Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004617

Physical Location & Seq

Genomic Coordinates Reverse (-)

15832145 .. 15834635

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16170.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCAGACGGAGGCGAGAGTTGGGGTGGTGGTGGAAGGAGGGCAGATTGCTCTGAATACCGGCCATGGAGGCGTGGCCGTCGAAGGCGGCGTGAGGTCGCTCGCGCAGTCGCTGCCGCAGAAACAGACGAAGCCGCTGCACCAACAGCAGTCTCAGATCGGTACGGTGTCACAGCTTCTCGCCGGAGGAGTCGCCGGCGCTCTCAGTAAGACTTGCACGGCGCCTCTTGCTCGGCTCACTATTCTCTTTCAGGTGCAAGGTATGCACTCAGATGTTGCAACGATGCGAAAAGCTAGCATATGGCATGAGGCCTCCAGAATTGCTGGTGAAGAAGGATTTAGAGCTTTCTGGAAAGGAAATTTGGTGACAATTGCTCATCGTCTTCCATATTCTTCCGTCAATTTCTACTCATATGAGCAGTATAAAAAGTTCCTAAAAAATGTTCCTGGACTGGAAAATCATAGGGACAACTTAAGTACAGACCTTGGTGTGCATTTTGTGGGTGGAGGATTGGCCGGAATAACAGCTGCATCAGTTACATATCCTTTGGATCTTGTAAGGACACGCCTTGCAGCTCAGACAAACGTGATGTACTACAAAGGAATTTGGCATACACTGCGAACTATTACCCAGGATGAGGGTATTTTTGGCCTCTATAAGGGACTCGGAGCAACCCTCTTGGGTGTTGGGCCCAGTATAGCTATCAGTTTTTCAGTGTATGAGACCTTGAGAGCTTATTGGCAGTCACATAGGCCTGAGGATTCTACTGTGTTGGTTAGTCTTGCTTGTGGGAGCCTTTCAGGAATTGCATCATCAACAGAGAAAACAGGTTGTGGTGCAGGCTCTGCACCAAGTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

287

Amino Acids

30.45

Weight (kDa)

