Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004617

Physical Location & Seq

Genomic Coordinates Reverse (-)

58717604 .. 58721999

Gene Structure 4396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCAGACGGAGGCCAGAGTTGGGGTGGTGGTGGAAGGAGGAGGAGCTCAGAGAGCTTTACATGCCGGCCATGGAGGCGGCGTTGCCGCAGTCGCGCAGTCACTGCCGCAGCCGCAGCCCAAGTCTCTGCAGCAGTCTCAGATCGGAACACTGTCGCAGCTTCTCGCCGGAGGCGTGGCCGGAGCTCTGGCTAAGACTTGTACTGCGCCTCTTGCTCGGCTTACTATACTCTTTCAGATACAAGGCATGCACTCGGATGTTGCAACTATGAGGAAAGCTAGCATATGGCGTGAGGCCTCAAGAATTGCTGGTGAAGAGGGATTTAGAGCTTTCTGGAAAGGAAATCTGGTTACGATTGCTCATCGTCTTCCATATTCTTCTGTCAATTTCTATTCATATGAGCAGTATAAAAAGATTCTGCATACAGTTCCGGGACTGGAAAATTCCAGGGATAACATGAGTACAGACATTTGTGTACATTTTGTGGGTGGAGGTTTGGCAGGAATAACAGCTGCAACAGCCACATATCCTTTGGATCTTGTAAGGACACGCCTTGCAGCTCAGACAAATGTAATGTACTACAGAGGCATTGGGCATGCTTTGCGAACTATTAGCAGGGATGAGGGTATCTTTGGTCTCTATAAAGGACTTGGAGCAACCCTCTTGGGTGTTGGGCCCAGTATAGCTATCAGTTTTACAGTATATGAGACATTAAGATCTTATTGGCAGGCAAACAGGCCTGATGATTCTACTGTGCTGGTTAGTCTTGCTTGTGGGAGCCTTTCAGGAATTGCATCATCAACAGCAACATTTCCATTGGATCTCGTGAGGCGGCGCAAACAGTTGGAAGGGGCTGGTGGCCGAGCGCGTGTCTACACAACAGGTCTTTTTGGTACATTTAAGCACATATTCAGGACAGAAGGCTTGCGCGGCTTGTATAGAGGAATTCTACCGGAATACTACAAAGTGGTACCTGGTGTCGGCATTTGTTTTATGACATACGAGACACTGAAGATGCTTCTTGCAGATGTTAGTGCTACTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

348

Amino Acids

37.41

Weight (kDa)

