Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004617

Physical Location & Seq

Genomic Coordinates Reverse (-)

46216345 .. 46219448

Gene Structure 3104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0344200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCGCCAAGCCAAATAGCAATGGAAGACCAAAAACCACAACGAACCAGAAGCACTAGTAATAATGGTGCCAACAACAACAACAACAACAAAAATTTGAGGGGGCATTTGGAGACGAGCAAAGCAGCGGAGCCGGTGTGGCTTATGAAATGCCCTCCCAACGTCGCCAAATCGTTTAAGCCTGACGCCGCCGACGATGGCTCCGTCGCCGCAGAGGAGCCTTGTTCTTCCGGCCCTGTCGCCAAGGTCATCCTCTCCCTTGACCCTCTCAACTCCAATAACGAACCTAAGTTTACCATGGAACTGGCGGCCACTGAATCTGCAAATACCCCCAAGTGTTACGTTTTGGATATGTCCAGGGACTTCATTCCAATGTCTGTGTTTTCAGAGTCGTCAGAAGGAAAGTTATCTGTGGAGGGGAAAATCTTCAACAAATTTGACATGAAGCCCCATGATGAGAATCTTGAGAATTATGGGAAACTTTGCCGTGAACGAACAAAAAAGCATATGAAAAGTAGAAAGATTCAGGTGATCGACAATGACAATGGGGCACATATGAGGCCTATGCCAGGGATGATTGGTTTTGTGGCTCCTGGACCCAGTGACAAGAAGAAAGCGCCAACTAAGGGATCAGAAATGAAGAGAACAAGGAGGGACCGTGGAGAAATGGAACATATTATGTTTAAGCTCTTTGAAAGGCAACCTAATTGGACTTTAAGACAATTGATCCAAGAGACAGATCAACCCGAACAATTTCTGAAAGACATACTTAAGGACCTCTCTGTTTACAACAACAAGGGAGCTAATCAAGGCACTTACGAGCTGAAACCTGAATACAGGAGAACAGGCCAGGAGCCAGCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

288

Amino Acids

32.48

Weight (kDa)

