Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004617

Physical Location & Seq

Genomic Coordinates Reverse (-)

46219648 .. 46225385

Gene Structure 5738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0344300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGAGAACCCAGAAGCAAATCAGCTTCCTGAAGTGGATTCATTGCCAGATGGATTTGTTGAGAGCTCGTCAGAGCCACTGGCTCCTCCAACTCCCACCTTTGAACAAGAGAAGCCTCCGGGCAATCACGAGGATGATAATGCCTCGGAGATGGATCGTTCGAAGGAGCGTGTGGATGAATTGGGTGCAAATGAGTTGCAAACGAGCCAGGATAAGGGAGAGAAGACACCCAAACTGAGAACCTTTCCTGTTCCATTATCGGAAACTGATAGTTTTGATGCTTCAGTAGAGTCAGTTGAAGTTCCGAAGAAGGCTTCTACGGAGCAGACAGCAGAAGGTTCAGTAGTTGTGCCTGGGTCGGTTGATTCTGCGTCTGAGGCTGCAATTCAGGCATCTGGTTGCAGTGAAGTAAAGGAACAAGTTGAAGCAAAATGTGAAAGTTCAGAGAGACCAATTGAAGTAGGCTTGGATGCACCGACAACCAATCTAAAGGAAATATCTGCTTCGGAGAGTGTTGAAAAAACCAAAAAACCAGATACAACTGAAACCAAACGGAAAAATCCAAAGCGGACCTTTAAATCAGAGAAGGAGTTTATAGAGTTCACTTTGAAGTATCAACAAGTTCTTGCAGAGAGAGATGGAGCCATTGCTGTTCGAGATAAGCTTGAGTCGTTGTGTAGAGAGTTACAACGCCAGAACAAAATGCTAATGGATGAATGTAGACGGGTGTCAACAGAGGGCCAAAACTTGAGATTAGAGTTATCAACCAAGTTCCAAGATGCAATAAAGGATGTGAGCAAAAAGCTAGATGAACAGAAGGATGAATGTATCTCTCAGCTAAAGGAGAATGAAATGTTAAGTACCAAACTACAGCAGCTCACCCATCAGTATGCTCATTCTGAACAGCAATATGAAACGAAGTTGAAGCAAAAATCATTGGAGCTTCAAATTGCTGATTTGAAGATTAGGCAGCATGAAGAGAAATTAATCCAGGAACAGTCCCAGATGAAATTATATGCAGAACAGGTGTCACAATTACTATCAACTGAAAAGAATTTGCGGTTGCAGTTGACGGCTGATGGGGAAAAATTCCAACAATTCCAGGATGCATTGTTGAAAAGCAATGAAGTTTTCGAAACATTCAAACAGGAGATTGAAAAGATGGCAAAGTCTATCAAGGATCTCAAGAAGGAAAATGTGTTCTTGAAGAGCAAATGTGATAAGACAGATGTTACTCTTATAGAACTCGTAGATGAGCGTGAGCGGTTGAAGAAACAGTTAGAGAAAACAAAGAATCAGAAAGAAAAGCTCGAATCCTTATGCCGGTCACTTCAAGCAGAAAGGAAACAGAACTCTACCGAGAGCAACACCTCCGATGCACTTCCACTTTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

465

Amino Acids

52.81

Weight (kDa)

