Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004617

Physical Location & Seq

Genomic Coordinates Forward (+)

20639647 .. 20642659

Gene Structure 3013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGTGATGCAGACGGAAGCTAGGGTTGGTGTGAGCTCAGGACATGGCGTAGCTTCGTCTTCTCATCGTTTAACGCAGGACCAGAGATCACATATCGAATCGGCGTCGCAGCTCTTAGCCGGAGGACTCGCTGGTGCTTTTAGCAAGACTTGTACTGCTCCTCTATCTCGTCTCACCATTCTCTTCCAGGTGCAAGGTATGCACACAAATGCTGCAGCTTTAAGAAAGCCAAGCATATTACACGAGGCTTCACGGATATTGAATGAAGAAGGATTGAAAGCTTTTTGGAAAGGGAATCTAGTTACTATTGCTCACCGGCTTCCATATTCTTCTGTTAATTTCTACGCATATGAACACTACAAGAAGTTCATGTATATGGTTACTGGGATGGAAAATCACAAGGAGGGTATAAGTTCAAACCTTTTTGTACATTTTGTAGCCGGTGGTTTGGCTGGAATCACAGCTGCTTCTGCCACTTATCCACTTGATCTTGTTAGAACTCGTCTTGCTGCTCAGACAAAAGTAATCTACTACTCGGGTATCTGGCATACTCTGCGCTCTATTACAACCGATGAAGGTATCTTGGGCCTCTACAAGGGACTAGGAACAACGCTTGTGGGTGTTGGGCCTAGTATTGCCATTAGCTTTTCTGTGTATGAATCATTGAGATCTTATTGGAGGTCAACTAGGCCCCATGATTCCCCTATCATGGTCAGTCTAGCTTGTGGAAGTCTTTCAGGAATAGCATCTTCAACAGCTACGTTTCCATTGGATCTGGTGAGAAGAAGGAAGCAGCTGGAAGGAATAGGCGGGCGAGCGGTAGTGTACAAGACAGGTTTGTTAGGCACATTAAAGCGTATTGTTCAAACGGAAGGAGCGAGAGGCCTGTACAGAGGAATTCTTCCAGAGTACTACAAAGTGGTACCTGGTGTAGGGATTTGCTTCATGACCTACGAGACACTCAAGCTTTACTTCAAGGATCTTTCTTCGAATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

332

Amino Acids

36.24

Weight (kDa)

