Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004617

Physical Location & Seq

Genomic Coordinates Forward (+)

9452817 .. 9456336

Gene Structure 3520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027194

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCAGACGGAGGCGAGAGTTGGGGTGGTGGTGGAAGGAGGAGGAGGAGCTCAGAGAGCTTTACATGCCGGCCATGGAGGCGGCGTCGCCGCAGTCGCGCAGTCACTGCCGCAGCCGCAGCCGAAGTCTCTGCAGCAGTCTCAGATCGGAACAGTGTCGCAGCTTCTCGCCGGAGGCGTGGCCGGAGCTCTAGCTAAGACTTGTACTGCGCCTCTTGCTCGGCTTACTATTCTCTTTCAGATACAAGGAATGCACTCAGATGTTACAACTATGAGAAAAGCTAGCATATGGCGTGAGGCCTCAAGAATTGCTGGTGAAGAGGGATTTAGGGCTTTCTGGAAAGGAAATCTGGTTACGATTGCTCATCGGCTTCCTTATTCTGCTGTCAATTTCTCTTCATATGAGCAGTATAAAAAGATTCTTCACAATGTTCCAGGACTGAAAAATTCCAGGGATAACATGAGTACAGACATTTGTGTACATTTTGTGGCTGGAGGTTTGGCAGGAATAACAGCTGCAACAGCCACATATCCTTTAGATCTTGTAAGGACACGCCTTGCAGCTCAGACAAATGTAATGTACTACAGAGGCATTGGGCATGCTTTGCAAACTATTAGCAGGGATGAGGGTATCTTTGGTCTCTATAAAGGACTTGGAGCAACCCTTTTGGTATGCTTCTCACTTGGGCTTCCTTTTCCAATGTCTTCATGGGTATTGGAATCTGTCAAGCCTCACTGGTACAAATGGGAGTACTCAACATTTCCATTGGATCTCGTGAGGCGGCGCAAACAGTTGGAAGGGGCTGGTGGCCGAGCGCGTGTCTACACAACAGGTCTTTTCGGTACATTTAAGCACATATTCAGGACAGAAGGCTTGCGCGGCTTATATAGAGGAATTCTACCAGAATACTACAAAGTGGTACCTGGTGTCGGCATTTGTTATATGACATACGAGACACTGAAGATGCTTCTTGCAGATGTTAGTGCTACTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

332

Amino Acids

36.06

Weight (kDa)

