767, 784, 973
SsiI CCGC 4 cut(s) 218, 305, 462, 603
SspI AATATT 1 cut(s) 661
SspMI CTAG 1 cut(s) 513
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 3 cut(s) 19, 139, 178
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 3 cut(s) 185, 247, 473
TasI AATT 5 cut(s) 286, 644, 767, 784, 973
TatI WGTACW 2 cut(s) 509, 1022
TauI GCSGC 3 cut(s) 220, 307, 606
TfiI GAWTC 4 cut(s) 97, 254, 622, 902
Tru1I TTAA 3 cut(s) 608, 783, 1044
Tru9I TTAA 3 cut(s) 608, 783, 1044
TseI GCWGC 8 cut(s) 46, 161, 220, 301, 381, 434, 504, 763
TspGWI ACGGA 1 cut(s) 104
Vha464I CTTAAG 1 cut(s) 607
VpaK11BI GGWCC 2 cut(s) 137, 339
VspI ATTAAT 1 cut(s) 1044
XagI CCTNNNNNAGG 1 cut(s) 132
XapI RAATTY 2 cut(s) 644, 973
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XspI CTAG 1 cut(s) 513
ZrmI AGTACT 2 cut(s) 511, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.