Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001791.1

Orthogroup ID

OG0004617

Physical Location & Seq

Genomic Coordinates Reverse (-)

95187 .. 98363

Gene Structure 3177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001791.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgcactcggatgttgcaactatgaggaaagctagcatatggcgtgaggcctcaagaattgctggtgaagagggatttagagctttctggaaaggaaatctggttacgattgctcatcgtcttccatattcttctgtcaatttctattcatatgagcagtataaaaagattctgcatacagttccgggactggaaaattccagggataacatgagtatagacatttgtgtacattttgtgggtggaggtttggcaggaataacagctgcaacagccacatatcctttggatcttgtaaggacacgccttgcagctcagacaaatgtaatgtactacagaggcattgggcatgctttgcgaactattagcagggatgagggtatcttcggtctctataaaggacttggggcaaccctcttgggtgttgggcccagtatagctatcagttttacagtatatgagacattaagatcttattggcaggcaaacaggcctgatgattctactgtgctggttagtcttgcttgtgggagcctttcaggaattgcatcatcaacagcaacatttccattggatctcgtgaggcggcgcaaacagttggaaggggctggtggccgagcgcgtgtctacacaacaggtctttttggtacatttaagcacatattcaggacagaaggcttgcgcggcttgtatagaggaattctaccggaatactacaaagtggtacctggtgtcggcatttgttttatgacatacgagacactgaagatgcttcttgcagatgttagtgctactatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

266

Amino Acids

29.3

Weight (kDa)