9.24

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55640 AT3G55640 AT3G55640 AT3G55640
fragaria_vesca	FvH4_7g23560 FvH4_7g23560 FvH4_7g23560 FvH4_7g23560
malus_domestica	MD01G1141400.v1.1 MD07G1205500.v1.1
prunus_persica	Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1
pyrus_communis	pycom01g16170 pycom07g19210
rosa_chinensis	RchiOBHm_Chr1g0368721
rosa_laevigata	RLG00000027194
rosa_multiflora	Rmu_sc0001791.1_g000016
rosa_roxburghii	Rroxscaffold_4G00288330
rosa_rugosa	Rorug01G0344200 Rorug01G0344200 Rorug01G0344200 Rorug01G0344300 Rorug01G0344400
rosa_samantha	Rh1AG351500 Rh1BG315200 Rh1DG346700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AccII	CGCG	1 cut(s)	104
AciI	CCGC	3 cut(s)	87, 116, 134
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	3 cut(s)	61, 75, 513
AcsI	RAATTY	2 cut(s)	358, 603
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	3 cut(s)	163, 478, 593
AfiI	CCNNNNNNNGG	2 cut(s)	637, 658
AflII	CTTAAG	1 cut(s)	472
AjnI	CCWGG	2 cut(s)	445, 630
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	7 cut(s)	175, 293, 344, 527, 575, 701, 734
AluI	AGCT	7 cut(s)	175, 293, 344, 527, 575, 701, 734
Alw26I	GTCTC	2 cut(s)	156, 716
AlwI	GGATC	1 cut(s)	558
AlwNI	CAGNNNCTG	2 cut(s)	112, 845
AoxI	GGCC	7 cut(s)	61, 75, 309, 513, 649, 689, 752
ApaI	GGGCCC	1 cut(s)	693
ApeKI	GCWGC	4 cut(s)	112, 136, 527, 572
ApoI	RAATTY	2 cut(s)	358, 603
AspLEI	GCGC	3 cut(s)	106, 200, 223
AspS9I	GGNCC	2 cut(s)	689, 690
AsuHPI	GGTGA	2 cut(s)	338, 376
AsuNHI	GCTAGC	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	756
BaeGI	GKGCMC	1 cut(s)	693
BanI	GGYRCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	374
BbvI	GCAGC	4 cut(s)	99, 123, 514, 584
BceAI	ACGGC	2 cut(s)	62, 234
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	2 cut(s)	447, 632
BcoDI	GTCTC	2 cut(s)	156, 716
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	2 cut(s)	201, 224
BfrI	CTTAAG	1 cut(s)	472
BglI	GCCNNNNNGGC	1 cut(s)	69
BisI	GCNGC	7 cut(s)	88, 113, 116, 134, 137, 528, 573
BlsI	GCNGC	7 cut(s)	89, 114, 117, 135, 138, 529, 574
Bme1390I	CCNGG	2 cut(s)	447, 632
BmgT120I	GGNCC	2 cut(s)	689, 690
BmiI	GGNNCC	3 cut(s)	222, 691, 794
BmrFI	CCNGG	2 cut(s)	447, 632
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	3 cut(s)	273, 539, 818
BmtI	GCTAGC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	660, 692
BpmI	CTGGAG	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	748
BsaHI	GRCGYC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	3 cut(s)	64, 484, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	637, 658
Bse118I	RCCGGY	2 cut(s)	59, 194
Bse1I	ACTGG	2 cut(s)	456, 693
Bse21I	CCTNAGG	1 cut(s)	756
BseBI	CCWGG	2 cut(s)	447, 632
BseDI	CCNNGG	3 cut(s)	64, 484, 630
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	2 cut(s)	637, 658
BseMII	CTCAG	5 cut(s)	167, 217, 282, 590, 747
BseNI	ACTGG	2 cut(s)	456, 693
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	693
BseXI	GCAGC	4 cut(s)	99, 123, 514, 584
BsgI	GTGCAG	3 cut(s)	122, 831, 858
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	7 cut(s)	63, 77, 311, 515, 651, 691, 754
BshNI	GGYRCC	1 cut(s)	220
BsiSI	CCGG	4 cut(s)	60, 183, 195, 516
BslFI	GGGAC	2 cut(s)	479, 675
BslI	CCNNNNNNNGG	2 cut(s)	637, 658
BsmAI	GTCTC	2 cut(s)	156, 716
BsmFI	GGGAC	2 cut(s)	479, 675
BsnI	GGCC	7 cut(s)	63, 77, 311, 515, 651, 691, 754
Bso31I	GGTCTC	1 cut(s)	716
Bsp120I	GGGCCC	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	2 cut(s)	156, 550
