Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004617

Physical Location & Seq

Genomic Coordinates Reverse (-)

26080694 .. 26085286

Gene Structure 4593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G241600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCAGACGGAGGCGAGGGTTGGGGTGGTGGTGGAAGGAGGACAGAGAGCTCTGAATACTGGGCATGGAGGCGTGGCGGTCGAAGGCGGTGTGAGAACACTGGCGCAGTCCCTGCCACAGAAACAGCCGAAGCCTCTGCACCAACAGTCTCAGATTGGAACGGTGTCGCAGCTTCTCGCCGGAGGTGTTGCCGGAGCTCTTAGTAAAACTTGTACGGCGCCTCTTGCTCGCCTTACCATTCTTTTTCAGGTGCAAGGAATGCACTCAGATGTTGCAACATTGAGAAAGGCTAGCATATGGCGTGAGGCCTCAAGGATTGCTGGTGAAGAAGGATTTAGAGCTTTCTGGAAAGGAAATCTGGTTACAATTGCTCATCGTCTTCCTTATTCTTCTGTCAATTTCTATGCATACGAACATTATAAAAAGTTCCTACAAACAATGCCAGGACTGGAAAATCATAGGGAGAACTTGAGTACAGACCTTTGCGTACATTTTGTGGGTGGTGGATTGGCGGGAATAACAGCTGCATCAGCTACATATCCTTTGGATCTTGTAAGGACGCGCCTTGCAGCTCAGACAAATGTGATGTACTACAAAGGTATTTGGCAAACTTTGCGAACTATTAGTCGAGATGAGGGTCTTTTTGGCCTCTATAAGGGACTTGGAGCAACCCTCTTGGGTGTCGGGCCCAGTATAGCTATCAGTTTTTCCGTGTATGAGACCTTGAGAGCTTCTTGGCAGTCACATAGGCCCAATGATTCTACTGTGTTGGTTAGTCTTGCTTGTGGGAGCCTTTCAGGAATTGCGTCATCAACAGCAACATTTCCATTGGATCTTGTGAGACGAAGGAAGCAGTTGGAAGGGGCCGGTGGCCGAGCCCGTGTCTACACAACAGGCCTTTTTGGTACGTTTAAGCAAATATTCAGGACGGAAGGCTTACGTGGCCTGTATAGAGGAATCCTACCAGAATACTACAAGGTGGTACCTGGTGTAGGTATTTGTTTTATGACGTACGAGACATTGAAGATGCTGTTAGCAGATGTTAGTGCTGGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

353

Amino Acids

38.1

Weight (kDa)

