Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004617

Physical Location & Seq

Genomic Coordinates Reverse (-)

44891972 .. 44896318

Gene Structure 4347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG315200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCAGACGGAGGCGAGAGTTGGGGTGGTGGTGGAAGGAGGAGGAGCTCAGAGAGCTTTACATGCCGGCCATGGAGGCGGCGTCGCCGCAGTCGCGCAGTCACTGCCGCAGCCGCAGCCGAAGTCGAAGTCTCTGCAGCAGTCTCAGATCGGAACAGTGTCGCATCTTCTCGCCGGAGGCGTGGCCGGAGCTCTGGCTAAGACTTGTACTGCGCCTCTTGCTCGGCTTACTATACTCTTTCAGGTACAAGGCATGCACTCGGATGTTGCAACTATGAGAAAAGCTAGCTTATGGCGTGAGGCCTCAAGAATTGCTGGTGAAGAGGGATTTAGAGCTTTCTGGAAAGGAAATCTGGTTACGATTGCTCATCGTCTTCCTTATTCTTCTGTCAATTTCTATTCATATGAGCAGTATAAAAAGATTCTGCATACAGTTCCGGGACTGGAAAATTCCAGGGATAACATGAGTACAGACATTTGTGTACATTTTGTGGGTGGAGGTTTGGCAGGAATAACAGCTGCAACAGCCACATATCCTTTGGATCTTGTAAGGACACGCCTTGCAGCTCAGACAAATGTAATGTACTACAGAGGCATTGGGCATGCTTTGCAAACTATTAGCAGGGATGAGGGTATCTTTGGTCTCTATAAAGGACTTGGAGCAACCCTCTTGGGTGTTGGGCCCAGTATAGCTATCAGTTTTACAGTATATGAGACATTAAGATCTTATTGGCAGGCAAACAGGCCTGATGATTCTACTGTGCTGGTTAGTCTTGCTTGTGGGAGCCTTTCAGGAATTGCATCATCAACAGGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

272

Amino Acids

28.78

Weight (kDa)