9.75

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	49 - 143	8.1e-22	Mitochondrial carrier protein
Mito_carr	PF00153	159 - 226	5.2e-18	Mitochondrial carrier protein
Mito_carr	PF00153	252 - 326	1.7e-16	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55640 AT3G55640 AT3G55640 AT3G55640
fragaria_vesca	FvH4_7g23560 FvH4_7g23560 FvH4_7g23560 FvH4_7g23560
malus_domestica	MD01G1141400.v1.1 MD07G1205500.v1.1
prunus_persica	Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1
pyrus_communis	pycom01g16170 pycom07g19210
rosa_chinensis	RchiOBHm_Chr1g0368721
rosa_laevigata	RLG00000027194
rosa_multiflora	Rmu_sc0001791.1_g000016
rosa_roxburghii	Rroxscaffold_4G00288330
rosa_rugosa	Rorug01G0344200 Rorug01G0344200 Rorug01G0344200 Rorug01G0344300 Rorug01G0344400
rosa_samantha	Rh1AG351500 Rh1BG315200 Rh1DG346700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	919
AccB1I	GGYRCC	1 cut(s)	919
AccI	GTMKAC	1 cut(s)	822
AccII	CGCG	3 cut(s)	98, 817, 879
AciI	CCGC	6 cut(s)	81, 90, 110, 116, 781, 879
AclWI	GGATC	1 cut(s)	777
AcoI	YGGCCR	3 cut(s)	70, 180, 808
AcsI	RAATTY	2 cut(s)	445, 894
AcuI	CTGAAG	1 cut(s)	980
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	8 cut(s)	205, 466, 480, 581, 740, 752, 844, 921
AfiI	CCNNNNNNNGG	1 cut(s)	929
AjnI	CCWGG	3 cut(s)	433, 449, 922
AluBI	AGCT	8 cut(s)	50, 59, 163, 188, 194, 281, 515, 563
AluI	AGCT	8 cut(s)	50, 59, 163, 188, 194, 281, 515, 563
Alw21I	GWGCWC	2 cut(s)	52, 190
Alw26I	GTCTC	4 cut(s)	132, 144, 644, 947
AlwI	GGATC	1 cut(s)	777
AlwNI	CAGNNNCTG	1 cut(s)	106
AoxI	GGCC	4 cut(s)	70, 180, 297, 808
ApeKI	GCWGC	6 cut(s)	112, 118, 133, 160, 515, 560
ApoI	RAATTY	2 cut(s)	445, 894
Asp718I	GGTACC	1 cut(s)	919
AspLEI	GCGC	5 cut(s)	100, 211, 786, 817, 879
AsuHPI	GGTGA	1 cut(s)	326
AsuNHI	GCTAGC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	919
BanII	GRGCYC	2 cut(s)	52, 190
BauI	CACGAG	1 cut(s)	773
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	2 cut(s)	52, 190
BbvI	GCAGC	6 cut(s)	124, 130, 145, 172, 502, 572
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	3 cut(s)	435, 451, 924
BcoDI	GTCTC	4 cut(s)	132, 144, 644, 947
BfaI	CTAG	2 cut(s)	191, 282
BfmI	CTRYAG	2 cut(s)	131, 583
BglI	GCCNNNNNGGC	1 cut(s)	78
BglII	AGATCT	1 cut(s)	538
BmcAI	AGTACT	1 cut(s)	752
Bme1390I	CCNGG	3 cut(s)	435, 451, 924
BmiI	GGNNCC	1 cut(s)	921
BmrFI	CCNGG	3 cut(s)	435, 451, 924
BmsI	GCATC	1 cut(s)	954
BmtI	GCTAGC	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	696
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	73, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	929
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	740
BseBI	CCWGG	3 cut(s)	435, 451, 924
BseDI	CCNNGG	2 cut(s)	73, 450
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	1 cut(s)	929
BseMII	CTCAG	4 cut(s)	65, 155, 270, 578
BseNI	ACTGG	1 cut(s)	740
BseRI	GAGGAG	3 cut(s)	54, 57, 60
BseXI	GCAGC	6 cut(s)	124, 130, 145, 172, 502, 572
Bsh1236I	CGCG	3 cut(s)	98, 817, 879
BshFI	GGCC	4 cut(s)	72, 182, 299, 810
BshNI	GGYRCC	1 cut(s)	919
BsiHKAI	GWGCWC	2 cut(s)	52, 190
BsiSI	CCGG	3 cut(s)	69, 171, 183
BslI	CCNNNNNNNGG	1 cut(s)	929
BsmAI	GTCTC	4 cut(s)	132, 144, 644, 947
BsmI	GAATGC	1 cut(s)	255
BsnI	GGCC	4 cut(s)	72, 182, 299, 810
Bso31I	GGTCTC	1 cut(s)	644
Bsp1286I	GDGCHC	2 cut(s)	52, 190
Bsp1407I	TGTACA	1 cut(s)	478
Bsp143I	GATC	3 cut(s)	144, 538, 769
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	6 cut(s)	81, 90, 110, 116, 781, 879
BspANI	GGCC	4 cut(s)	72, 182, 299, 810
