Rroxscaffold_4G00288330

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
9184309 .. 9188460
4152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288330.1

Sequence Viewer

Length: 1056 bp
ATGCAGACGGAGGCGAGAGTTGGAGTGGTGGTGGAAGGAGGAGCTCAGGGAGCTTTACATGCTGGCCATGGAGGCGGCGTCGCCGCAGTAGCGCAATCACTGCCGCAGCCGCAGCCGCAGCCGCAGCCGAAGTCTCTGCAGCAGTCTCAGATCGGAACACTGTCGCAGCTTCTCGCCGGAGGCGTGGCCGGAGCTCTAGCTAAGACTTGTACTGCGCCTCTTGCTCGGCTTACTATTCTCTTTCAGATACAAGGAATGCACTCAGATGTTACAACTATGAGAAAAGCTAGCATATGGCGTGAGGCCTCAAGAATTGCTGGTGAAGAGGGATTTAGGGCTTTCTGGAAAGGAAATCTGGTTACGATTGCTCATCGGCTTCCTTATTCTGCTGTCAATTTCTCTTCATATGAGCAGTATAAAAAGATTCTACACAAAGTTCCGGGACTGAAAAATTCCAGGGATAACATGAGTACAGACATTTGTGTACATTTTGTGGCTGGAGGTTTGGCAGGAATAACAGCTGCAACAGCCACATATCCTTTAGATCTTGTAAGGACACGCCTTGCAGCTCAGACAAATGTAATGTACTACAGAGGCATTGGGCATGCTTTGCGAACTATTAGCAGGGATGAGGGTATCTTTGGTCTCTATAAAGGACTTGGAGCAACCCTGTTGGGTGTCGGGCCCAGTATAGCTATCAGTTTTGCAGTATATGAGACATTAAGATCTTATTGGCAGGCACAGAGGCCTGATGATTCTACTGCGCTGGTTAGTCTTGCTTGTGGGGGCCTTTCAGGAATTGCATCATCAACAGCAACATTTCCATTGGATCTCGTGAGGCGGCGCAAACAGTTGGAAGGGGCTGGTGGCCGAGCGCGTGTCTACACAACAGGTCTTTTCGGTACATTTAAGCACATATTCAGGACAGAAGGCTTGCGCGGCTTATATAGAGGAATTCTACCGGAATACTACAAAGTGGTACCTGGTGTCGGCATTTGTTATATGACATACGAGTCACTGAAGATACTTCTTGCAGATGTTAGTGCTACTATATAG

Protein Analysis

351

Amino Acids

37.59

Weight (kDa)