9.74

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	32 - 125	8.2e-22	Mitochondrial carrier protein
Mito_carr	PF00153	140 - 227	2.2e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55640 AT3G55640 AT3G55640 AT3G55640
fragaria_vesca	FvH4_7g23560 FvH4_7g23560 FvH4_7g23560 FvH4_7g23560
malus_domestica	MD01G1141400.v1.1 MD07G1205500.v1.1
prunus_persica	Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1
pyrus_communis	pycom01g16170 pycom07g19210
rosa_chinensis	RchiOBHm_Chr1g0368721
rosa_laevigata	RLG00000027194
rosa_multiflora	Rmu_sc0001791.1_g000016
rosa_roxburghii	Rroxscaffold_4G00288330
rosa_rugosa	Rorug01G0344200 Rorug01G0344200 Rorug01G0344200 Rorug01G0344300 Rorug01G0344400
rosa_samantha	Rh1AG351500 Rh1BG315200 Rh1DG346700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	922
AccB1I	GGYRCC	1 cut(s)	922
AccBSI	CCGCTC	1 cut(s)	818
AciI	CCGC	2 cut(s)	810, 818
AclWI	GGATC	2 cut(s)	780, 987
AcsI	RAATTY	1 cut(s)	897
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	6 cut(s)	154, 429, 827, 890, 911, 924
AfiI	CCNNNNNNNGG	3 cut(s)	595, 709, 932
AgsI	TTSAA	6 cut(s)	262, 277, 417, 753, 866, 976
AjnI	CCWGG	2 cut(s)	186, 925
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	176, 950
AlwI	GGATC	2 cut(s)	780, 987
Ama87I	CYCGRG	1 cut(s)	535
AoxI	GGCC	4 cut(s)	586, 626, 689, 883
ApeKI	GCWGC	6 cut(s)	109, 212, 215, 464, 509, 793
ApoI	RAATTY	1 cut(s)	897
Asp700I	GAANNNNTTC	1 cut(s)	733
Asp718I	GGTACC	1 cut(s)	922
AspLEI	GCGC	1 cut(s)	558
AspS9I	GGNCC	4 cut(s)	79, 586, 626, 690
AsuHPI	GGTGA	4 cut(s)	16, 166, 305, 790
AsuII	TTCGAA	1 cut(s)	989
AvaI	CYCGRG	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	79
BaeI	ACNNNNGTAYC	2 cut(s)	523, 556
BanI	GGYRCC	1 cut(s)	922
BanII	GRGCYC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	6 cut(s)	121, 199, 227, 451, 496, 805
BccI	CCATC	1 cut(s)	382
BciT130I	CCWGG	2 cut(s)	188, 927
BcoDI	GTCTC	2 cut(s)	176, 950
BfaI	CTAG	6 cut(s)	21, 299, 602, 630, 687, 719
BfmI	CTRYAG	1 cut(s)	213
BglII	AGATCT	1 cut(s)	668
BisI	GCNGC	6 cut(s)	110, 213, 216, 465, 510, 794
BlsI	GCNGC	6 cut(s)	111, 214, 217, 466, 511, 795
BmcAI	AGTACT	1 cut(s)	911
Bme1390I	CCNGG	2 cut(s)	188, 927
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	535
BmgT120I	GGNCC	4 cut(s)	79, 586, 626, 690
BmiI	GGNNCC	2 cut(s)	692, 924
BmrFI	CCNGG	2 cut(s)	188, 927
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	755
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	989
BpuEI	CTTGAG	1 cut(s)	947
BsaHI	GRCGYC	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	3 cut(s)	595, 709, 932
Bse118I	RCCGGY	2 cut(s)	315, 440
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	188, 927
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	3 cut(s)	595, 709, 932
BseMII	CTCAG	2 cut(s)	51, 527
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	6 cut(s)	121, 199, 227, 451, 496, 805
BshFI	GGCC	4 cut(s)	588, 628, 691, 885
BshNI	GGYRCC	1 cut(s)	922
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	535
BsiSI	CCGG	3 cut(s)	120, 316, 441
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	3 cut(s)	595, 709, 932
BsmAI	GTCTC	2 cut(s)	176, 950
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	612
BsnI	GGCC	4 cut(s)	588, 628, 691, 885
BsoBI	CYCGRG	1 cut(s)	535
Bsp119I	TTCGAA	1 cut(s)	989
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp1407I	TGTACA	3 cut(s)	427, 825, 888
Bsp143I	GATC	5 cut(s)	86, 487, 668, 772, 979
BspACI	CCGC	2 cut(s)	810, 818