BspCNI	CTCAG	4 cut(s)	64, 154, 269, 577
BspFNI	CGCG	3 cut(s)	98, 817, 879
BspLI	GGNNCC	1 cut(s)	921
BspMAI	CTGCAG	1 cut(s)	135
BspOI	GCTAGC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	777
BspT107I	GGYRCC	1 cut(s)	919
BspTNI	GGTCTC	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	740
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	73, 450
BssMI	GATC	3 cut(s)	144, 538, 769
BssNI	GRCGYC	1 cut(s)	84
BssSI	CACGAG	1 cut(s)	773
BssT1I	CCWWGG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	773
Bst2UI	CCWGG	3 cut(s)	435, 451, 924
Bst4CI	ACNGT	2 cut(s)	154, 792
Bst6I	CTCTTC	2 cut(s)	312, 400
BstACI	GRCGYC	1 cut(s)	84
BstAPI	GCANNNNNTGC	2 cut(s)	106, 604
BstAUI	TGTACA	1 cut(s)	478
BstC8I	GCNNGC	4 cut(s)	70, 283, 600, 875
BstDEI	CTNAG	5 cut(s)	51, 141, 195, 256, 564
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	3 cut(s)	98, 817, 879
BstHHI	GCGC	5 cut(s)	100, 211, 786, 817, 879
BstKTI	GATC	3 cut(s)	147, 541, 772
BstMAI	GTCTC	4 cut(s)	132, 144, 644, 947
BstMBI	GATC	3 cut(s)	144, 538, 769
BstNI	CCWGG	3 cut(s)	435, 451, 924
BstNSI	RCATGY	2 cut(s)	68, 602
BstSCI	CCNGG	3 cut(s)	433, 449, 922
BstSFI	CTRYAG	2 cut(s)	131, 583
BstUI	CGCG	3 cut(s)	98, 817, 879
BstV1I	GCAGC	6 cut(s)	124, 130, 145, 172, 502, 572
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	2 cut(s)	538, 769
BstYI	RGATCY	2 cut(s)	538, 769
BsuRI	GGCC	4 cut(s)	72, 182, 299, 810
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	628
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	4 cut(s)	104, 159, 733, 956
Cac8I	GCNNGC	4 cut(s)	70, 283, 600, 875
CaiI	CAGNNNCTG	1 cut(s)	106
CfoI	GCGC	5 cut(s)	100, 211, 786, 817, 879
Cfr10I	RCCGGY	1 cut(s)	68
CseI	GACGC	1 cut(s)	73
CsiI	ACCWGGT	1 cut(s)	922
Csp6I	GTAC	8 cut(s)	204, 465, 479, 580, 739, 751, 843, 920
CviAII	CATG	5 cut(s)	65, 74, 460, 599, 708
CviQI	GTAC	8 cut(s)	204, 465, 479, 580, 739, 751, 843, 920
DdeI	CTNAG	5 cut(s)	51, 141, 195, 256, 564
DpnI	GATC	3 cut(s)	146, 540, 771
DpnII	GATC	3 cut(s)	144, 538, 769
EaeI	YGGCCR	3 cut(s)	70, 180, 808
Eam1104I	CTCTTC	2 cut(s)	312, 400
EarI	CTCTTC	2 cut(s)	312, 400
Ecl136II	GAGCTC	2 cut(s)	50, 188
Eco130I	CCWWGG	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	299
Eco24I	GRGCYC	2 cut(s)	52, 190
Eco31I	GGTCTC	1 cut(s)	644
Eco53kI	GAGCTC	2 cut(s)	50, 188
Eco57I	CTGAAG	1 cut(s)	980
EcoICRI	GAGCTC	2 cut(s)	50, 188
EcoRI	GAATTC	1 cut(s)	894
EcoRII	CCWGG	3 cut(s)	433, 449, 922
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	2 cut(s)	52, 190
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	5 cut(s)	68, 77, 463, 602, 711
FatI	CATG	5 cut(s)	64, 73, 459, 598, 707
FauNDI	CATATG	2 cut(s)	287, 400
FblI	GTMKAC	1 cut(s)	822
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	2 cut(s)	52, 190
FspBI	CTAG	2 cut(s)	191, 282
GlaI	GCGC	5 cut(s)	99, 210, 785, 816, 878
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	4 cut(s)	72, 182, 299, 810
HapII	CCGG	3 cut(s)	69, 171, 183
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	5 cut(s)	100, 211, 786, 817, 879
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	68, 77, 463, 602, 711
Hin6I	GCGC	5 cut(s)	98, 209, 784, 815, 877
HinP1I	GCGC	5 cut(s)	98, 209, 784, 815, 877
HinfI	GANTC	2 cut(s)	418, 719
HpaII	CCGG	3 cut(s)	69, 171, 183
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	479, 823
Hpy188I	TCNGA	6 cut(s)	54, 144, 149, 240, 259, 567
Hpy188III	TCNNGA	4 cut(s)	303, 337, 775, 862
Hpy8I	GTNNAC	2 cut(s)	479, 823