9.8

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55640 AT3G55640 AT3G55640 AT3G55640
fragaria_vesca	FvH4_7g23560 FvH4_7g23560 FvH4_7g23560 FvH4_7g23560
malus_domestica	MD01G1141400.v1.1 MD07G1205500.v1.1
prunus_persica	Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1
pyrus_communis	pycom01g16170 pycom07g19210
rosa_chinensis	RchiOBHm_Chr1g0368721
rosa_laevigata	RLG00000027194
rosa_multiflora	Rmu_sc0001791.1_g000016
rosa_roxburghii	Rroxscaffold_4G00288330
rosa_rugosa	Rorug01G0344200 Rorug01G0344200 Rorug01G0344200 Rorug01G0344300 Rorug01G0344400
rosa_samantha	Rh1AG351500 Rh1BG315200 Rh1DG346700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
Acc65I	GGTACC	1 cut(s)	982
AccB1I	GGYRCC	2 cut(s)	217, 982
AccI	GTMKAC	1 cut(s)	885
AccII	CGCG	1 cut(s)	562
AciI	CCGC	3 cut(s)	77, 87, 512
AclWI	GGATC	2 cut(s)	555, 840
AcoI	YGGCCR	1 cut(s)	871
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	7 cut(s)	214, 475, 489, 590, 907, 984, 1013
AfiI	CCNNNNNNNGG	2 cut(s)	655, 992
AgsI	TTSAA	1 cut(s)	1024
AjnI	CCWGG	2 cut(s)	442, 985
AluBI	AGCT	9 cut(s)	50, 172, 197, 341, 524, 533, 572, 698, 731
AluI	AGCT	9 cut(s)	50, 172, 197, 341, 524, 533, 572, 698, 731
Alw21I	GWGCWC	2 cut(s)	52, 199
Alw26I	GTCTC	4 cut(s)	153, 713, 835, 1010
AlwI	GGATC	2 cut(s)	555, 840
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	8 cut(s)	306, 646, 686, 749, 864, 871, 895, 943
ApaI	GGGCCC	1 cut(s)	690
ApeKI	GCWGC	3 cut(s)	169, 524, 569
ArsI	GACNNNNNNTTYG	2 cut(s)	610, 642
Asp718I	GGTACC	1 cut(s)	982
AspLEI	GCGC	3 cut(s)	106, 220, 564
AspS9I	GGNCC	4 cut(s)	686, 687, 750, 864
AsuHPI	GGTGA	1 cut(s)	335
AsuNHI	GCTAGC	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	690
BanI	GGYRCC	2 cut(s)	217, 982
BanII	GRGCYC	4 cut(s)	52, 199, 690, 880
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	52, 199
BbvI	GCAGC	3 cut(s)	181, 511, 581
BceAI	ACGGC	1 cut(s)	231
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	2 cut(s)	444, 987
BcoDI	GTCTC	4 cut(s)	153, 713, 835, 1010
BfaI	CTAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	3 cut(s)	170, 525, 570
BlsI	GCNGC	3 cut(s)	171, 526, 571
Bme1390I	CCNGG	2 cut(s)	444, 987
BmgT120I	GGNCC	4 cut(s)	686, 687, 750, 864
BmiI	GGNNCC	5 cut(s)	219, 688, 791, 865, 984
BmrFI	CCNGG	2 cut(s)	444, 987
BmrI	ACTGGG	2 cut(s)	69, 684
BmsI	GCATC	2 cut(s)	536, 1017
BmtI	GCTAGC	1 cut(s)	294
BmuI	ACTGGG	2 cut(s)	69, 684
BpiI	GAAGAC	1 cut(s)	371
BplI	GAGNNNNNCTC	2 cut(s)	657, 689
BpuEI	CTTGAG	3 cut(s)	295, 490, 745
BsaAI	YACGTR	1 cut(s)	941
BsaHI	GRCGYC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	713
Bsc4I	CCNNNNNNNGG	2 cut(s)	655, 992
Bse118I	RCCGGY	1 cut(s)	866
Bse1I	ACTGG	4 cut(s)	64, 105, 453, 690
BseBI	CCWGG	2 cut(s)	444, 987
BseLI	CCNNNNNNNGG	2 cut(s)	655, 992
BseMII	CTCAG	3 cut(s)	164, 279, 587
BseNI	ACTGG	4 cut(s)	64, 105, 453, 690
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	3 cut(s)	181, 511, 581
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	562
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	8 cut(s)	308, 648, 688, 751, 866, 873, 897, 945
BshNI	GGYRCC	2 cut(s)	217, 982
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	2 cut(s)	52, 199
BsiSI	CCGG	3 cut(s)	180, 192, 867
BsiWI	CGTACG	1 cut(s)	1011
BslFI	GGGAC	2 cut(s)	94, 672
BslI	CCNNNNNNNGG	2 cut(s)	655, 992
BsmAI	GTCTC	4 cut(s)	153, 713, 835, 1010
BsmBI	CGTCTC	1 cut(s)	835
BsmFI	GGGAC	2 cut(s)	94, 672
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	8 cut(s)	308, 648, 688, 751, 866, 873, 897, 945
Bso31I	GGTCTC	1 cut(s)	713
