Rorug01G0344400

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004617
Physical Location & Seq
Reverse (-)
46244305 .. 46244625
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0344400.1

Sequence Viewer

Length: 321 bp
ATGGAGAAGGGAAGGTTAATCTGTCTCAATGACCACTGGGTGTCCATTGCTATAGACAATCTTGATTCTTTTGGGGATGTTGGGTACCTAGACTTCGAGTTTCTCGATCAAGTCTTGCCGCACTGCTCCAAAGACCAGTTGATTCACATCGAGAAGAGCACAAAAGATGTCGACCTGACTCCGATCACCAATAAGCTGTGGAAGTGGTTCTTTGAGAGAGAGTTCAGTGGCAAAGCCACTGATGAGGTGATCCAGAAGATGAAGATAAGAAAACGAGTTTCAAGTGGTCGGAGTTGTACCAGGCCAAGTCGAAGAGGATGA

Protein Analysis

106

Amino Acids

12.37

Weight (kDa)

8.49

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 25 - 88 2e-12 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 171
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 244
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 2 cut(s) 86, 298
AgsI TTSAA 1 cut(s) 282
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 1 cut(s) 244
AoxI GGCC 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 206
Asp718I GGTACC 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 178, 259
BanI GGYRCC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 77, 109
Bbv12I GWGCWC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 41, 136
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 146
BseBI CCWGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 146
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 2 cut(s) 41, 136
BshFI GGCC 1 cut(s) 304
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 29
BsnI GGCC 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 3 cut(s) 106, 183, 249
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 2 cut(s) 41, 136
BssMI GATC 3 cut(s) 106, 183, 249
Bst2UI CCWGG 1 cut(s) 301
Bst6I CTCTTC 2 cut(s) 149, 307
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 3 cut(s) 109, 186, 252
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 3 cut(s) 106, 183, 249
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 304
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 4 cut(s) 34, 121, 232, 237
Csp6I GTAC 2 cut(s) 85, 297
CviJI RGCY 3 cut(s) 196, 236, 304
CviKI_1 RGCY 3 cut(s) 196, 236, 304
CviQI GTAC 2 cut(s) 85, 297
DpnI GATC 3 cut(s) 108, 185, 251
DpnII GATC 3 cut(s) 106, 183, 249
DraIII CACNNNGTG 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 149, 307
EarI CTCTTC 2 cut(s) 149, 307
EcoRII CCWGG 1 cut(s) 299
FaiI YATR 1 cut(s) 53
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 304
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 3 cut(s) 65, 142, 178
HphI GGTGA 2 cut(s) 178, 259
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 183, 291
Hpy188III TCNNGA 4 cut(s) 62, 104, 151, 253
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 6
KpnI GGTACC 1 cut(s) 88
Kzo9I GATC 3 cut(s) 106, 183, 249
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 6 cut(s) 22, 149, 188, 266, 286, 313
MaeI CTAG 1 cut(s) 89
MalI GATC 3 cut(s) 108, 185, 251
MboI GATC 3 cut(s) 106, 183, 249
MboII GAAGA 3 cut(s) 166, 268, 274
MhlI GDGCHC 1 cut(s) 161
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 2 cut(s) 238, 308
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
NdeII GATC 3 cut(s) 106, 183, 249
NlaIV GGNNCC 1 cut(s) 86
PciSI GCTCTTC 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 65, 142
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 86
RsaI GTAC 2 cut(s) 86, 298
RsaNI GTAC 2 cut(s) 85, 297
SalI GTCGAC 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 3 cut(s) 106, 183, 249
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 161
SetI ASST 5 cut(s) 17, 90, 177, 198, 249
SfcI CTRYAG 1 cut(s) 51
SsiI CCGC 1 cut(s) 119
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 299
TaqI TCGA 5 cut(s) 96, 105, 150, 171, 310
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 2 cut(s) 65, 142
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 4 cut(s) 41, 128, 232, 244
TspDTI ATGAA 1 cut(s) 275
TspRI CASTG 4 cut(s) 41, 128, 232, 244
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.