9.69

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	48 - 141	7.2e-21	Mitochondrial carrier protein
Mito_carr	PF00153	158 - 243	1.3e-24	Mitochondrial carrier protein
Mito_carr	PF00153	250 - 343	2.8e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55640 AT3G55640 AT3G55640 AT3G55640
fragaria_vesca	FvH4_7g23560 FvH4_7g23560 FvH4_7g23560 FvH4_7g23560
malus_domestica	MD01G1141400.v1.1 MD07G1205500.v1.1
prunus_persica	Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1
pyrus_communis	pycom01g16170 pycom07g19210
rosa_chinensis	RchiOBHm_Chr1g0368721
rosa_laevigata	RLG00000027194
rosa_multiflora	Rmu_sc0001791.1_g000016
rosa_roxburghii	Rroxscaffold_4G00288330
rosa_rugosa	Rorug01G0344200 Rorug01G0344200 Rorug01G0344200 Rorug01G0344300 Rorug01G0344400
rosa_samantha	Rh1AG351500 Rh1BG315200 Rh1DG346700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	970
AccB1I	GGYRCC	1 cut(s)	970
AccI	GTMKAC	1 cut(s)	873
AccII	CGCG	3 cut(s)	95, 868, 930
AciI	CCGC	6 cut(s)	78, 87, 107, 113, 832, 930
AclWI	GGATC	2 cut(s)	543, 828
AcoI	YGGCCR	3 cut(s)	67, 177, 859
AcsI	RAATTY	2 cut(s)	442, 945
AcuI	CTGAAG	1 cut(s)	1031
AfaI	GTAC	6 cut(s)	202, 463, 477, 578, 895, 972
AfiI	CCNNNNNNNGG	2 cut(s)	21, 980
AjnI	CCWGG	2 cut(s)	446, 973
AluBI	AGCT	9 cut(s)	47, 56, 160, 185, 278, 329, 512, 560, 686
AluI	AGCT	9 cut(s)	47, 56, 160, 185, 278, 329, 512, 560, 686
Alw21I	GWGCWC	2 cut(s)	49, 187
Alw26I	GTCTC	5 cut(s)	129, 141, 641, 701, 998
AlwI	GGATC	2 cut(s)	543, 828
AlwNI	CAGNNNCTG	1 cut(s)	103
AoxI	GGCC	7 cut(s)	12, 67, 177, 294, 674, 737, 859
ApaI	GGGCCC	1 cut(s)	678
ApeKI	GCWGC	6 cut(s)	109, 115, 130, 157, 512, 557
ApoI	RAATTY	2 cut(s)	442, 945
Asp718I	GGTACC	1 cut(s)	970
AspLEI	GCGC	5 cut(s)	97, 208, 837, 868, 930
AspS9I	GGNCC	2 cut(s)	674, 675
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	323
AsuNHI	GCTAGC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	970
BanII	GRGCYC	3 cut(s)	49, 187, 678
BauI	CACGAG	1 cut(s)	824
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	2 cut(s)	49, 187
BbvI	GCAGC	6 cut(s)	121, 127, 142, 169, 499, 569
BciT130I	CCWGG	2 cut(s)	448, 975
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	5 cut(s)	129, 141, 641, 701, 998
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	2 cut(s)	128, 580
BglI	GCCNNNNNGGC	1 cut(s)	75
BglII	AGATCT	1 cut(s)	716
Bme1390I	CCNGG	3 cut(s)	432, 448, 975
BmgT120I	GGNCC	2 cut(s)	674, 675
BmiI	GGNNCC	3 cut(s)	676, 779, 972
BmrFI	CCNGG	3 cut(s)	432, 448, 975
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	2 cut(s)	803, 1005
BmtI	GCTAGC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	672
BpiI	GAAGAC	1 cut(s)	359
BplI	GAGNNNNNCTC	2 cut(s)	645, 677
BpuEI	CTTGAG	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	641
BsaJI	CCNNGG	2 cut(s)	70, 447
BsaWI	WCCGGW	1 cut(s)	952
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 980
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	441, 678
BseBI	CCWGG	2 cut(s)	448, 975
BseDI	CCNNGG	2 cut(s)	70, 447
BseGI	GGATG	2 cut(s)	262, 625
BseLI	CCNNNNNNNGG	2 cut(s)	21, 980
BseMII	CTCAG	3 cut(s)	62, 152, 575
BseNI	ACTGG	2 cut(s)	441, 678
BseRI	GAGGAG	2 cut(s)	54, 57
BseSI	GKGCMC	1 cut(s)	678
BseXI	GCAGC	6 cut(s)	121, 127, 142, 169, 499, 569
Bsh1236I	CGCG	3 cut(s)	95, 868, 930
BshFI	GGCC	7 cut(s)	14, 69, 179, 296, 676, 739, 861
BshNI	GGYRCC	1 cut(s)	970
BsiHKAI	GWGCWC	2 cut(s)	49, 187
BsiSI	CCGG	5 cut(s)	66, 168, 180, 431, 953
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	21, 980
BsmAI	GTCTC	5 cut(s)	129, 141, 641, 701, 998
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	7 cut(s)	14, 69, 179, 296, 676, 739, 861