9.77

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 51 - 145 8.6e-22 Mitochondrial carrier protein
Mito_carr PF00153 161 - 246 2.7e-25 Mitochondrial carrier protein
Mito_carr PF00153 253 - 345 8.1e-23 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1012
Acc65I GGTACC 1 cut(s) 979
AccB1I GGYRCC 1 cut(s) 979
AccI GTMKAC 1 cut(s) 882
AccII CGCG 2 cut(s) 877, 939
AciI CCGC 8 cut(s) 75, 84, 104, 110, 116, 122, 841, 939
AclWI GGATC 1 cut(s) 837
AcoI YGGCCR 3 cut(s) 64, 186, 868
AcsI RAATTY 2 cut(s) 451, 954
AcuI CTGAAG 1 cut(s) 1040
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 6 cut(s) 211, 472, 486, 587, 904, 981
AfiI CCNNNNNNNGG 1 cut(s) 989
AjnI CCWGG 2 cut(s) 455, 982
AluBI AGCT 9 cut(s) 44, 53, 169, 194, 200, 287, 521, 569, 695
AluI AGCT 9 cut(s) 44, 53, 169, 194, 200, 287, 521, 569, 695
Alw21I GWGCWC 2 cut(s) 46, 196
Alw26I GTCTC 4 cut(s) 138, 150, 650, 710
AlwI GGATC 1 cut(s) 837
AoxI GGCC 7 cut(s) 64, 186, 303, 683, 746, 787, 868
ApaI GGGCCC 1 cut(s) 687
ApeKI GCWGC 8 cut(s) 106, 112, 118, 124, 139, 166, 521, 566
ApoI RAATTY 2 cut(s) 451, 954
Asp718I GGTACC 1 cut(s) 979
AspLEI GCGC 6 cut(s) 94, 217, 766, 846, 877, 939
AspS9I GGNCC 3 cut(s) 683, 684, 787
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 1 cut(s) 332
AsuNHI GCTAGC 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 687
BalI TGGCCA 1 cut(s) 66
BanI GGYRCC 1 cut(s) 979
BanII GRGCYC 3 cut(s) 46, 196, 687
BauI CACGAG 1 cut(s) 833
Bbv12I GWGCWC 2 cut(s) 46, 196
BbvI GCAGC 8 cut(s) 118, 124, 130, 136, 151, 178, 508, 578
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 2 cut(s) 457, 984
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 4 cut(s) 138, 150, 650, 710
BfaI CTAG 2 cut(s) 197, 288
BfmI CTRYAG 2 cut(s) 137, 589
BglI GCCNNNNNGGC 1 cut(s) 72
BglII AGATCT 2 cut(s) 544, 725
Bme1390I CCNGG 3 cut(s) 441, 457, 984
BmgT120I GGNCC 3 cut(s) 683, 684, 787
BmiI GGNNCC 3 cut(s) 685, 788, 981
BmrFI CCNGG 3 cut(s) 441, 457, 984
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 1 cut(s) 812
BmtI GCTAGC 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 292
BpuMI CCSGG 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 2 cut(s) 67, 456
BsaWI WCCGGW 1 cut(s) 961
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 63, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 989
Bse1I ACTGG 1 cut(s) 687
BseBI CCWGG 2 cut(s) 457, 984
BseDI CCNNGG 2 cut(s) 67, 456
BseGI GGATG 1 cut(s) 634
BseLI CCNNNNNNNGG 1 cut(s) 989
BseMII CTCAG 4 cut(s) 59, 161, 276, 584
BseNI ACTGG 1 cut(s) 687
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 687
BseXI GCAGC 8 cut(s) 118, 124, 130, 136, 151, 178, 508, 578
Bsh1236I CGCG 2 cut(s) 877, 939
BshFI GGCC 7 cut(s) 66, 188, 305, 685, 748, 789, 870
BshNI GGYRCC 1 cut(s) 979
BsiHKAI GWGCWC 2 cut(s) 46, 196
BsiSI CCGG 4 cut(s) 177, 189, 440, 962
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 989
BsmAI GTCTC 4 cut(s) 138, 150, 650, 710
BsmFI GGGAC 1 cut(s) 456
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 7 cut(s) 66, 188, 305, 685, 748, 789, 870
Bso31I GGTCTC 1 cut(s) 650
Bsp120I GGGCCC 1 cut(s) 683
Bsp1286I GDGCHC 3 cut(s) 46, 196, 687
Bsp1407I TGTACA 1 cut(s) 484
Bsp143I GATC 4 cut(s) 150, 544, 725, 829
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 8 cut(s) 75, 84, 104, 110, 116, 122, 841, 939
BspANI GGCC 7 cut(s) 66, 188, 305, 685, 748, 789, 870
BspCNI CTCAG 4 cut(s) 58, 160, 275, 583
BspFNI CGCG 2 cut(s) 877, 939
BspLI GGNNCC 3 cut(s) 685, 788, 981