5.05

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Taxilin	PF09728	174 - 447	1.5e-74	Myosin-like coiled-coil protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55640 AT3G55640 AT3G55640 AT3G55640
fragaria_vesca	FvH4_7g23560 FvH4_7g23560 FvH4_7g23560 FvH4_7g23560
malus_domestica	MD01G1141400.v1.1 MD07G1205500.v1.1
prunus_persica	Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1
pyrus_communis	pycom01g16170 pycom07g19210
rosa_chinensis	RchiOBHm_Chr1g0368721
rosa_laevigata	RLG00000027194
rosa_multiflora	Rmu_sc0001791.1_g000016
rosa_roxburghii	Rroxscaffold_4G00288330
rosa_rugosa	Rorug01G0344200 Rorug01G0344200 Rorug01G0344200 Rorug01G0344300 Rorug01G0344400
rosa_samantha	Rh1AG351500 Rh1BG315200 Rh1DG346700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1264
AccI	GTMKAC	1 cut(s)	721
AciI	CCGC	3 cut(s)	568, 1060, 1264
AclWI	GGATC	2 cut(s)	162, 1188
AcsI	RAATTY	2 cut(s)	1054, 1088
AcuI	CTGAAG	2 cut(s)	51, 267
AfaI	GTAC	1 cut(s)	862
AfiI	CCNNNNNNNGG	2 cut(s)	214, 1323
AjnI	CCWGG	4 cut(s)	207, 352, 990, 1101
AloI	GAACNNNNNNTCC	2 cut(s)	1184, 1216
AluBI	AGCT	8 cut(s)	25, 66, 664, 805, 838, 877, 943, 1309
AluI	AGCT	8 cut(s)	25, 66, 664, 805, 838, 877, 943, 1309
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	2 cut(s)	162, 1188
AoxI	GGCC	1 cut(s)	739
ApeKI	GCWGC	3 cut(s)	380, 874, 970
ApoI	RAATTY	2 cut(s)	1054, 1088
AseI	ATTAAT	1 cut(s)	986
AspS9I	GGNCC	2 cut(s)	570, 739
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	871
AsuII	TTCGAA	2 cut(s)	161, 1134
AvaII	GGWCC	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	367, 886, 982
BccI	CCATC	6 cut(s)	44, 145, 632, 891, 1073, 1156
BceAI	ACGGC	1 cut(s)	1089
BciT130I	CCWGG	4 cut(s)	209, 354, 992, 1103
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	1 cut(s)	806
BfmI	CTRYAG	1 cut(s)	869
BisI	GCNGC	3 cut(s)	381, 875, 971
BlsI	GCNGC	3 cut(s)	382, 876, 972
Bme1390I	CCNGG	5 cut(s)	120, 209, 354, 992, 1103
Bme18I	GGWCC	1 cut(s)	570
BmgT120I	GGNCC	2 cut(s)	570, 739
BmiI	GGNNCC	2 cut(s)	84, 643
BmrFI	CCNGG	5 cut(s)	120, 209, 354, 992, 1103
BmsI	GCATC	6 cut(s)	268, 401, 460, 769, 1096, 1366
BoxI	GACNNNNGTC	1 cut(s)	727
BpiI	GAAGAC	1 cut(s)	230
Bpu14I	TTCGAA	2 cut(s)	161, 1134
BpuEI	CTTGAG	3 cut(s)	686, 769, 1169
BpuMI	CCSGG	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	144, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 1323
Bse118I	RCCGGY	1 cut(s)	1323
Bse1I	ACTGG	1 cut(s)	84
Bse3DI	GCAATG	3 cut(s)	41, 645, 1129
BseBI	CCWGG	4 cut(s)	209, 354, 992, 1103
BseDI	CCNNGG	2 cut(s)	144, 353
BseGI	GGATG	7 cut(s)	139, 181, 475, 718, 796, 826, 1111
BseLI	CCNNNNNNNGG	2 cut(s)	214, 1323
BseMI	GCAATG	3 cut(s)	41, 645, 1129
BseMII	CTCAG	3 cut(s)	227, 366, 848
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	3 cut(s)	367, 886, 982
BshFI	GGCC	1 cut(s)	741
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	119, 1324
BslFI	GGGAC	1 cut(s)	985
BslI	CCNNNNNNNGG	2 cut(s)	214, 1323
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	985
BsnI	GGCC	1 cut(s)	741
Bso31I	GGTCTC	1 cut(s)	442
Bsp119I	TTCGAA	2 cut(s)	161, 1134