9.3

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	50 - 144	3.7e-21	Mitochondrial carrier protein
Mito_carr	PF00153	160 - 245	1.9e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55640 AT3G55640 AT3G55640 AT3G55640
fragaria_vesca	FvH4_7g23560 FvH4_7g23560 FvH4_7g23560 FvH4_7g23560
malus_domestica	MD01G1141400.v1.1 MD07G1205500.v1.1
prunus_persica	Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1
pyrus_communis	pycom01g16170 pycom07g19210
rosa_chinensis	RchiOBHm_Chr1g0368721
rosa_laevigata	RLG00000027194
rosa_multiflora	Rmu_sc0001791.1_g000016
rosa_roxburghii	Rroxscaffold_4G00288330
rosa_rugosa	Rorug01G0344200 Rorug01G0344200 Rorug01G0344200 Rorug01G0344300 Rorug01G0344400
rosa_samantha	Rh1AG351500 Rh1BG315200 Rh1DG346700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	95
AciI	CCGC	4 cut(s)	78, 87, 107, 113
AclWI	GGATC	1 cut(s)	549
AcoI	YGGCCR	2 cut(s)	67, 183
AcsI	RAATTY	1 cut(s)	448
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	5 cut(s)	208, 246, 469, 483, 584
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	9 cut(s)	47, 56, 191, 284, 288, 335, 518, 566, 692
AluI	AGCT	9 cut(s)	47, 56, 191, 284, 288, 335, 518, 566, 692
Alw21I	GWGCWC	2 cut(s)	49, 193
Alw26I	GTCTC	4 cut(s)	135, 147, 647, 707
AlwI	GGATC	1 cut(s)	549
AlwNI	CAGNNNCTG	1 cut(s)	103
AoxI	GGCC	5 cut(s)	67, 183, 300, 680, 743
ApaI	GGGCCC	1 cut(s)	684
ApeKI	GCWGC	5 cut(s)	109, 115, 136, 518, 563
ApoI	RAATTY	1 cut(s)	448
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspLEI	GCGC	2 cut(s)	97, 214
AspS9I	GGNCC	2 cut(s)	680, 681
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	684
BanII	GRGCYC	3 cut(s)	49, 193, 684
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	2 cut(s)	49, 193
BbvI	GCAGC	5 cut(s)	121, 127, 148, 505, 575
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	4 cut(s)	135, 147, 647, 707
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	2 cut(s)	134, 586
BglI	GCCNNNNNGGC	1 cut(s)	75
BglII	AGATCT	1 cut(s)	722
BisI	GCNGC	9 cut(s)	79, 87, 107, 110, 113, 116, 137, 519, 564
BlsI	GCNGC	9 cut(s)	80, 88, 108, 111, 114, 117, 138, 520, 565
Bme1390I	CCNGG	2 cut(s)	438, 454
BmgT120I	GGNCC	2 cut(s)	680, 681
BmiI	GGNNCC	2 cut(s)	682, 785
BmrFI	CCNGG	2 cut(s)	438, 454
BmrI	ACTGGG	1 cut(s)	678
BmsI	GCATC	2 cut(s)	172, 809
BmtI	GCTAGC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	365
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
BpuEI	CTTGAG	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	2 cut(s)	70, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	447, 684
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	2 cut(s)	70, 453
BseGI	GGATG	2 cut(s)	268, 631
BseMII	CTCAG	3 cut(s)	62, 158, 581
BseNI	ACTGG	2 cut(s)	447, 684
BseRI	GAGGAG	2 cut(s)	54, 57
BseSI	GKGCMC	1 cut(s)	684
BseXI	GCAGC	5 cut(s)	121, 127, 148, 505, 575
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	5 cut(s)	69, 185, 302, 682, 745
BsiHKAI	GWGCWC	2 cut(s)	49, 193
BsiSI	CCGG	4 cut(s)	66, 174, 186, 437
BslFI	GGGAC	1 cut(s)	453
BsmAI	GTCTC	4 cut(s)	135, 147, 647, 707
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	5 cut(s)	69, 185, 302, 682, 745
Bso31I	GGTCTC	1 cut(s)	647
Bsp120I	GGGCCC	1 cut(s)	680
Bsp1286I	GDGCHC	3 cut(s)	49, 193, 684
Bsp1407I	TGTACA	1 cut(s)	481
Bsp143I	GATC	3 cut(s)	147, 541, 722
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	4 cut(s)	78, 87, 107, 113
BspANI	GGCC	5 cut(s)	69, 185, 302, 682, 745
BspCNI	CTCAG	3 cut(s)	61, 157, 580
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	682, 785
BspMAI	CTGCAG	1 cut(s)	138
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	549
BspTNI	GGTCTC	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	481
BsrI	ACTGG	2 cut(s)	447, 684
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	70, 453
BssMI	GATC	3 cut(s)	147, 541, 722
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	4 cut(s)	157, 433, 706, 760
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	2 cut(s)	103, 607
BstAUI	TGTACA	1 cut(s)	481
BstC8I	GCNNGC	5 cut(s)	67, 254, 286, 603, 735
BstDEI	CTNAG	4 cut(s)	48, 144, 198, 567
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	268, 631
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	97, 214
BstKTI	GATC	3 cut(s)	150, 544, 725
BstMAI	GTCTC	4 cut(s)	135, 147, 647, 707
BstMBI	GATC	3 cut(s)	147, 541, 722
BstNI	CCWGG	1 cut(s)	454
BstNSI	RCATGY	3 cut(s)	65, 256, 605
BstSCI	CCNGG	2 cut(s)	436, 452
BstSFI	CTRYAG	2 cut(s)	134, 586
BstSLI	GKGCMC	1 cut(s)	684
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	5 cut(s)	121, 127, 148, 505, 575
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	2 cut(s)	541, 722
BstYI	RGATCY	2 cut(s)	541, 722
BsuRI	GGCC	5 cut(s)	69, 185, 302, 682, 745
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	268, 631
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	101, 162
Cac8I	GCNNGC	5 cut(s)	67, 254, 286, 603, 735
CaiI	CAGNNNCTG	1 cut(s)	103
CfoI	GCGC	2 cut(s)	97, 214
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	680, 681