BspANI	GGCC	4 cut(s)	588, 628, 691, 885
BspCNI	CTCAG	2 cut(s)	50, 526
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	2 cut(s)	692, 924
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	2 cut(s)	780, 987
BspT104I	TTCGAA	1 cut(s)	989
BspT107I	GGYRCC	1 cut(s)	922
BsrBI	CCGCTC	1 cut(s)	818
BsrFI	RCCGGY	2 cut(s)	315, 440
BsrGI	TGTACA	3 cut(s)	427, 825, 888
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	2 cut(s)	315, 440
BssMI	GATC	5 cut(s)	86, 487, 668, 772, 979
BssNI	GRCGYC	1 cut(s)	104
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	2 cut(s)	188, 927
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	104
BstAPI	GCANNNNNTGC	2 cut(s)	199, 553
BstAUI	TGTACA	3 cut(s)	427, 825, 888
BstBI	TTCGAA	1 cut(s)	989
BstC8I	GCNNGC	2 cut(s)	812, 816
BstDEI	CTNAG	3 cut(s)	37, 115, 513
BstENI	CCTNNNNNAGG	2 cut(s)	593, 930
BstF5I	GGATG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	558
BstKTI	GATC	5 cut(s)	89, 490, 671, 775, 982
BstMAI	GTCTC	2 cut(s)	176, 950
BstMBI	GATC	5 cut(s)	86, 487, 668, 772, 979
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 470, 553
BstNI	CCWGG	2 cut(s)	188, 927
BstSCI	CCNGG	2 cut(s)	186, 925
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	6 cut(s)	121, 199, 227, 451, 496, 805
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	3 cut(s)	668, 772, 979
BstYI	RGATCY	3 cut(s)	668, 772, 979
BsuRI	GGCC	4 cut(s)	588, 628, 691, 885
BtsCI	GGATG	1 cut(s)	393
Cac8I	GCNNGC	2 cut(s)	812, 816
CciI	TCATGA	1 cut(s)	945
CfoI	GCGC	1 cut(s)	558
Cfr10I	RCCGGY	2 cut(s)	315, 440
Cfr13I	GGNCC	4 cut(s)	79, 586, 626, 690
CseI	GACGC	1 cut(s)	93
CsiI	ACCWGGT	1 cut(s)	925
Csp6I	GTAC	6 cut(s)	153, 428, 826, 889, 910, 923
CspCI	CAANNNNNGTGG	2 cut(s)	597, 632
CviAII	CATG	5 cut(s)	44, 370, 695, 709, 946
CviQI	GTAC	6 cut(s)	153, 428, 826, 889, 910, 923
DdeI	CTNAG	3 cut(s)	37, 115, 513
DpnI	GATC	5 cut(s)	88, 489, 670, 774, 981
DpnII	GATC	5 cut(s)	86, 487, 668, 772, 979
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	885
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	36
EcoNI	CCTNNNNNAGG	2 cut(s)	593, 930
EcoO109I	RGGNCCY	1 cut(s)	690
EcoRI	GAATTC	1 cut(s)	897
EcoRII	CCWGG	2 cut(s)	186, 925
EcoT38I	GRGCYC	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	5 cut(s)	47, 373, 698, 712, 949
FalI	AAGNNNNNCTT	2 cut(s)	956, 988
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	5 cut(s)	43, 369, 694, 708, 945
FauI	CCCGC	1 cut(s)	803
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	6 cut(s)	110, 213, 216, 465, 510, 794
FokI	GGATG	1 cut(s)	400
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	6 cut(s)	110, 213, 216, 465, 510, 794
FspBI	CTAG	6 cut(s)	21, 299, 602, 630, 687, 719
GlaI	GCGC	1 cut(s)	557
GluI	GCNGC	6 cut(s)	110, 213, 216, 465, 510, 794
HaeIII	GGCC	4 cut(s)	588, 628, 691, 885
HapII	CCGG	3 cut(s)	120, 316, 441
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	558
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	5 cut(s)	47, 373, 698, 712, 949
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HindIII	AAGCTT	2 cut(s)	279, 965
HinfI	GANTC	7 cut(s)	98, 126, 295, 456, 659, 698, 991
HpaII	CCGG	3 cut(s)	120, 316, 441
HphI	GGTGA	4 cut(s)	16, 166, 305, 790
Hpy166II	GTNNAC	2 cut(s)	684, 826
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	4 cut(s)	39, 738, 905, 946
Hpy8I	GTNNAC	2 cut(s)	684, 826
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	5 cut(s)	263, 569, 780, 794, 866