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	154, 1180
BspACI	CCGC	3 cut(s)	568, 1060, 1264
BspANI	GGCC	1 cut(s)	741
BspCNI	CTCAG	3 cut(s)	228, 367, 847
BspHI	TCATGA	1 cut(s)	1394
BspLI	GGNNCC	2 cut(s)	84, 643
BspPI	GGATC	2 cut(s)	162, 1188
BspQI	GCTCTTC	1 cut(s)	1202
BspT104I	TTCGAA	2 cut(s)	161, 1134
BspTNI	GGTCTC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	1264
BsrDI	GCAATG	3 cut(s)	41, 645, 1129
BsrFI	RCCGGY	1 cut(s)	1323
BsrI	ACTGG	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	1323
BssECI	CCNNGG	2 cut(s)	144, 353
BssMI	GATC	2 cut(s)	154, 1180
BssSI	CACGAG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	128
Bst2UI	CCWGG	4 cut(s)	209, 354, 992, 1103
Bst4CI	ACNGT	2 cut(s)	999, 1278
Bst6I	CTCTTC	2 cut(s)	972, 1202
BstBI	TTCGAA	2 cut(s)	161, 1134
BstDEI	CTNAG	3 cut(s)	236, 375, 834
BstF5I	GGATG	7 cut(s)	139, 181, 475, 718, 796, 826, 1111
BstKTI	GATC	2 cut(s)	157, 1183
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	2 cut(s)	154, 1180
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 389
BstNI	CCWGG	4 cut(s)	209, 354, 992, 1103
BstPAI	GACNNNNGTC	1 cut(s)	727
BstSCI	CCNGG	5 cut(s)	118, 207, 352, 990, 1101
BstSFI	CTRYAG	1 cut(s)	869
BstV1I	GCAGC	3 cut(s)	367, 886, 982
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	1180
BstYI	RGATCY	1 cut(s)	1180
BsuRI	GGCC	1 cut(s)	741
BtsCI	GGATG	7 cut(s)	139, 181, 475, 718, 796, 826, 1111
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	77, 409
CciI	TCATGA	1 cut(s)	1394
Cfr10I	RCCGGY	1 cut(s)	1323
Cfr13I	GGNCC	2 cut(s)	570, 739
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	861
CviAII	CATG	2 cut(s)	974, 1395
CviQI	GTAC	1 cut(s)	861
DdeI	CTNAG	3 cut(s)	236, 375, 834
DpnI	GATC	2 cut(s)	156, 1182
DpnII	GATC	2 cut(s)	154, 1180
DraI	TTTAAA	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	972, 1202
EarI	CTCTTC	2 cut(s)	972, 1202
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	570
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	51, 267
EcoICRI	GAGCTC	1 cut(s)	66
EcoRII	CCWGG	4 cut(s)	207, 352, 990, 1101
EcoT22I	ATGCAT	1 cut(s)	1111
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	2 cut(s)	977, 1398
FaiI	YATR	9 cut(s)	596, 891, 912, 975, 1015, 1017, 1241, 1321, 1396
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	2 cut(s)	973, 1394
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	381, 875, 971
FokI	GGATG	7 cut(s)	146, 188, 482, 725, 803, 833, 1118
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	381, 875, 971
FspBI	CTAG	1 cut(s)	806
GluI	GCNGC	3 cut(s)	381, 875, 971
HaeIII	GGCC	1 cut(s)	741
HapII	CCGG	2 cut(s)	119, 1324
HgaI	GACGC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	977, 1398
HincII	GTYRAC	2 cut(s)	732, 1071
HindII	GTYRAC	2 cut(s)	732, 1071
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	6 cut(s)	38, 290, 365, 668, 1294, 1313
HpaII	CCGG	2 cut(s)	119, 1324
HphI	GGTGA	1 cut(s)	871
Hpy166II	GTNNAC	4 cut(s)	603, 722, 732, 1071
Hpy188III	TCNNGA	6 cut(s)	29, 128, 656, 1186, 1204, 1395
Hpy8I	GTNNAC	4 cut(s)	603, 722, 732, 1071
HpyAV	CCTTC	6 cut(s)	157, 304, 329, 580, 811, 1183