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	3 cut(s)	87, 116, 134
BspANI	GGCC	7 cut(s)	63, 77, 311, 515, 651, 691, 754
BspCNI	CTCAG	5 cut(s)	166, 216, 281, 589, 748
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	3 cut(s)	222, 691, 794
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	472
BspTNI	GGTCTC	1 cut(s)	716
BsrFI	RCCGGY	2 cut(s)	59, 194
BsrI	ACTGG	2 cut(s)	456, 693
BssAI	RCCGGY	2 cut(s)	59, 194
BssECI	CCNNGG	3 cut(s)	64, 484, 630
BssMI	GATC	2 cut(s)	156, 550
BssNI	GRCGYC	1 cut(s)	221
BssT1I	CCWWGG	2 cut(s)	64, 484
Bst2UI	CCWGG	2 cut(s)	447, 632
Bst4CI	ACNGT	2 cut(s)	166, 769
BstACI	GRCGYC	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	472
BstAPI	GCANNNNNTGC	4 cut(s)	112, 262, 616, 845
BstC8I	GCNNGC	4 cut(s)	102, 196, 295, 841
BstDEI	CTNAG	5 cut(s)	153, 203, 268, 576, 756
BstDSI	CCRYGG	1 cut(s)	64
BstENI	CCTNNNNNAGG	1 cut(s)	656
BstF5I	GGATG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	104
BstH2I	RGCGCY	2 cut(s)	201, 224
BstHHI	GCGC	3 cut(s)	106, 200, 223
BstKTI	GATC	2 cut(s)	159, 553
BstMAI	GTCTC	2 cut(s)	156, 716
BstMBI	GATC	2 cut(s)	156, 550
BstMWI	GCNNNNNNNGC	7 cut(s)	69, 112, 145, 227, 262, 616, 845
BstNI	CCWGG	2 cut(s)	447, 632
BstSCI	CCNGG	2 cut(s)	445, 630
BstSLI	GKGCMC	1 cut(s)	693
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	4 cut(s)	99, 123, 514, 584
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
Bsu36I	CCTNAGG	1 cut(s)	756
BsuRI	GGCC	7 cut(s)	63, 77, 311, 515, 651, 691, 754
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	640
BtsI	GCAGTG	1 cut(s)	614
BtsIMutI	CAGTG	2 cut(s)	614, 720
Cac8I	GCNNGC	4 cut(s)	102, 196, 295, 841
CaiI	CAGNNNCTG	2 cut(s)	112, 845
CfoI	GCGC	3 cut(s)	106, 200, 223
Cfr10I	RCCGGY	2 cut(s)	59, 194
Cfr13I	GGNCC	2 cut(s)	689, 690
Csp6I	GTAC	3 cut(s)	162, 477, 592
CviAII	CATG	2 cut(s)	65, 305
CviQI	GTAC	3 cut(s)	162, 477, 592
DdeI	CTNAG	5 cut(s)	153, 203, 268, 576, 756
DinI	GGCGCC	1 cut(s)	222
DpnI	GATC	2 cut(s)	158, 552
DpnII	GATC	2 cut(s)	156, 550
EaeI	YGGCCR	3 cut(s)	61, 75, 513
Eco130I	CCWWGG	2 cut(s)	64, 484
Eco147I	AGGCCT	2 cut(s)	311, 754
Eco24I	GRGCYC	1 cut(s)	693
Eco31I	GGTCTC	1 cut(s)	716
Eco81I	CCTNAGG	1 cut(s)	756
EcoNI	CCTNNNNNAGG	1 cut(s)	656
EcoRII	CCWGG	2 cut(s)	445, 630
EcoT14I	CCWWGG	2 cut(s)	64, 484
EcoT38I	GRGCYC	1 cut(s)	693
EgeI	GGCGCC	1 cut(s)	222
EheI	GGCGCC	1 cut(s)	222
ErhI	CCWWGG	2 cut(s)	64, 484
FaeI	CATG	2 cut(s)	68, 308
FaqI	GGGAC	2 cut(s)	479, 675
FatI	CATG	2 cut(s)	64, 304
FauNDI	CATATG	2 cut(s)	299, 412
Fnu4HI	GCNGC	7 cut(s)	88, 113, 116, 134, 137, 528, 573
FokI	GGATG	1 cut(s)	647
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	7 cut(s)	88, 113, 116, 134, 137, 528, 573
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	3 cut(s)	105, 199, 222
GluI	GCNGC	7 cut(s)	88, 113, 116, 134, 137, 528, 573
GsuI	CTGGAG	1 cut(s)	298
HaeII	RGCGCY	2 cut(s)	201, 224
HaeIII	GGCC	7 cut(s)	63, 77, 311, 515, 651, 691, 754
HapII	CCGG	4 cut(s)	60, 183, 195, 516
HhaI	GCGC	3 cut(s)	106, 200, 223
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	68, 308
Hin6I	GCGC	3 cut(s)	104, 198, 221
HinP1I	GCGC	3 cut(s)	104, 198, 221
HinfI	GANTC	3 cut(s)	189, 663, 761
HpaII	CCGG	4 cut(s)	60, 183, 195, 516
HphI	GGTGA	2 cut(s)	338, 376
Hpy188I	TCNGA	5 cut(s)	54, 156, 271, 579, 668
Hpy188III	TCNNGA	3 cut(s)	315, 349, 801
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	29, 77, 326