HpyCH4IV	ACGT	1 cut(s)	761
HpyCH4V	TGCA	4 cut(s)	10, 193, 202, 215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 470, 553
HpyF3I	CTNAG	3 cut(s)	37, 115, 513
HpySE526I	ACGT	1 cut(s)	761
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	5 cut(s)	47, 373, 698, 712, 949
HspAI	GCGC	1 cut(s)	556
KpnI	GGTACC	1 cut(s)	926
Kzo9I	GATC	5 cut(s)	86, 487, 668, 772, 979
LmnI	GCTCC	2 cut(s)	163, 875
Lsp1109I	GCAGC	6 cut(s)	121, 199, 227, 451, 496, 805
LweI	GCATC	1 cut(s)	755
MabI	ACCWGGT	1 cut(s)	925
MaeI	CTAG	6 cut(s)	21, 299, 602, 630, 687, 719
MaeII	ACGT	1 cut(s)	761
MaeIII	GTNAC	2 cut(s)	301, 379
MalI	GATC	5 cut(s)	88, 489, 670, 774, 981
MbiI	CCGCTC	1 cut(s)	818
MboI	GATC	5 cut(s)	86, 487, 668, 772, 979
MboII	GAAGA	8 cut(s)	51, 175, 278, 321, 741, 795, 893, 978
MflI	RGATCY	3 cut(s)	668, 772, 979
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	337, 897
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	8 cut(s)	116, 171, 238, 397, 599, 672, 875, 887
MroXI	GAANNNNTTC	1 cut(s)	733
MseI	TTAA	4 cut(s)	71, 221, 336, 851
MslI	CAYNNNNRTG	2 cut(s)	207, 374
MspA1I	CMGCKG	2 cut(s)	464, 796
MspI	CCGG	3 cut(s)	120, 316, 441
MspR9I	CCNGG	2 cut(s)	188, 927
MvaI	CCWGG	2 cut(s)	188, 927
MwoI	GCNNNNNNNGC	3 cut(s)	199, 470, 553
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	5 cut(s)	86, 487, 668, 772, 979
NlaIII	CATG	5 cut(s)	47, 373, 698, 712, 949
NlaIV	GGNNCC	2 cut(s)	692, 924
NspV	TTCGAA	1 cut(s)	989
PagI	TCATGA	1 cut(s)	945
PceI	AGGCCT	1 cut(s)	885
PcsI	WCGNNNNNNNCGW	1 cut(s)	875
PdmI	GAANNNNTTC	1 cut(s)	733
PfeI	GAWTC	6 cut(s)	98, 295, 456, 659, 698, 991
PkrI	GCNGC	6 cut(s)	111, 214, 217, 466, 511, 795
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	186, 925
PspGI	CCWGG	2 cut(s)	186, 925
PspN4I	GGNNCC	2 cut(s)	692, 924
PspPI	GGNCC	4 cut(s)	79, 586, 626, 690
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	3 cut(s)	668, 772, 979
PvuII	CAGCTG	2 cut(s)	464, 796
RsaI	GTAC	6 cut(s)	154, 429, 827, 890, 911, 924
RsaNI	GTAC	6 cut(s)	153, 428, 826, 889, 910, 923
RseI	CAYNNNNRTG	2 cut(s)	207, 374
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	4 cut(s)	71, 221, 336, 851
SatI	GCNGC	6 cut(s)	110, 213, 216, 465, 510, 794
Sau3AI	GATC	5 cut(s)	86, 487, 668, 772, 979
Sau96I	GGNCC	4 cut(s)	79, 586, 626, 690
ScaI	AGTACT	1 cut(s)	911
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	188, 927
SduI	GDGCHC	1 cut(s)	38
SexAI	ACCWGGT	1 cut(s)	925
SfaNI	GCATC	1 cut(s)	755
SfcI	CTRYAG	1 cut(s)	213
SfuI	TTCGAA	1 cut(s)	989
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	207, 374
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse9I	AATT	2 cut(s)	337, 897
SseBI	AGGCCT	1 cut(s)	885
SsiI	CCGC	2 cut(s)	810, 818
SspMI	CTAG	6 cut(s)	21, 299, 602, 630, 687, 719
SstI	GAGCTC	1 cut(s)	38
StuI	AGGCCT	1 cut(s)	885
StyD4I	CCNGG	2 cut(s)	186, 925
TaiI	ACGT	1 cut(s)	764
TaqI	TCGA	2 cut(s)	96, 989
TasI	AATT	2 cut(s)	337, 897
TatI	WGTACW	5 cut(s)	152, 427, 825, 888, 909
TfiI	GAWTC	6 cut(s)	98, 295, 456, 659, 698, 991
Tru1I	TTAA	4 cut(s)	71, 221, 336, 851
Tru9I	TTAA	4 cut(s)	71, 221, 336, 851
TseI	GCWGC	6 cut(s)	109, 212, 215, 464, 509, 793
TspDTI	ATGAA	6 cut(s)	279, 358, 366, 588, 672, 934
TspGWI	ACGGA	3 cut(s)	29, 268, 884
VpaK11BI	GGWCC	1 cut(s)	79
XagI	CCTNNNNNAGG	2 cut(s)	593, 930
XapI	RAATTY	1 cut(s)	897
XmnI	GAANNNNTTC	1 cut(s)	733
XspI	CTAG	6 cut(s)	21, 299, 602, 630, 687, 719
ZrmI	AGTACT	1 cut(s)	911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.