Bso31I	GGTCTC	1 cut(s)	641
Bsp120I	GGGCCC	1 cut(s)	674
Bsp1286I	GDGCHC	3 cut(s)	49, 187, 678
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	4 cut(s)	141, 535, 716, 820
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	6 cut(s)	78, 87, 107, 113, 832, 930
BspANI	GGCC	7 cut(s)	14, 69, 179, 296, 676, 739, 861
BspCNI	CTCAG	3 cut(s)	61, 151, 574
BspFNI	CGCG	3 cut(s)	95, 868, 930
BspLI	GGNNCC	3 cut(s)	676, 779, 972
BspMAI	CTGCAG	1 cut(s)	132
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	543, 828
BspT107I	GGYRCC	1 cut(s)	970
BspTNI	GGTCTC	1 cut(s)	641
BsrFI	RCCGGY	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	441, 678
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	70, 447
BssMI	GATC	4 cut(s)	141, 535, 716, 820
BssSI	CACGAG	1 cut(s)	824
BssT1I	CCWWGG	1 cut(s)	70
Bst2BI	CACGAG	1 cut(s)	824
Bst2UI	CCWGG	2 cut(s)	448, 975
Bst4CI	ACNGT	5 cut(s)	153, 427, 700, 754, 843
Bst6I	CTCTTC	1 cut(s)	309
BstAPI	GCANNNNNTGC	2 cut(s)	103, 601
BstAUI	TGTACA	1 cut(s)	475
BstC8I	GCNNGC	6 cut(s)	67, 248, 280, 597, 729, 926
BstDEI	CTNAG	4 cut(s)	48, 138, 192, 561
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	262, 625
BstFNI	CGCG	3 cut(s)	95, 868, 930
BstHHI	GCGC	5 cut(s)	97, 208, 837, 868, 930
BstKTI	GATC	4 cut(s)	144, 538, 719, 823
BstMAI	GTCTC	5 cut(s)	129, 141, 641, 701, 998
BstMBI	GATC	4 cut(s)	141, 535, 716, 820
BstNI	CCWGG	2 cut(s)	448, 975
BstNSI	RCATGY	3 cut(s)	65, 250, 599
BstSCI	CCNGG	3 cut(s)	430, 446, 973
BstSFI	CTRYAG	2 cut(s)	128, 580
BstSLI	GKGCMC	1 cut(s)	678
BstUI	CGCG	3 cut(s)	95, 868, 930
BstV1I	GCAGC	6 cut(s)	121, 127, 142, 169, 499, 569
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	3 cut(s)	535, 716, 820
BstYI	RGATCY	3 cut(s)	535, 716, 820
BsuRI	GGCC	7 cut(s)	14, 69, 179, 296, 676, 739, 861
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	262, 625
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	3 cut(s)	101, 149, 1007
Cac8I	GCNNGC	6 cut(s)	67, 248, 280, 597, 729, 926
CaiI	CAGNNNCTG	1 cut(s)	103
CfoI	GCGC	5 cut(s)	97, 208, 837, 868, 930
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	674, 675
CsiI	ACCWGGT	1 cut(s)	973
Csp6I	GTAC	6 cut(s)	201, 462, 476, 577, 894, 971
CviAII	CATG	5 cut(s)	62, 71, 247, 457, 596
CviQI	GTAC	6 cut(s)	201, 462, 476, 577, 894, 971
DdeI	CTNAG	4 cut(s)	48, 138, 192, 561
DpnI	GATC	4 cut(s)	143, 537, 718, 822
DpnII	GATC	4 cut(s)	141, 535, 716, 820
EaeI	YGGCCR	3 cut(s)	67, 177, 859
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Ecl136II	GAGCTC	2 cut(s)	47, 185
Eco130I	CCWWGG	1 cut(s)	70
Eco147I	AGGCCT	2 cut(s)	296, 739
Eco24I	GRGCYC	3 cut(s)	49, 187, 678
Eco31I	GGTCTC	1 cut(s)	641
Eco53kI	GAGCTC	2 cut(s)	47, 185
Eco57I	CTGAAG	1 cut(s)	1031
EcoICRI	GAGCTC	2 cut(s)	47, 185
EcoRI	GAATTC	1 cut(s)	945
EcoRII	CCWGG	2 cut(s)	446, 973
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	3 cut(s)	49, 187, 678
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	5 cut(s)	65, 74, 250, 460, 599
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	5 cut(s)	61, 70, 246, 456, 595
FauNDI	CATATG	2 cut(s)	284, 397
FblI	GTMKAC	1 cut(s)	873
FokI	GGATG	2 cut(s)	269, 632
FriOI	GRGCYC	3 cut(s)	49, 187, 678
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	5 cut(s)	96, 207, 836, 867, 929
HaeIII	GGCC	7 cut(s)	14, 69, 179, 296, 676, 739, 861
HapII	CCGG	5 cut(s)	66, 168, 180, 431, 953
HhaI	GCGC	5 cut(s)	97, 208, 837, 868, 930
Hin1II	CATG	5 cut(s)	65, 74, 250, 460, 599
Hin6I	GCGC	5 cut(s)	95, 206, 835, 866, 928
HinP1I	GCGC	5 cut(s)	95, 206, 835, 866, 928
HinfI	GANTC	2 cut(s)	415, 746
HpaII	CCGG	5 cut(s)	66, 168, 180, 431, 953