8.87

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIF_beta	PF02270	217 - 280	3.4e-18	TFIIF, beta subunit HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55640 AT3G55640 AT3G55640 AT3G55640
fragaria_vesca	FvH4_7g23560 FvH4_7g23560 FvH4_7g23560 FvH4_7g23560
malus_domestica	MD01G1141400.v1.1 MD07G1205500.v1.1
prunus_persica	Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1
pyrus_communis	pycom01g16170 pycom07g19210
rosa_chinensis	RchiOBHm_Chr1g0368721
rosa_laevigata	RLG00000027194
rosa_multiflora	Rmu_sc0001791.1_g000016
rosa_roxburghii	Rroxscaffold_4G00288330
rosa_rugosa	Rorug01G0344200 Rorug01G0344200 Rorug01G0344200 Rorug01G0344300 Rorug01G0344400
rosa_samantha	Rh1AG351500 Rh1BG315200 Rh1DG346700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 68
AciI	CCGC	4 cut(s)	128, 189, 210, 308
AclWI	GGATC	2 cut(s)	637, 721
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	2 cut(s)	94, 434
AcyI	GRCGYC	2 cut(s)	5, 186
AfiI	CCNNNNNNNGG	2 cut(s)	569, 626
AflII	CTTAAG	1 cut(s)	770
AgsI	TTSAA	2 cut(s)	430, 695
AhlI	ACTAGT	1 cut(s)	56
AjnI	CCWGG	4 cut(s)	356, 568, 592, 849
AluBI	AGCT	4 cut(s)	688, 803, 823, 860
AluI	AGCT	4 cut(s)	688, 803, 823, 860
Alw26I	GTCTC	2 cut(s)	107, 728
AlwI	GGATC	2 cut(s)	637, 721
AoxI	GGCC	4 cut(s)	232, 309, 560, 847
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	94, 434
Asp700I	GAANNNNTTC	2 cut(s)	425, 753
AspLEI	GCGC	2 cut(s)	7, 619
AspS9I	GGNCC	4 cut(s)	233, 596, 655, 775
AsuHPI	GGTGA	1 cut(s)	541
AvaII	GGWCC	3 cut(s)	596, 655, 775
BaeGI	GKGCMC	1 cut(s)	553
BanI	GGYRCC	2 cut(s)	4, 68
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	4 cut(s)	358, 570, 594, 851
BcoDI	GTCTC	2 cut(s)	107, 728
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	1 cut(s)	57
BfoI	RGCGCY	2 cut(s)	8, 620
BfrI	CTTAAG	1 cut(s)	770
BglI	GCCNNNNNGGC	1 cut(s)	139
BisI	GCNGC	4 cut(s)	126, 189, 210, 309
BlsI	GCNGC	4 cut(s)	127, 190, 211, 310
Bme1390I	CCNGG	4 cut(s)	358, 570, 594, 851
Bme18I	GGWCC	3 cut(s)	596, 655, 775
BmgT120I	GGNCC	4 cut(s)	233, 596, 655, 775
BmiI	GGNNCC	9 cut(s)	6, 70, 132, 202, 219, 591, 598, 656, 855
BmrFI	CCNGG	4 cut(s)	358, 570, 594, 851
BmrI	ACTGGG	1 cut(s)	594
BmuI	ACTGGG	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	459
BsaHI	GRCGYC	2 cut(s)	5, 186
BsaJI	CCNNGG	5 cut(s)	243, 297, 357, 569, 658
BsaXI	ACNNNNNCTCC	6 cut(s)	122, 152, 185, 215, 643, 673
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 626
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	309, 600
Bse3DI	GCAATG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	4 cut(s)	358, 570, 594, 851
BseDI	CCNNGG	5 cut(s)	243, 297, 357, 569, 658
BseGI	GGATG	2 cut(s)	249, 579
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	569, 626
BseMI	GCAATG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	309, 600
BseRI	GAGGAG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	1 cut(s)	137
BshFI	GGCC	4 cut(s)	234, 311, 562, 849
BshNI	GGYRCC	2 cut(s)	4, 68
BsiSI	CCGG	2 cut(s)	134, 231
BslFI	GGGAC	2 cut(s)	374, 668
BslI	CCNNNNNNNGG	2 cut(s)	569, 626
BsmAI	GTCTC	2 cut(s)	107, 728
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	374, 668
BsnI	GGCC	4 cut(s)	234, 311, 562, 849
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	4 cut(s)	531, 629, 726, 739
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	4 cut(s)	128, 189, 210, 308
BspANI	GGCC	4 cut(s)	234, 311, 562, 849
BspLI	GGNNCC	9 cut(s)	6, 70, 132, 202, 219, 591, 598, 656, 855
BspPI	GGATC	2 cut(s)	637, 721
BspT107I	GGYRCC	2 cut(s)	4, 68
BspTI	CTTAAG	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	309, 600
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	5 cut(s)	243, 297, 357, 569, 658
BssMI	GATC	4 cut(s)	531, 629, 726, 739
BssNI	GRCGYC	2 cut(s)	5, 186
BssT1I	CCWWGG	2 cut(s)	243, 297
Bst2UI	CCWGG	4 cut(s)	358, 570, 594, 851
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	1 cut(s)	635
BstACI	GRCGYC	2 cut(s)	5, 186
BstAFI	CTTAAG	1 cut(s)	770
BstC8I	GCNNGC	1 cut(s)	858
BstDEI	CTNAG	2 cut(s)	288, 624
BstDSI	CCRYGG	2 cut(s)	297, 658
BstENI	CCTNNNNNAGG	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	249, 579
BstH2I	RGCGCY	2 cut(s)	8, 620
BstHHI	GCGC	2 cut(s)	7, 619
BstKTI	GATC	4 cut(s)	534, 632, 729, 742
BstMAI	GTCTC	2 cut(s)	107, 728
BstMBI	GATC	4 cut(s)	531, 629, 726, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	4 cut(s)	358, 570, 594, 851
BstSCI	CCNGG	4 cut(s)	356, 568, 592, 849
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	304
BsuRI	GGCC	4 cut(s)	234, 311, 562, 849
BtgI	CCRYGG	2 cut(s)	297, 658
BtsCI	GGATG	2 cut(s)	249, 579
BtsIMutI	CAGTG	2 cut(s)	312, 607
Cac8I	GCNNGC	1 cut(s)	858
CfoI	GCGC	2 cut(s)	7, 619
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	4 cut(s)	233, 596, 655, 775
CseI	GACGC	1 cut(s)	194
CviAII	CATG	3 cut(s)	298, 442, 452
DdeI	CTNAG	2 cut(s)	288, 624
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	533, 631, 728, 741