Bsp120I	GGGCCC	1 cut(s)	686
Bsp1286I	GDGCHC	4 cut(s)	52, 199, 690, 880
Bsp143I	GATC	2 cut(s)	547, 832
BspACI	CCGC	3 cut(s)	77, 87, 512
BspANI	GGCC	8 cut(s)	308, 648, 688, 751, 866, 873, 897, 945
BspCNI	CTCAG	3 cut(s)	163, 278, 586
BspFNI	CGCG	1 cut(s)	562
BspLI	GGNNCC	5 cut(s)	219, 688, 791, 865, 984
BspOI	GCTAGC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	555, 840
BspT107I	GGYRCC	2 cut(s)	217, 982
BspTNI	GGTCTC	1 cut(s)	713
BsrFI	RCCGGY	1 cut(s)	866
BsrI	ACTGG	4 cut(s)	64, 105, 453, 690
BssAI	RCCGGY	1 cut(s)	866
BssMI	GATC	2 cut(s)	547, 832
BssNI	GRCGYC	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	444, 987
Bst4CI	ACNGT	3 cut(s)	147, 163, 766
BstACI	GRCGYC	1 cut(s)	218
BstAPI	GCANNNNNTGC	3 cut(s)	112, 259, 613
BstBAI	YACGTR	1 cut(s)	941
BstC8I	GCNNGC	2 cut(s)	229, 292
BstDEI	CTNAG	4 cut(s)	150, 200, 265, 573
BstENI	CCTNNNNNAGG	2 cut(s)	653, 990
BstFNI	CGCG	1 cut(s)	562
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	3 cut(s)	106, 220, 564
BstKTI	GATC	2 cut(s)	550, 835
BstMAI	GTCTC	4 cut(s)	153, 713, 835, 1010
BstMBI	GATC	2 cut(s)	547, 832
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	6 cut(s)	112, 224, 259, 530, 613, 942
BstNI	CCWGG	2 cut(s)	444, 987
BstSCI	CCNGG	2 cut(s)	442, 985
BstSLI	GKGCMC	1 cut(s)	690
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	3 cut(s)	181, 511, 581
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	2 cut(s)	547, 832
BstYI	RGATCY	2 cut(s)	547, 832
BsuRI	GGCC	8 cut(s)	308, 648, 688, 751, 866, 873, 897, 945
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	229, 292
CaiI	CAGNNNCTG	1 cut(s)	112
CfoI	GCGC	3 cut(s)	106, 220, 564
Cfr10I	RCCGGY	1 cut(s)	866
Cfr13I	GGNCC	4 cut(s)	686, 687, 750, 864
CseI	GACGC	2 cut(s)	568, 795
CsiI	ACCWGGT	1 cut(s)	985
Csp6I	GTAC	7 cut(s)	213, 474, 488, 589, 906, 983, 1012
CviAII	CATG	1 cut(s)	65
CviQI	GTAC	7 cut(s)	213, 474, 488, 589, 906, 983, 1012
DdeI	CTNAG	4 cut(s)	150, 200, 265, 573
DinI	GGCGCC	1 cut(s)	219
DpnI	GATC	2 cut(s)	549, 834
DpnII	GATC	2 cut(s)	547, 832
EaeI	YGGCCR	1 cut(s)	871
Ecl136II	GAGCTC	2 cut(s)	50, 197
Eco147I	AGGCCT	2 cut(s)	308, 897
Eco24I	GRGCYC	4 cut(s)	52, 199, 690, 880
Eco31I	GGTCTC	1 cut(s)	713
Eco53kI	GAGCTC	2 cut(s)	50, 197
EcoICRI	GAGCTC	2 cut(s)	50, 197
EcoNI	CCTNNNNNAGG	2 cut(s)	653, 990
EcoRII	CCWGG	2 cut(s)	442, 985
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	4 cut(s)	52, 199, 690, 880
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	835
FaeI	CATG	1 cut(s)	68
FaqI	GGGAC	2 cut(s)	94, 672
FatI	CATG	1 cut(s)	64
FauI	CCCGC	1 cut(s)	505
FauNDI	CATATG	1 cut(s)	296
FblI	GTMKAC	1 cut(s)	885
Fnu4HI	GCNGC	3 cut(s)	170, 525, 570
FriOI	GRGCYC	4 cut(s)	52, 199, 690, 880
Fsp4HI	GCNGC	3 cut(s)	170, 525, 570
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	3 cut(s)	105, 219, 563
GluI	GCNGC	3 cut(s)	170, 525, 570
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	8 cut(s)	308, 648, 688, 751, 866, 873, 897, 945
HapII	CCGG	3 cut(s)	180, 192, 867
HgaI	GACGC	2 cut(s)	568, 795
HhaI	GCGC	3 cut(s)	106, 220, 564
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	68
Hin6I	GCGC	3 cut(s)	104, 218, 562
HinP1I	GCGC	3 cut(s)	104, 218, 562
HinfI	GANTC	2 cut(s)	758, 957
HpaII	CCGG	3 cut(s)	180, 192, 867
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	886
Hpy188I	TCNGA	4 cut(s)	54, 153, 268, 576
Hpy188III	TCNNGA	4 cut(s)	346, 629, 798, 925
Hpy8I	GTNNAC	1 cut(s)	886
HpyAV	CCTTC	6 cut(s)	29, 77, 323, 840, 854, 926
HpyCH4III	ACNGT	3 cut(s)	147, 163, 766
HpyCH4IV	ACGT	3 cut(s)	908, 940, 1010