HpyCH4III	ACNGT	2 cut(s)	999, 1278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 389
HpyF3I	CTNAG	3 cut(s)	236, 375, 834
Hsp92II	CATG	2 cut(s)	977, 1398
Kzo9I	GATC	2 cut(s)	154, 1180
LguI	GCTCTTC	1 cut(s)	1202
LmnI	GCTCC	5 cut(s)	88, 166, 322, 641, 940
Lsp1109I	GCAGC	3 cut(s)	367, 886, 982
LweI	GCATC	6 cut(s)	268, 401, 460, 769, 1096, 1366
MaeI	CTAG	1 cut(s)	806
MaeIII	GTNAC	4 cut(s)	684, 1029, 1231, 1326
MalI	GATC	2 cut(s)	156, 1182
MbiI	CCGCTC	1 cut(s)	1264
MboI	GATC	2 cut(s)	154, 1180
MboII	GAAGA	6 cut(s)	235, 319, 973, 989, 1219, 1282
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	1 cut(s)	1180
MhlI	GDGCHC	1 cut(s)	68
MlyI	GAGTC	2 cut(s)	299, 677
MmeI	TCCRAC	2 cut(s)	113, 1117
MnlI	CCTC	7 cut(s)	96, 124, 126, 154, 370, 730, 1381
Mph1103I	ATGCAT	1 cut(s)	1111
MseI	TTAA	3 cut(s)	576, 857, 986
MslI	CAYNNNNRTG	2 cut(s)	132, 888
MspI	CCGG	2 cut(s)	119, 1324
MspR9I	CCNGG	5 cut(s)	120, 209, 354, 992, 1103
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	4 cut(s)	209, 354, 992, 1103
MwoI	GCNNNNNNNGC	2 cut(s)	377, 389
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	154, 1180
NlaIII	CATG	2 cut(s)	977, 1398
NlaIV	GGNNCC	2 cut(s)	84, 643
NmuCI	GTSAC	2 cut(s)	1029, 1326
NsiI	ATGCAT	1 cut(s)	1111
NspV	TTCGAA	2 cut(s)	161, 1134
PagI	TCATGA	1 cut(s)	1394
PciSI	GCTCTTC	1 cut(s)	1202
PfeI	GAWTC	4 cut(s)	38, 365, 1294, 1313
PfoI	TCCNGGA	2 cut(s)	990, 1101
PkrI	GCNGC	3 cut(s)	382, 876, 972
PleI	GAGTC	2 cut(s)	298, 676
PpsI	GAGTC	2 cut(s)	298, 676
PshAI	GACNNNNGTC	1 cut(s)	727
PshBI	ATTAAT	1 cut(s)	986
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	4 cut(s)	207, 352, 990, 1101
PspGI	CCWGG	4 cut(s)	207, 352, 990, 1101
PspN4I	GGNNCC	2 cut(s)	84, 643
PspPI	GGNCC	2 cut(s)	570, 739
PsuI	RGATCY	1 cut(s)	1180
RsaI	GTAC	1 cut(s)	862
RsaNI	GTAC	1 cut(s)	861
RseI	CAYNNNNRTG	2 cut(s)	132, 888
SacI	GAGCTC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	1202
SaqAI	TTAA	3 cut(s)	576, 857, 986
SatI	GCNGC	3 cut(s)	381, 875, 971
Sau3AI	GATC	2 cut(s)	154, 1180
Sau96I	GGNCC	2 cut(s)	570, 739
SchI	GAGTC	2 cut(s)	299, 677
ScrFI	CCNGG	5 cut(s)	120, 209, 354, 992, 1103
SduI	GDGCHC	1 cut(s)	68
SfaNI	GCATC	6 cut(s)	268, 401, 460, 769, 1096, 1366
SfcI	CTRYAG	1 cut(s)	869
SfuI	TTCGAA	2 cut(s)	161, 1134
SinI	GGWCC	1 cut(s)	570
SmiMI	CAYNNNNRTG	2 cut(s)	132, 888
SmlI	CTYRAG	3 cut(s)	665, 748, 1184
SmoI	CTYRAG	3 cut(s)	665, 748, 1184
SsiI	CCGC	3 cut(s)	568, 1060, 1264
SspMI	CTAG	1 cut(s)	806
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	5 cut(s)	118, 207, 352, 990, 1101
TaaI	ACNGT	2 cut(s)	999, 1278
TaqI	TCGA	4 cut(s)	161, 655, 1134, 1311
TfiI	GAWTC	4 cut(s)	38, 365, 1294, 1313
Tru1I	TTAA	3 cut(s)	576, 857, 986
Tru9I	TTAA	3 cut(s)	576, 857, 986
TscAI	CASTG	2 cut(s)	84, 409
TseFI	GTSAC	2 cut(s)	1029, 1326
TseI	GCWGC	3 cut(s)	380, 874, 970
Tsp45I	GTSAC	2 cut(s)	1029, 1326
TspGWI	ACGGA	2 cut(s)	335, 568
TspRI	CASTG	2 cut(s)	84, 409
VpaK11BI	GGWCC	1 cut(s)	570
VspI	ATTAAT	1 cut(s)	986
XapI	RAATTY	2 cut(s)	1054, 1088
XmiI	GTMKAC	1 cut(s)	721
XspI	CTAG	1 cut(s)	806
Zsp2I	ATGCAT	1 cut(s)	1111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.