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	476, 874
Hpy188I	TCNGA	6 cut(s)	51, 141, 146, 237, 256, 564
Hpy188III	TCNNGA	5 cut(s)	300, 334, 786, 826, 913
Hpy8I	GTNNAC	2 cut(s)	476, 874
HpyAV	CCTTC	3 cut(s)	29, 842, 914
HpyCH4III	ACNGT	5 cut(s)	153, 427, 700, 754, 843
HpyCH4V	TGCA	9 cut(s)	4, 130, 250, 263, 421, 515, 557, 794, 1025
HpyF3I	CTNAG	4 cut(s)	48, 138, 192, 561
Hsp92II	CATG	5 cut(s)	65, 74, 250, 460, 599
HspAI	GCGC	5 cut(s)	95, 206, 835, 866, 928
KpnI	GGTACC	1 cut(s)	974
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	141, 535, 716, 820
LmnI	GCTCC	4 cut(s)	44, 182, 653, 777
Lsp1109I	GCAGC	6 cut(s)	121, 127, 142, 169, 499, 569
LweI	GCATC	2 cut(s)	803, 1005
MabI	ACCWGGT	1 cut(s)	973
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	99, 349
MalI	GATC	4 cut(s)	143, 537, 718, 822
MboI	GATC	4 cut(s)	141, 535, 716, 820
MboII	GAAGA	4 cut(s)	326, 359, 369, 1024
MflI	RGATCY	3 cut(s)	535, 716, 820
MhlI	GDGCHC	3 cut(s)	49, 187, 678
MluCI	AATT	5 cut(s)	303, 385, 442, 789, 945
MmeI	TCCRAC	1 cut(s)	825
MroNI	GCCGGC	1 cut(s)	65
MseI	TTAA	2 cut(s)	713, 900
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	5 cut(s)	66, 168, 180, 431, 953
MspR9I	CCNGG	3 cut(s)	432, 448, 975
MvaI	CCWGG	2 cut(s)	448, 975
MvnI	CGCG	3 cut(s)	95, 868, 930
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	432
NcoI	CCATGG	1 cut(s)	70
NdeI	CATATG	2 cut(s)	284, 397
NdeII	GATC	4 cut(s)	141, 535, 716, 820
NgoMIV	GCCGGC	1 cut(s)	65
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	5 cut(s)	65, 74, 250, 460, 599
NlaIV	GGNNCC	3 cut(s)	676, 779, 972
NmeAIII	GCCGAG	2 cut(s)	196, 887
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	3 cut(s)	65, 250, 599
PaeI	GCATGC	2 cut(s)	250, 599
PceI	AGGCCT	2 cut(s)	296, 739
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	415, 746
PfoI	TCCNGGA	1 cut(s)	430
Psp124BI	GAGCTC	2 cut(s)	49, 187
Psp6I	CCWGG	2 cut(s)	446, 973
PspGI	CCWGG	2 cut(s)	446, 973
PspN4I	GGNNCC	3 cut(s)	676, 779, 972
PspOMI	GGGCCC	1 cut(s)	674
PspPI	GGNCC	2 cut(s)	674, 675
PstI	CTGCAG	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	103
PsuI	RGATCY	3 cut(s)	535, 716, 820
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	6 cut(s)	202, 463, 477, 578, 895, 972
RsaNI	GTAC	6 cut(s)	201, 462, 476, 577, 894, 971
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	2 cut(s)	49, 187
SaqAI	TTAA	2 cut(s)	713, 900
Sau3AI	GATC	4 cut(s)	141, 535, 716, 820
Sau96I	GGNCC	2 cut(s)	674, 675
ScrFI	CCNGG	3 cut(s)	432, 448, 975
SduI	GDGCHC	3 cut(s)	49, 187, 678
SexAI	ACCWGGT	1 cut(s)	973
SfaNI	GCATC	2 cut(s)	803, 1005
SfcI	CTRYAG	2 cut(s)	128, 580
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
SphI	GCATGC	2 cut(s)	250, 599
Sse9I	AATT	5 cut(s)	303, 385, 442, 789, 945
SseBI	AGGCCT	2 cut(s)	296, 739
SsiI	CCGC	6 cut(s)	78, 87, 107, 113, 832, 930
SspMI	CTAG	1 cut(s)	279
SstI	GAGCTC	2 cut(s)	49, 187
StuI	AGGCCT	2 cut(s)	296, 739
StyD4I	CCNGG	3 cut(s)	430, 446, 973
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	5 cut(s)	153, 427, 700, 754, 843
TasI	AATT	5 cut(s)	303, 385, 442, 789, 945
TatI	WGTACW	4 cut(s)	200, 461, 475, 576
TauI	GCSGC	6 cut(s)	81, 89, 109, 115, 835, 933
TfiI	GAWTC	2 cut(s)	415, 746
Tru1I	TTAA	2 cut(s)	713, 900
Tru9I	TTAA	2 cut(s)	713, 900
TscAI	CASTG	3 cut(s)	108, 156, 1014
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	6 cut(s)	109, 115, 130, 157, 512, 557
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	3 cut(s)	108, 156, 1014
XapI	RAATTY	2 cut(s)	442, 945
XceI	RCATGY	3 cut(s)	65, 250, 599
XcmI	CCANNNNNNNNNTGG	2 cut(s)	22, 529
XmiI	GTMKAC	1 cut(s)	873
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.