9.57

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55640 AT3G55640 AT3G55640 AT3G55640
fragaria_vesca	FvH4_7g23560 FvH4_7g23560 FvH4_7g23560 FvH4_7g23560
malus_domestica	MD01G1141400.v1.1 MD07G1205500.v1.1
prunus_persica	Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1
pyrus_communis	pycom01g16170 pycom07g19210
rosa_chinensis	RchiOBHm_Chr1g0368721
rosa_laevigata	RLG00000027194
rosa_multiflora	Rmu_sc0001791.1_g000016
rosa_roxburghii	Rroxscaffold_4G00288330
rosa_rugosa	Rorug01G0344200 Rorug01G0344200 Rorug01G0344200 Rorug01G0344300 Rorug01G0344400
rosa_samantha	Rh1AG351500 Rh1BG315200 Rh1DG346700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	724
AccB1I	GGYRCC	1 cut(s)	724
AccI	GTMKAC	1 cut(s)	627
AccII	CGCG	2 cut(s)	622, 684
AciI	CCGC	2 cut(s)	586, 684
AclWI	GGATC	2 cut(s)	297, 582
AcoI	YGGCCR	1 cut(s)	613
AcsI	RAATTY	2 cut(s)	196, 699
AcuI	CTGAAG	1 cut(s)	785
AfaI	GTAC	4 cut(s)	231, 332, 649, 726
AfiI	CCNNNNNNNGG	1 cut(s)	734
AjnI	CCWGG	2 cut(s)	200, 727
AluBI	AGCT	5 cut(s)	32, 83, 266, 314, 440
AluI	AGCT	5 cut(s)	32, 83, 266, 314, 440
Alw26I	GTCTC	3 cut(s)	395, 455, 752
AlwI	GGATC	2 cut(s)	297, 582
AoxI	GGCC	4 cut(s)	48, 428, 491, 613
ApaI	GGGCCC	1 cut(s)	432
ApeKI	GCWGC	2 cut(s)	266, 311
ApoI	RAATTY	2 cut(s)	196, 699
Asp718I	GGTACC	1 cut(s)	724
AspLEI	GCGC	3 cut(s)	591, 622, 684
AspS9I	GGNCC	2 cut(s)	428, 429
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	77
AsuNHI	GCTAGC	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	724
BanII	GRGCYC	1 cut(s)	432
BauI	CACGAG	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	253, 323
BciT130I	CCWGG	2 cut(s)	202, 729
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	3 cut(s)	395, 455, 752
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	334
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	4 cut(s)	267, 312, 587, 685
BlsI	GCNGC	4 cut(s)	268, 313, 588, 686
Bme1390I	CCNGG	3 cut(s)	186, 202, 729
BmgT120I	GGNCC	2 cut(s)	428, 429
BmiI	GGNNCC	3 cut(s)	430, 533, 726
BmrFI	CCNGG	3 cut(s)	186, 202, 729
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	2 cut(s)	557, 759
BmtI	GCTAGC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	706
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse1I	ACTGG	2 cut(s)	195, 432
BseBI	CCWGG	2 cut(s)	202, 729
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	16, 379
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	2 cut(s)	195, 432
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	2 cut(s)	253, 323
Bsh1236I	CGCG	2 cut(s)	622, 684
BshFI	GGCC	4 cut(s)	50, 430, 493, 615
BshNI	GGYRCC	1 cut(s)	724
BsiSI	CCGG	2 cut(s)	185, 707
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmAI	GTCTC	3 cut(s)	395, 455, 752
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	4 cut(s)	50, 430, 493, 615
Bso31I	GGTCTC	1 cut(s)	395
Bsp120I	GGGCCC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	289, 470, 574
BspACI	CCGC	2 cut(s)	586, 684
BspANI	GGCC	4 cut(s)	50, 430, 493, 615
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	2 cut(s)	622, 684
BspLI	GGNNCC	3 cut(s)	430, 533, 726
BspOI	GCTAGC	1 cut(s)	36
BspPI	GGATC	2 cut(s)	297, 582
BspT107I	GGYRCC	1 cut(s)	724
BspTNI	GGTCTC	1 cut(s)	395
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	195, 432
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	289, 470, 574
BssSI	CACGAG	1 cut(s)	578
Bst2BI	CACGAG	1 cut(s)	578
Bst2UI	CCWGG	2 cut(s)	202, 729
Bst4CI	ACNGT	4 cut(s)	181, 454, 508, 597
Bst6I	CTCTTC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstAUI	TGTACA	1 cut(s)	229
BstC8I	GCNNGC	4 cut(s)	34, 351, 483, 680
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	16, 379
BstFNI	CGCG	2 cut(s)	622, 684
BstHHI	GCGC	3 cut(s)	591, 622, 684
BstKTI	GATC	3 cut(s)	292, 473, 577
BstMAI	GTCTC	3 cut(s)	395, 455, 752
BstMBI	GATC	3 cut(s)	289, 470, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 355, 684
BstNI	CCWGG	2 cut(s)	202, 729
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	3 cut(s)	184, 200, 727
BstSFI	CTRYAG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	2 cut(s)	622, 684
BstV1I	GCAGC	2 cut(s)	253, 323
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	3 cut(s)	289, 470, 574
BstYI	RGATCY	3 cut(s)	289, 470, 574
BsuRI	GGCC	4 cut(s)	50, 430, 493, 615
BtsCI	GGATG	2 cut(s)	16, 379