BspMAI CTGCAG 1 cut(s) 141
BspOI GCTAGC 1 cut(s) 291
BspPI GGATC 1 cut(s) 837
BspT107I GGYRCC 1 cut(s) 979
BspTNI GGTCTC 1 cut(s) 650
BsrGI TGTACA 1 cut(s) 484
BsrI ACTGG 1 cut(s) 687
BssECI CCNNGG 2 cut(s) 67, 456
BssMI GATC 4 cut(s) 150, 544, 725, 829
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 833
BssT1I CCWWGG 1 cut(s) 67
Bst2BI CACGAG 1 cut(s) 833
Bst2UI CCWGG 2 cut(s) 457, 984
Bst4CI ACNGT 2 cut(s) 162, 852
Bst6I CTCTTC 2 cut(s) 318, 406
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 2 cut(s) 100, 610
BstAUI TGTACA 1 cut(s) 484
BstC8I GCNNGC 5 cut(s) 64, 289, 606, 738, 935
BstDEI CTNAG 5 cut(s) 45, 147, 201, 262, 570
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 634
BstFNI CGCG 2 cut(s) 877, 939
BstHHI GCGC 6 cut(s) 94, 217, 766, 846, 877, 939
BstKTI GATC 4 cut(s) 153, 547, 728, 832
BstMAI GTCTC 4 cut(s) 138, 150, 650, 710
BstMBI GATC 4 cut(s) 150, 544, 725, 829
BstNI CCWGG 2 cut(s) 457, 984
BstNSI RCATGY 2 cut(s) 62, 608
BstSCI CCNGG 3 cut(s) 439, 455, 982
BstSFI CTRYAG 2 cut(s) 137, 589
BstSLI GKGCMC 1 cut(s) 687
BstUI CGCG 2 cut(s) 877, 939
BstV1I GCAGC 8 cut(s) 118, 124, 130, 136, 151, 178, 508, 578
BstX2I RGATCY 3 cut(s) 544, 725, 829
BstYI RGATCY 3 cut(s) 544, 725, 829
BsuRI GGCC 7 cut(s) 66, 188, 305, 685, 748, 789, 870
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 634
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 3 cut(s) 98, 158, 1016
Cac8I GCNNGC 5 cut(s) 64, 289, 606, 738, 935
CfoI GCGC 6 cut(s) 94, 217, 766, 846, 877, 939
Cfr13I GGNCC 3 cut(s) 683, 684, 787
CseI GACGC 1 cut(s) 67
CsiI ACCWGGT 1 cut(s) 982
Csp6I GTAC 6 cut(s) 210, 471, 485, 586, 903, 980
CviAII CATG 4 cut(s) 59, 68, 466, 605
CviQI GTAC 6 cut(s) 210, 471, 485, 586, 903, 980
DdeI CTNAG 5 cut(s) 45, 147, 201, 262, 570
DpnI GATC 4 cut(s) 152, 546, 727, 831
DpnII GATC 4 cut(s) 150, 544, 725, 829
DrdI GACNNNNNNGTC 1 cut(s) 1012
DseDI GACNNNNNNGTC 1 cut(s) 1012
EaeI YGGCCR 3 cut(s) 64, 186, 868
Eam1104I CTCTTC 2 cut(s) 318, 406
EarI CTCTTC 2 cut(s) 318, 406
Ecl136II GAGCTC 2 cut(s) 44, 194
Eco130I CCWWGG 1 cut(s) 67
Eco147I AGGCCT 2 cut(s) 305, 748
Eco24I GRGCYC 3 cut(s) 46, 196, 687
Eco31I GGTCTC 1 cut(s) 650
Eco53kI GAGCTC 2 cut(s) 44, 194
Eco57I CTGAAG 1 cut(s) 1040
EcoICRI GAGCTC 2 cut(s) 44, 194
EcoO109I RGGNCCY 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 954
EcoRII CCWGG 2 cut(s) 455, 982
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 3 cut(s) 46, 196, 687
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 4 cut(s) 62, 71, 469, 608
FaqI GGGAC 1 cut(s) 456
FatI CATG 4 cut(s) 58, 67, 465, 604
FauNDI CATATG 2 cut(s) 293, 406
FblI GTMKAC 1 cut(s) 882
FokI GGATG 1 cut(s) 641
FriOI GRGCYC 3 cut(s) 46, 196, 687
FspBI CTAG 2 cut(s) 197, 288
GlaI GCGC 6 cut(s) 93, 216, 765, 845, 876, 938
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 7 cut(s) 66, 188, 305, 685, 748, 789, 870
HapII CCGG 4 cut(s) 177, 189, 440, 962
HgaI GACGC 1 cut(s) 67
HhaI GCGC 6 cut(s) 94, 217, 766, 846, 877, 939
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 4 cut(s) 62, 71, 469, 608
Hin6I GCGC 6 cut(s) 92, 215, 764, 844, 875, 937
HinP1I GCGC 6 cut(s) 92, 215, 764, 844, 875, 937
HinfI GANTC 3 cut(s) 424, 755, 1013
HpaII CCGG 4 cut(s) 177, 189, 440, 962
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 485, 883
Hpy188I TCNGA 5 cut(s) 150, 155, 246, 265, 573
Hpy188III TCNNGA 5 cut(s) 309, 343, 795, 835, 922
Hpy8I GTNNAC 2 cut(s) 485, 883
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 29, 851, 923
