MD00G1177100.v1.1

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0007025
Physical Location & Seq
Forward (+)
41133295 .. 41133738
444 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1177100.v1.1.491

Sequence Viewer

Length: 444 bp
ATGATAGGGTTGAATAATTTTGGGGGTATTAATCAACCCGGTGATGTTGAATTCCAACACCATCAGTACGGTTCGGATCGGTTGAGTGCCAGGCCAAATATTTTAGGCATGAATAATATGAGTATTTCTGAGCATTGGAGATCATCACTACTTCAGCAACAATTTCCTAATTTCTTGGCTAATTTGGAACCACCACCTAGTACTACTCATGGGATGTACCAATTGCCGTTAGATCATTCGGCGGGTAACAGAGTTACTACTACTCAGATGGTTAATGTGAAAATGGAACACAGTCATCAAGCACTGAATTTGTCAAGGAATTTTTCGGGAAGTCTGGGAAATGATCACCAATACTGGGGTACTAGTACTGCTGGTACTGGTGGCAGTGTTTGGACTGATCTTTCTGGTTTCACATCTTCTTCTTCTACCACCCATCTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

148

Amino Acids

16.14

Weight (kDa)

6.27

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 242
AclWI GGATC 1 cut(s) 84
AcsI RAATTY 3 cut(s) 50, 307, 319
AcuI CTGAAG 1 cut(s) 137
AfaI GTAC 6 cut(s) 68, 202, 218, 361, 367, 376
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 2 cut(s) 13, 50
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 1 cut(s) 89
AlwI GGATC 1 cut(s) 84
AoxI GGCC 1 cut(s) 92
ApoI RAATTY 3 cut(s) 50, 307, 319
AseI ATTAAT 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 53, 338
BccI CCATC 3 cut(s) 69, 262, 441
BceAI ACGGC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 91
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 39
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 2 cut(s) 198, 363
BmcAI AGTACT 2 cut(s) 202, 367
Bme1390I CCNGG 2 cut(s) 39, 91
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 39, 91
BmrI ACTGGG 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 359, 382
BseBI CCWGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 2 cut(s) 120, 278
BseNI ACTGG 2 cut(s) 359, 382
BshFI GGCC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 355
BsnI GGCC 1 cut(s) 94
Bsp143I GATC 5 cut(s) 76, 140, 232, 343, 397
BspACI CCGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 2 cut(s) 121, 277
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 1 cut(s) 84
BsrI ACTGG 2 cut(s) 359, 382
BssMI GATC 5 cut(s) 76, 140, 232, 343, 397
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 2 cut(s) 71, 293
BstDEI CTNAG 2 cut(s) 129, 264
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 5 cut(s) 79, 143, 235, 346, 400
BstMBI GATC 5 cut(s) 76, 140, 232, 343, 397
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 37, 89
BsuRI GGCC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 2 cut(s) 302, 391
Csp6I GTAC 6 cut(s) 67, 201, 217, 360, 366, 375
CviAII CATG 2 cut(s) 109, 209
CviJI RGCY 2 cut(s) 94, 179
CviKI_1 RGCY 2 cut(s) 94, 179
CviQI GTAC 6 cut(s) 67, 201, 217, 360, 366, 375
DdeI CTNAG 2 cut(s) 129, 264
DpnI GATC 5 cut(s) 78, 142, 234, 345, 399
DpnII GATC 5 cut(s) 76, 140, 232, 343, 397
Eco57I CTGAAG 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 89
FaeI CATG 2 cut(s) 112, 212
FaiI YATR 3 cut(s) 110, 119, 210
FatI CATG 2 cut(s) 108, 208
FauI CCCGC 1 cut(s) 235
FbaI TGATCA 1 cut(s) 343
FokI GGATG 1 cut(s) 226
FspBI CTAG 2 cut(s) 198, 363
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 39
Hin1II CATG 2 cut(s) 112, 212
HpaII CCGG 1 cut(s) 39
HphI GGTGA 2 cut(s) 53, 338
Hpy188I TCNGA 3 cut(s) 76, 130, 267
Hpy188III TCNNGA 1 cut(s) 327
HpyCH4III ACNGT 2 cut(s) 71, 293
HpyF3I CTNAG 2 cut(s) 129, 264
Hsp92II CATG 2 cut(s) 112, 212
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 5 cut(s) 76, 140, 232, 343, 397
LpnPI CCDG 8 cut(s) 52, 76, 103, 320, 340, 357, 363, 390
MaeI CTAG 2 cut(s) 198, 363
MaeIII GTNAC 2 cut(s) 245, 253
MalI GATC 5 cut(s) 78, 142, 234, 345, 399
MboI GATC 5 cut(s) 76, 140, 232, 343, 397
MboII GAAGA 3 cut(s) 408, 411, 414
MfeI CAATTG 1 cut(s) 221
MluCI AATT 8 cut(s) 16, 50, 161, 169, 181, 221, 307, 319
MmeI TCCRAC 1 cut(s) 79
MseI TTAA 2 cut(s) 30, 273
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 2 cut(s) 39, 91
MunI CAATTG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 91
NciI CCSGG 1 cut(s) 39
NdeII GATC 5 cut(s) 76, 140, 232, 343, 397
NlaIII CATG 2 cut(s) 112, 212
NlaIV GGNNCC 1 cut(s) 189
PshBI ATTAAT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 189
RsaI GTAC 6 cut(s) 68, 202, 218, 361, 367, 376
RsaNI GTAC 6 cut(s) 67, 201, 217, 360, 366, 375
SaqAI TTAA 2 cut(s) 30, 273
Sau3AI GATC 5 cut(s) 76, 140, 232, 343, 397
ScaI AGTACT 2 cut(s) 202, 367
ScrFI CCNGG 2 cut(s) 39, 91
SetI ASST 1 cut(s) 199
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 8 cut(s) 16, 50, 161, 169, 181, 221, 307, 319
SsiI CCGC 1 cut(s) 242
SspI AATATT 1 cut(s) 100
SspMI CTAG 2 cut(s) 198, 363
StyD4I CCNGG 2 cut(s) 37, 89
TaaI ACNGT 2 cut(s) 71, 293
TasI AATT 8 cut(s) 16, 50, 161, 169, 181, 221, 307, 319
TatI WGTACW 2 cut(s) 200, 365
Tru1I TTAA 2 cut(s) 30, 273
Tru9I TTAA 2 cut(s) 30, 273
TscAI CASTG 2 cut(s) 309, 391
TspDTI ATGAA 1 cut(s) 125
TspRI CASTG 2 cut(s) 309, 391
VspI ATTAAT 1 cut(s) 30
XapI RAATTY 3 cut(s) 50, 307, 319
XspI CTAG 2 cut(s) 198, 363
ZrmI AGTACT 2 cut(s) 202, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.