BtsIMutI	CAGTG	1 cut(s)	761
Cac8I	GCNNGC	4 cut(s)	34, 351, 483, 680
CfoI	GCGC	3 cut(s)	591, 622, 684
Cfr13I	GGNCC	2 cut(s)	428, 429
CsiI	ACCWGGT	1 cut(s)	727
Csp6I	GTAC	4 cut(s)	230, 331, 648, 725
CviAII	CATG	2 cut(s)	211, 350
CviQI	GTAC	4 cut(s)	230, 331, 648, 725
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	3 cut(s)	291, 472, 576
DpnII	GATC	3 cut(s)	289, 470, 574
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco147I	AGGCCT	2 cut(s)	50, 493
Eco24I	GRGCYC	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	785
EcoRI	GAATTC	1 cut(s)	699
EcoRII	CCWGG	2 cut(s)	200, 727
EcoT38I	GRGCYC	1 cut(s)	432
FaeI	CATG	2 cut(s)	214, 353
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	2 cut(s)	210, 349
FauNDI	CATATG	2 cut(s)	38, 151
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	4 cut(s)	267, 312, 587, 685
FokI	GGATG	2 cut(s)	23, 386
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	4 cut(s)	267, 312, 587, 685
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	3 cut(s)	590, 621, 683
GluI	GCNGC	4 cut(s)	267, 312, 587, 685
HaeIII	GGCC	4 cut(s)	50, 430, 493, 615
HapII	CCGG	2 cut(s)	185, 707
HhaI	GCGC	3 cut(s)	591, 622, 684
Hin1II	CATG	2 cut(s)	214, 353
Hin6I	GCGC	3 cut(s)	589, 620, 682
HinP1I	GCGC	3 cut(s)	589, 620, 682
HinfI	GANTC	2 cut(s)	169, 500
HpaII	CCGG	2 cut(s)	185, 707
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	2 cut(s)	230, 628
Hpy188I	TCNGA	2 cut(s)	10, 318
Hpy188III	TCNNGA	5 cut(s)	54, 88, 540, 580, 667
Hpy8I	GTNNAC	2 cut(s)	230, 628
HpyAV	CCTTC	2 cut(s)	596, 668
HpyCH4III	ACNGT	4 cut(s)	181, 454, 508, 597
HpyCH4V	TGCA	7 cut(s)	4, 17, 175, 269, 311, 548, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 355, 684
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	214, 353
HspAI	GCGC	3 cut(s)	589, 620, 682
KpnI	GGTACC	1 cut(s)	728
Kzo9I	GATC	3 cut(s)	289, 470, 574
LmnI	GCTCC	1 cut(s)	531
Lsp1109I	GCAGC	2 cut(s)	253, 323
LweI	GCATC	2 cut(s)	557, 759
MabI	ACCWGGT	1 cut(s)	727
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	3 cut(s)	291, 472, 576
MboI	GATC	3 cut(s)	289, 470, 574
MboII	GAAGA	5 cut(s)	80, 113, 123, 376, 778
MflI	RGATCY	3 cut(s)	289, 470, 574
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	5 cut(s)	57, 139, 196, 543, 699
MmeI	TCCRAC	1 cut(s)	579
MseI	TTAA	2 cut(s)	467, 654
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	2 cut(s)	185, 707
MspR9I	CCNGG	3 cut(s)	186, 202, 729
MvaI	CCWGG	2 cut(s)	202, 729
MvnI	CGCG	2 cut(s)	622, 684
MwoI	GCNNNNNNNGC	3 cut(s)	272, 355, 684
NciI	CCSGG	1 cut(s)	186
NdeI	CATATG	2 cut(s)	38, 151
NdeII	GATC	3 cut(s)	289, 470, 574
NheI	GCTAGC	1 cut(s)	32
NlaIII	CATG	2 cut(s)	214, 353
NlaIV	GGNNCC	3 cut(s)	430, 533, 726
NmeAIII	GCCGAG	1 cut(s)	641
NspI	RCATGY	1 cut(s)	353
PaeI	GCATGC	1 cut(s)	353
PceI	AGGCCT	2 cut(s)	50, 493
PfeI	GAWTC	2 cut(s)	169, 500
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	4 cut(s)	268, 313, 588, 686
Psp6I	CCWGG	2 cut(s)	200, 727
PspGI	CCWGG	2 cut(s)	200, 727
PspN4I	GGNNCC	3 cut(s)	430, 533, 726
PspOMI	GGGCCC	1 cut(s)	428
PspPI	GGNCC	2 cut(s)	428, 429
PsuI	RGATCY	3 cut(s)	289, 470, 574
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	4 cut(s)	231, 332, 649, 726
RsaNI	GTAC	4 cut(s)	230, 331, 648, 725
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	467, 654
SatI	GCNGC	4 cut(s)	267, 312, 587, 685
Sau3AI	GATC	3 cut(s)	289, 470, 574
Sau96I	GGNCC	2 cut(s)	428, 429
ScrFI	CCNGG	3 cut(s)	186, 202, 729
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	8 cut(s)	34, 85, 250, 268, 316, 442, 640, 730
SexAI	ACCWGGT	1 cut(s)	727
SfaNI	GCATC	2 cut(s)	557, 759
SfcI	CTRYAG	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	5 cut(s)	57, 139, 196, 543, 699
SseBI	AGGCCT	2 cut(s)	50, 493
SsiI	CCGC	2 cut(s)	586, 684
SspMI	CTAG	1 cut(s)	33
StuI	AGGCCT	2 cut(s)	50, 493
StyD4I	CCNGG	3 cut(s)	184, 200, 727
TaaI	ACNGT	4 cut(s)	181, 454, 508, 597
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	5 cut(s)	57, 139, 196, 543, 699
TatI	WGTACW	2 cut(s)	229, 330
TauI	GCSGC	2 cut(s)	589, 687
TfiI	GAWTC	2 cut(s)	169, 500
Tru1I	TTAA	2 cut(s)	467, 654
Tru9I	TTAA	2 cut(s)	467, 654
TscAI	CASTG	1 cut(s)	768
TseI	GCWGC	2 cut(s)	266, 311
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	768
XapI	RAATTY	2 cut(s)	196, 699
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.