HpyCH4V	TGCA	8 cut(s)	4, 139, 253, 262, 275, 407, 527, 569
HpyF10VI	GCNNNNNNNGC	6 cut(s)	112, 224, 259, 530, 613, 942
HpyF3I	CTNAG	4 cut(s)	150, 200, 265, 573
HpySE526I	ACGT	3 cut(s)	908, 940, 1010
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	68
HspAI	GCGC	3 cut(s)	104, 218, 562
KasI	GGCGCC	1 cut(s)	217
KpnI	GGTACC	1 cut(s)	986
Kzo9I	GATC	2 cut(s)	547, 832
LmnI	GCTCC	3 cut(s)	194, 665, 789
Lsp1109I	GCAGC	3 cut(s)	181, 511, 581
LweI	GCATC	2 cut(s)	536, 1017
MabI	ACCWGGT	1 cut(s)	985
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	3 cut(s)	908, 940, 1010
MaeIII	GTNAC	2 cut(s)	361, 741
MalI	GATC	2 cut(s)	549, 834
MboI	GATC	2 cut(s)	547, 832
MboII	GAAGA	4 cut(s)	338, 371, 381, 1036
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	2 cut(s)	547, 832
MhlI	GDGCHC	4 cut(s)	52, 199, 690, 880
MluCI	AATT	3 cut(s)	366, 397, 801
Mly113I	GGCGCC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	837
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	1 cut(s)	912
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	3 cut(s)	180, 192, 867
MspR9I	CCNGG	2 cut(s)	444, 987
MunI	CAATTG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	264
MvaI	CCWGG	2 cut(s)	444, 987
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	6 cut(s)	112, 224, 259, 530, 613, 942
NarI	GGCGCC	1 cut(s)	218
NdeI	CATATG	1 cut(s)	296
NdeII	GATC	2 cut(s)	547, 832
NheI	GCTAGC	1 cut(s)	290
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	5 cut(s)	219, 688, 791, 865, 984
NmeAIII	GCCGAG	1 cut(s)	899
NmuCI	GTSAC	1 cut(s)	741
NsiI	ATGCAT	1 cut(s)	409
PceI	AGGCCT	2 cut(s)	308, 897
PctI	GAATGC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	758, 957
Pfl23II	CGTACG	1 cut(s)	1011
PkrI	GCNGC	3 cut(s)	171, 526, 571
PluTI	GGCGCC	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	941
PsiI	TTATAA	1 cut(s)	420
Psp124BI	GAGCTC	2 cut(s)	52, 199
Psp6I	CCWGG	2 cut(s)	442, 985
PspGI	CCWGG	2 cut(s)	442, 985
PspLI	CGTACG	1 cut(s)	1011
PspN4I	GGNNCC	5 cut(s)	219, 688, 791, 865, 984
PspOMI	GGGCCC	1 cut(s)	686
PspPI	GGNCC	4 cut(s)	686, 687, 750, 864
PstNI	CAGNNNCTG	1 cut(s)	112
PsuI	RGATCY	2 cut(s)	547, 832
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	7 cut(s)	214, 475, 489, 590, 907, 984, 1013
RsaNI	GTAC	7 cut(s)	213, 474, 488, 589, 906, 983, 1012
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	2 cut(s)	52, 199
SaqAI	TTAA	1 cut(s)	912
SatI	GCNGC	3 cut(s)	170, 525, 570
Sau3AI	GATC	2 cut(s)	547, 832
Sau96I	GGNCC	4 cut(s)	686, 687, 750, 864
ScrFI	CCNGG	2 cut(s)	444, 987
SduI	GDGCHC	4 cut(s)	52, 199, 690, 880
SexAI	ACCWGGT	1 cut(s)	985
SfaNI	GCATC	2 cut(s)	536, 1017
SfoI	GGCGCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	3 cut(s)	310, 469, 724
SmoI	CTYRAG	3 cut(s)	310, 469, 724
Sse9I	AATT	3 cut(s)	366, 397, 801
SseBI	AGGCCT	2 cut(s)	308, 897
SsiI	CCGC	3 cut(s)	77, 87, 512
SspDI	GGCGCC	1 cut(s)	217
SspI	AATATT	1 cut(s)	921
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	2 cut(s)	52, 199
StuI	AGGCCT	2 cut(s)	308, 897
StyD4I	CCNGG	2 cut(s)	442, 985
TaaI	ACNGT	3 cut(s)	147, 163, 766
TaiI	ACGT	3 cut(s)	911, 943, 1013
TaqI	TCGA	2 cut(s)	81, 628
TasI	AATT	3 cut(s)	366, 397, 801
TatI	WGTACW	2 cut(s)	473, 588
TfiI	GAWTC	2 cut(s)	758, 957
Tru1I	TTAA	1 cut(s)	912
Tru9I	TTAA	1 cut(s)	912
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	741
TseI	GCWGC	3 cut(s)	169, 524, 569
Tsp45I	GTSAC	1 cut(s)	741
TspGWI	ACGGA	3 cut(s)	23, 700, 944
TspRI	CASTG	1 cut(s)	105
XagI	CCTNNNNNAGG	2 cut(s)	653, 990
XmiI	GTMKAC	1 cut(s)	885
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.