HpyCH4III	ACNGT	2 cut(s)	166, 769
HpyCH4IV	ACGT	1 cut(s)	585
HpyF10VI	GCNNNNNNNGC	7 cut(s)	69, 112, 145, 227, 262, 616, 845
HpyF3I	CTNAG	5 cut(s)	153, 203, 268, 576, 756
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	68, 308
HspAI	GCGC	3 cut(s)	104, 198, 221
KasI	GGCGCC	1 cut(s)	220
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	156, 550
LmnI	GCTCC	2 cut(s)	668, 792
Lsp1109I	GCAGC	4 cut(s)	99, 123, 514, 584
LweI	GCATC	3 cut(s)	273, 539, 818
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	4 cut(s)	168, 364, 535, 744
MalI	GATC	2 cut(s)	158, 552
MboI	GATC	2 cut(s)	156, 550
MboII	GAAGA	3 cut(s)	341, 374, 384
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	6 cut(s)	318, 358, 369, 400, 603, 804
Mly113I	GGCGCC	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	198, 657
MreI	CGCCGGCG	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	194
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	2 cut(s)	136, 527
MspCI	CTTAAG	1 cut(s)	472
MspI	CCGG	4 cut(s)	60, 183, 195, 516
MspR9I	CCNGG	2 cut(s)	447, 632
MunI	CAATTG	1 cut(s)	369
MvaI	CCWGG	2 cut(s)	447, 632
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	7 cut(s)	69, 112, 145, 227, 262, 616, 845
NaeI	GCCGGC	1 cut(s)	196
NarI	GGCGCC	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	64
NdeI	CATATG	2 cut(s)	299, 412
NdeII	GATC	2 cut(s)	156, 550
NgoMIV	GCCGGC	1 cut(s)	194
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	2 cut(s)	68, 308
NlaIV	GGNNCC	3 cut(s)	222, 691, 794
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	168, 364, 744
PceI	AGGCCT	2 cut(s)	311, 754
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	761
PfoI	TCCNGGA	1 cut(s)	445
PkrI	GCNGC	7 cut(s)	89, 114, 117, 135, 138, 529, 574
PleI	GAGTC	2 cut(s)	197, 657
PluTI	GGCGCC	1 cut(s)	224
PpsI	GAGTC	2 cut(s)	197, 657
Psp6I	CCWGG	2 cut(s)	445, 630
PspGI	CCWGG	2 cut(s)	445, 630
PspN4I	GGNNCC	3 cut(s)	222, 691, 794
PspOMI	GGGCCC	1 cut(s)	689
PspPI	GGNCC	2 cut(s)	689, 690
PsrI	GAACNNNNNNTAC	2 cut(s)	413, 445
PstNI	CAGNNNCTG	2 cut(s)	112, 845
PsuI	RGATCY	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	3 cut(s)	163, 478, 593
RsaNI	GTAC	3 cut(s)	162, 477, 592
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	7 cut(s)	88, 113, 116, 134, 137, 528, 573
Sau3AI	GATC	2 cut(s)	156, 550
Sau96I	GGNCC	2 cut(s)	689, 690
SchI	GAGTC	2 cut(s)	198, 657
ScrFI	CCNGG	2 cut(s)	447, 632
SduI	GDGCHC	1 cut(s)	693
SfaNI	GCATC	3 cut(s)	273, 539, 818
SfoI	GGCGCC	1 cut(s)	222
SgrAI	CRCCGGYG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	472, 727
SmoI	CTYRAG	2 cut(s)	472, 727
Sse9I	AATT	6 cut(s)	318, 358, 369, 400, 603, 804
SseBI	AGGCCT	2 cut(s)	311, 754
SsiI	CCGC	3 cut(s)	87, 116, 134
SspDI	GGCGCC	1 cut(s)	220
SspMI	CTAG	1 cut(s)	294
StuI	AGGCCT	2 cut(s)	311, 754
StyD4I	CCNGG	2 cut(s)	445, 630
StyI	CCWWGG	2 cut(s)	64, 484
TaaI	ACNGT	2 cut(s)	166, 769
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	1 cut(s)	81
TasI	AATT	6 cut(s)	318, 358, 369, 400, 603, 804
TatI	WGTACW	2 cut(s)	476, 591
TauI	GCSGC	3 cut(s)	90, 118, 136
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	2 cut(s)	621, 720
TseFI	GTSAC	3 cut(s)	168, 364, 744
TseI	GCWGC	4 cut(s)	112, 136, 527, 572
Tsp45I	GTSAC	3 cut(s)	168, 364, 744
TspGWI	ACGGA	2 cut(s)	23, 385
TspRI	CASTG	2 cut(s)	621, 720
Vha464I	CTTAAG	1 cut(s)	472
XagI	CCTNNNNNAGG	1 cut(s)	656
XapI	RAATTY	2 cut(s)	358, 603
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.