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	5 cut(s)	207, 245, 468, 482, 583
CviAII	CATG	5 cut(s)	62, 71, 253, 463, 602
CviQI	GTAC	5 cut(s)	207, 245, 468, 482, 583
DdeI	CTNAG	4 cut(s)	48, 144, 198, 567
DpnI	GATC	3 cut(s)	149, 543, 724
DpnII	GATC	3 cut(s)	147, 541, 722
EaeI	YGGCCR	2 cut(s)	67, 183
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Ecl136II	GAGCTC	2 cut(s)	47, 191
Eco130I	CCWWGG	1 cut(s)	70
Eco147I	AGGCCT	2 cut(s)	302, 745
Eco24I	GRGCYC	3 cut(s)	49, 193, 684
Eco31I	GGTCTC	1 cut(s)	647
Eco53kI	GAGCTC	2 cut(s)	47, 191
EcoICRI	GAGCTC	2 cut(s)	47, 191
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	3 cut(s)	49, 193, 684
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	5 cut(s)	65, 74, 256, 466, 605
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	5 cut(s)	61, 70, 252, 462, 601
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	9 cut(s)	79, 87, 107, 110, 113, 116, 137, 519, 564
FokI	GGATG	2 cut(s)	275, 638
FriOI	GRGCYC	3 cut(s)	49, 193, 684
Fsp4HI	GCNGC	9 cut(s)	79, 87, 107, 110, 113, 116, 137, 519, 564
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	2 cut(s)	96, 213
GluI	GCNGC	9 cut(s)	79, 87, 107, 110, 113, 116, 137, 519, 564
HaeIII	GGCC	5 cut(s)	69, 185, 302, 682, 745
HapII	CCGG	4 cut(s)	66, 174, 186, 437
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	2 cut(s)	97, 214
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	5 cut(s)	65, 74, 256, 466, 605
Hin6I	GCGC	2 cut(s)	95, 212
HinP1I	GCGC	2 cut(s)	95, 212
HinfI	GANTC	2 cut(s)	421, 752
HpaII	CCGG	4 cut(s)	66, 174, 186, 437
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	5 cut(s)	51, 147, 152, 262, 570
Hpy188III	TCNNGA	3 cut(s)	306, 340, 792
Hpy8I	GTNNAC	1 cut(s)	482
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	4 cut(s)	157, 433, 706, 760
HpyCH4V	TGCA	9 cut(s)	4, 136, 256, 269, 427, 521, 563, 610, 800
HpyF3I	CTNAG	4 cut(s)	48, 144, 198, 567
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	5 cut(s)	65, 74, 256, 466, 605
HspAI	GCGC	2 cut(s)	95, 212
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	147, 541, 722
LmnI	GCTCC	4 cut(s)	44, 188, 659, 783
Lsp1109I	GCAGC	5 cut(s)	121, 127, 148, 505, 575
LweI	GCATC	2 cut(s)	172, 809
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	99, 355
MalI	GATC	3 cut(s)	149, 543, 724
MboI	GATC	3 cut(s)	147, 541, 722
MboII	GAAGA	4 cut(s)	158, 332, 365, 375
MflI	RGATCY	2 cut(s)	541, 722
MhlI	GDGCHC	3 cut(s)	49, 193, 684
MluCI	AATT	4 cut(s)	309, 391, 448, 795
MroNI	GCCGGC	1 cut(s)	65
MseI	TTAA	1 cut(s)	719
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	4 cut(s)	66, 174, 186, 437
MspR9I	CCNGG	2 cut(s)	438, 454
MvaI	CCWGG	1 cut(s)	454
MvnI	CGCG	1 cut(s)	95
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	438
NcoI	CCATGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	3 cut(s)	147, 541, 722
NgoMIV	GCCGGC	1 cut(s)	65
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	5 cut(s)	65, 74, 256, 466, 605
NlaIV	GGNNCC	2 cut(s)	682, 785
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	3 cut(s)	65, 256, 605
PaeI	GCATGC	2 cut(s)	256, 605
PceI	AGGCCT	2 cut(s)	302, 745
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	421, 752
PfoI	TCCNGGA	1 cut(s)	436
PkrI	GCNGC	9 cut(s)	80, 88, 108, 111, 114, 117, 138, 520, 565
Psp124BI	GAGCTC	2 cut(s)	49, 193
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	682, 785
PspOMI	GGGCCC	1 cut(s)	680
PspPI	GGNCC	2 cut(s)	680, 681
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	541, 722
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	5 cut(s)	208, 246, 469, 483, 584
RsaNI	GTAC	5 cut(s)	207, 245, 468, 482, 583
RseI	CAYNNNNRTG	1 cut(s)	261
SacI	GAGCTC	2 cut(s)	49, 193
SaqAI	TTAA	1 cut(s)	719
SatI	GCNGC	9 cut(s)	79, 87, 107, 110, 113, 116, 137, 519, 564
Sau3AI	GATC	3 cut(s)	147, 541, 722
Sau96I	GGNCC	2 cut(s)	680, 681
ScrFI	CCNGG	2 cut(s)	438, 454
SduI	GDGCHC	3 cut(s)	49, 193, 684
SfaNI	GCATC	2 cut(s)	172, 809
SfcI	CTRYAG	2 cut(s)	134, 586
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
SphI	GCATGC	2 cut(s)	256, 605
Sse9I	AATT	4 cut(s)	309, 391, 448, 795
SseBI	AGGCCT	2 cut(s)	302, 745
SsiI	CCGC	4 cut(s)	78, 87, 107, 113
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	2 cut(s)	49, 193
StuI	AGGCCT	2 cut(s)	302, 745
StyD4I	CCNGG	2 cut(s)	436, 452
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	4 cut(s)	157, 433, 706, 760
TaqI	TCGA	1 cut(s)	125
TasI	AATT	4 cut(s)	309, 391, 448, 795
TatI	WGTACW	4 cut(s)	206, 467, 481, 582
TauI	GCSGC	4 cut(s)	81, 89, 109, 115
TfiI	GAWTC	2 cut(s)	421, 752
Tru1I	TTAA	1 cut(s)	719
Tru9I	TTAA	1 cut(s)	719
TscAI	CASTG	2 cut(s)	108, 162
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	5 cut(s)	109, 115, 136, 518, 563
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	390
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	108, 162
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	3 cut(s)	65, 256, 605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.