DpnII	GATC	4 cut(s)	531, 629, 726, 739
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	635
EarI	CTCTTC	1 cut(s)	635
Eco130I	CCWWGG	2 cut(s)	243, 297
Eco147I	AGGCCT	1 cut(s)	562
Eco47I	GGWCC	3 cut(s)	596, 655, 775
EcoNI	CCTNNNNNAGG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	775
EcoRII	CCWGG	4 cut(s)	356, 568, 592, 849
EcoT14I	CCWWGG	2 cut(s)	243, 297
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	243, 297
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	3 cut(s)	301, 445, 455
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	2 cut(s)	374, 668
FatI	CATG	3 cut(s)	297, 441, 451
FauNDI	CATATG	2 cut(s)	507, 555
Fnu4HI	GCNGC	4 cut(s)	126, 189, 210, 309
FokI	GGATG	2 cut(s)	236, 586
Fsp4HI	GCNGC	4 cut(s)	126, 189, 210, 309
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	2 cut(s)	6, 618
GluI	GCNGC	4 cut(s)	126, 189, 210, 309
HaeII	RGCGCY	2 cut(s)	8, 620
HaeIII	GGCC	4 cut(s)	234, 311, 562, 849
HapII	CCGG	2 cut(s)	134, 231
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	2 cut(s)	7, 619
Hin1I	GRCGYC	2 cut(s)	5, 186
Hin1II	CATG	3 cut(s)	301, 445, 455
Hin6I	GCGC	2 cut(s)	5, 617
HinP1I	GCGC	2 cut(s)	5, 617
HinfI	GANTC	4 cut(s)	317, 389, 460, 523
HpaII	CCGG	2 cut(s)	134, 231
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	3 cut(s)	294, 491, 787
Hpy188I	TCNGA	4 cut(s)	388, 397, 634, 759
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	3 cut(s)	294, 491, 787
Hpy99I	CGWCG	3 cut(s)	167, 197, 209
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	2 cut(s)	162, 342
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	2 cut(s)	288, 624
HpySE526I	ACGT	2 cut(s)	162, 342
Hsp92I	GRCGYC	2 cut(s)	5, 186
Hsp92II	CATG	3 cut(s)	301, 445, 455
HspAI	GCGC	2 cut(s)	5, 617
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	531, 629, 726, 739
LmnI	GCTCC	6 cut(s)	130, 206, 217, 595, 800, 853
Lsp1109I	GCAGC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	162, 342
MaeIII	GTNAC	2 cut(s)	338, 602
MalI	GATC	4 cut(s)	533, 631, 728, 741
MboI	GATC	4 cut(s)	531, 629, 726, 739
MboII	GAAGA	5 cut(s)	38, 219, 418, 622, 652
MfeI	CAATTG	1 cut(s)	722
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	6 cut(s)	94, 434, 469, 706, 722, 752
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	9 cut(s)	93, 165, 208, 263, 276, 409, 552, 645, 788
MroXI	GAANNNNTTC	2 cut(s)	425, 753
MseI	TTAA	4 cut(s)	177, 684, 716, 771
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	770
MspI	CCGG	2 cut(s)	134, 231
MspR9I	CCNGG	4 cut(s)	358, 570, 594, 851
MunI	CAATTG	1 cut(s)	722
MvaI	CCWGG	4 cut(s)	358, 570, 594, 851
MwoI	GCNNNNNNNGC	1 cut(s)	139
NarI	GGCGCC	1 cut(s)	5
NcoI	CCATGG	1 cut(s)	297
NdeI	CATATG	2 cut(s)	507, 555
NdeII	GATC	4 cut(s)	531, 629, 726, 739
NlaIII	CATG	3 cut(s)	301, 445, 455
NlaIV	GGNNCC	9 cut(s)	6, 70, 132, 202, 219, 591, 598, 656, 855
NmuCI	GTSAC	1 cut(s)	602
PceI	AGGCCT	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 201
PdmI	GAANNNNTTC	2 cut(s)	425, 753
PfeI	GAWTC	3 cut(s)	317, 460, 523
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	4 cut(s)	127, 190, 211, 310
PleI	GAGTC	1 cut(s)	397
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	397
PpuMI	RGGWCCY	1 cut(s)	775
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	4 cut(s)	356, 568, 592, 849
PspGI	CCWGG	4 cut(s)	356, 568, 592, 849
PspN4I	GGNNCC	9 cut(s)	6, 70, 132, 202, 219, 591, 598, 656, 855
PspPI	GGNCC	4 cut(s)	233, 596, 655, 775
PspPPI	RGGWCCY	1 cut(s)	775
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	4 cut(s)	177, 684, 716, 771
SatI	GCNGC	4 cut(s)	126, 189, 210, 309
Sau3AI	GATC	4 cut(s)	531, 629, 726, 739
Sau96I	GGNCC	4 cut(s)	233, 596, 655, 775
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	4 cut(s)	358, 570, 594, 851
SduI	GDGCHC	1 cut(s)	553
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	3 cut(s)	596, 655, 775
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	464, 770
SmoI	CTYRAG	2 cut(s)	464, 770
SpeI	ACTAGT	1 cut(s)	56
Sse9I	AATT	6 cut(s)	94, 434, 469, 706, 722, 752
SseBI	AGGCCT	1 cut(s)	562
SsiI	CCGC	4 cut(s)	128, 189, 210, 308
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	562
StyD4I	CCNGG	4 cut(s)	356, 568, 592, 849
StyI	CCWWGG	2 cut(s)	243, 297
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	2 cut(s)	165, 345
TaqI	TCGA	1 cut(s)	534
TasI	AATT	6 cut(s)	94, 434, 469, 706, 722, 752
TauI	GCSGC	3 cut(s)	191, 212, 311
TfiI	GAWTC	3 cut(s)	317, 460, 523
Tru1I	TTAA	4 cut(s)	177, 684, 716, 771
Tru9I	TTAA	4 cut(s)	177, 684, 716, 771
TscAI	CASTG	2 cut(s)	319, 607
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	5 cut(s)	161, 355, 458, 524, 653
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	2 cut(s)	319, 607
Vha464I	CTTAAG	1 cut(s)	770
VpaK11BI	GGWCC	3 cut(s)	596, 655, 775
XagI	CCTNNNNNAGG	1 cut(s)	567
XapI	RAATTY	2 cut(s)	94, 434
XmnI	GAANNNNTTC	2 cut(s)	425, 753
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.