HpyCH4III ACNGT 2 cut(s) 162, 852
HpyCH4V TGCA 8 cut(s) 4, 139, 259, 524, 566, 707, 803, 1034
HpyF3I CTNAG 5 cut(s) 45, 147, 201, 262, 570
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 4 cut(s) 62, 71, 469, 608
HspAI GCGC 6 cut(s) 92, 215, 764, 844, 875, 937
KpnI GGTACC 1 cut(s) 983
Kzo9I GATC 4 cut(s) 150, 544, 725, 829
LmnI GCTCC 4 cut(s) 41, 50, 191, 662
Lsp1109I GCAGC 8 cut(s) 118, 124, 130, 136, 151, 178, 508, 578
LweI GCATC 1 cut(s) 812
MabI ACCWGGT 1 cut(s) 982
MaeI CTAG 2 cut(s) 197, 288
MaeIII GTNAC 3 cut(s) 268, 358, 1014
MalI GATC 4 cut(s) 152, 546, 727, 831
MboI GATC 4 cut(s) 150, 544, 725, 829
MboII GAAGA 3 cut(s) 335, 393, 1033
MflI RGATCY 3 cut(s) 544, 725, 829
MhlI GDGCHC 3 cut(s) 46, 196, 687
MlsI TGGCCA 1 cut(s) 66
MluCI AATT 5 cut(s) 312, 394, 451, 798, 954
MluNI TGGCCA 1 cut(s) 66
MlyI GAGTC 1 cut(s) 1022
MmeI TCCRAC 1 cut(s) 834
Mox20I TGGCCA 1 cut(s) 66
MscI TGGCCA 1 cut(s) 66
MseI TTAA 2 cut(s) 722, 909
MslI CAYNNNNRTG 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 4 cut(s) 177, 189, 440, 962
MspR9I CCNGG 3 cut(s) 441, 457, 984
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 2 cut(s) 457, 984
MvnI CGCG 2 cut(s) 877, 939
NciI CCSGG 1 cut(s) 441
NcoI CCATGG 1 cut(s) 67
NdeI CATATG 2 cut(s) 293, 406
NdeII GATC 4 cut(s) 150, 544, 725, 829
NheI GCTAGC 1 cut(s) 287
NlaIII CATG 4 cut(s) 62, 71, 469, 608
NlaIV GGNNCC 3 cut(s) 685, 788, 981
NmeAIII GCCGAG 2 cut(s) 205, 896
NmuCI GTSAC 1 cut(s) 1014
NspI RCATGY 2 cut(s) 62, 608
PaeI GCATGC 1 cut(s) 608
PceI AGGCCT 2 cut(s) 305, 748
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 424, 755
PfoI TCCNGGA 1 cut(s) 439
PleI GAGTC 1 cut(s) 1021
PpsI GAGTC 1 cut(s) 1021
Psp124BI GAGCTC 2 cut(s) 46, 196
Psp6I CCWGG 2 cut(s) 455, 982
PspGI CCWGG 2 cut(s) 455, 982
PspN4I GGNNCC 3 cut(s) 685, 788, 981
PspOMI GGGCCC 1 cut(s) 683
PspPI GGNCC 3 cut(s) 683, 684, 787
PstI CTGCAG 1 cut(s) 141
PsuI RGATCY 3 cut(s) 544, 725, 829
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 6 cut(s) 211, 472, 486, 587, 904, 981
RsaNI GTAC 6 cut(s) 210, 471, 485, 586, 903, 980
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 2 cut(s) 46, 196
SaqAI TTAA 2 cut(s) 722, 909
Sau3AI GATC 4 cut(s) 150, 544, 725, 829
Sau96I GGNCC 3 cut(s) 683, 684, 787
SchI GAGTC 1 cut(s) 1022
ScrFI CCNGG 3 cut(s) 441, 457, 984
SduI GDGCHC 3 cut(s) 46, 196, 687
SexAI ACCWGGT 1 cut(s) 982
SfaNI GCATC 1 cut(s) 812
SfcI CTRYAG 2 cut(s) 137, 589
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
SphI GCATGC 1 cut(s) 608
Sse9I AATT 5 cut(s) 312, 394, 451, 798, 954
SseBI AGGCCT 2 cut(s) 305, 748
SsiI CCGC 8 cut(s) 75, 84, 104, 110, 116, 122, 841, 939
SspMI CTAG 2 cut(s) 197, 288
SstI GAGCTC 2 cut(s) 46, 196
StuI AGGCCT 2 cut(s) 305, 748
StyD4I CCNGG 3 cut(s) 439, 455, 982
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 162, 852
TasI AATT 5 cut(s) 312, 394, 451, 798, 954
TatI WGTACW 4 cut(s) 209, 470, 484, 585
TauI GCSGC 8 cut(s) 78, 86, 106, 112, 118, 124, 844, 942
TfiI GAWTC 2 cut(s) 424, 755
Tru1I TTAA 2 cut(s) 722, 909
Tru9I TTAA 2 cut(s) 722, 909
TscAI CASTG 3 cut(s) 105, 165, 1023
TseFI GTSAC 1 cut(s) 1014
TseI GCWGC 8 cut(s) 106, 112, 118, 124, 139, 166, 521, 566
Tsp45I GTSAC 1 cut(s) 1014
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 3 cut(s) 105, 165, 1023
XapI RAATTY 2 cut(s) 451, 954
XceI RCATGY 2 cut(s) 62, 608
XmiI GTMKAC 1 cut(s) 882
XspI CTAG 2 cut(s) 197, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.