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	29, 791, 863
HpyCH4III	ACNGT	2 cut(s)	154, 792
HpyCH4V	TGCA	7 cut(s)	4, 133, 253, 518, 560, 607, 974
HpyF3I	CTNAG	5 cut(s)	51, 141, 195, 256, 564
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	68, 77, 463, 602, 711
HspAI	GCGC	5 cut(s)	98, 209, 784, 815, 877
KpnI	GGTACC	1 cut(s)	923
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	144, 538, 769
LmnI	GCTCC	3 cut(s)	47, 185, 656
Lsp1109I	GCAGC	6 cut(s)	124, 130, 145, 172, 502, 572
LweI	GCATC	1 cut(s)	954
MabI	ACCWGGT	1 cut(s)	922
MaeI	CTAG	2 cut(s)	191, 282
MaeIII	GTNAC	3 cut(s)	102, 262, 352
MalI	GATC	3 cut(s)	146, 540, 771
MboI	GATC	3 cut(s)	144, 538, 769
MboII	GAAGA	5 cut(s)	329, 387, 413, 696, 973
MflI	RGATCY	2 cut(s)	538, 769
MhlI	GDGCHC	2 cut(s)	52, 190
MluCI	AATT	4 cut(s)	306, 388, 445, 894
MmeI	TCCRAC	1 cut(s)	774
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	1 cut(s)	849
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	3 cut(s)	69, 171, 183
MspR9I	CCNGG	3 cut(s)	435, 451, 924
Mva1269I	GAATGC	1 cut(s)	255
MvaI	CCWGG	3 cut(s)	435, 451, 924
MvnI	CGCG	3 cut(s)	98, 817, 879
NaeI	GCCGGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	73
NdeI	CATATG	2 cut(s)	287, 400
NdeII	GATC	3 cut(s)	144, 538, 769
NgoMIV	GCCGGC	1 cut(s)	68
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	5 cut(s)	68, 77, 463, 602, 711
NlaIV	GGNNCC	1 cut(s)	921
NmeAIII	GCCGAG	2 cut(s)	199, 836
NmuCI	GTSAC	1 cut(s)	102
NspI	RCATGY	2 cut(s)	68, 602
PaeI	GCATGC	1 cut(s)	602
PceI	AGGCCT	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	255
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	418, 719
PfoI	TCCNGGA	1 cut(s)	433
Psp124BI	GAGCTC	2 cut(s)	52, 190
Psp6I	CCWGG	3 cut(s)	433, 449, 922
PspGI	CCWGG	3 cut(s)	433, 449, 922
PspN4I	GGNNCC	1 cut(s)	921
PstI	CTGCAG	1 cut(s)	135
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	2 cut(s)	538, 769
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	8 cut(s)	205, 466, 480, 581, 740, 752, 844, 921
RsaNI	GTAC	8 cut(s)	204, 465, 479, 580, 739, 751, 843, 920
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	2 cut(s)	52, 190
SaqAI	TTAA	1 cut(s)	849
Sau3AI	GATC	3 cut(s)	144, 538, 769
ScaI	AGTACT	1 cut(s)	752
ScrFI	CCNGG	3 cut(s)	435, 451, 924
SduI	GDGCHC	2 cut(s)	52, 190
SexAI	ACCWGGT	1 cut(s)	922
SfaNI	GCATC	1 cut(s)	954
SfcI	CTRYAG	2 cut(s)	131, 583
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	4 cut(s)	306, 388, 445, 894
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	6 cut(s)	81, 90, 110, 116, 781, 879
SspMI	CTAG	2 cut(s)	191, 282
SstI	GAGCTC	2 cut(s)	52, 190
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	3 cut(s)	433, 449, 922
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	154, 792
TasI	AATT	4 cut(s)	306, 388, 445, 894
TatI	WGTACW	5 cut(s)	203, 464, 478, 579, 750
TauI	GCSGC	6 cut(s)	84, 92, 112, 118, 784, 882
TfiI	GAWTC	2 cut(s)	418, 719
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TscAI	CASTG	4 cut(s)	111, 159, 740, 963
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	6 cut(s)	112, 118, 133, 160, 515, 560
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	387, 696
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	4 cut(s)	111, 159, 740, 963
XapI	RAATTY	2 cut(s)	445, 894
XceI	RCATGY	2 cut(s)	68, 602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	705
XmiI	GTMKAC	1 cut(s)	822
XspI	CTAG	2 cut(s)	191, 282
ZrmI	AGTACT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.