Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004617

Physical Location & Seq

Genomic Coordinates Reverse (-)

18348985 .. 18353347

Gene Structure 4363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23560.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCAGACGGAGGCGAGAGTTGGGGTGGTGGTGGATGGAGGATCTCAGAGAGCTCTACACGCCGGCCATGGCGGCGTCGCCGCCGTCGCGCAGTCACTGCCTCAGCCGCAACCCAAGTCTCTGCAGCAGAAACACCAGTCTCAGATCGGAACGGTGTCGCAGCTTCTAGCCGGAGGTGTGGCCGGAGCTCTGGCGAAGACGTGTACTGCGCCTCTGGCTCGTCTTACTATTCTCTTTCAGATACAAGGTATGCACTCGGATGTTGCGACCATGAGAAAAGCTAGCATATGGCGTGAAGCCTCAAGAATTGTTGGTGAAGAGGGATTTAGAGCTTTCTGGAAAGGAAATCTGGTTACAATTGCTCACCGTCTTCCATATTCTTCCGTCAATTTCTATTCGTATGAGCAGTATAAAAAGATTCTACAGACAGTTCCAGGACTCAAAAACTCCAGAGATAATATGAGTACGGACATTTGCGTACATTTTGTGGGTGGAGGTTTGGCAGGAATAACAGCTGCCACAGCCACATATCCTTTGGATCTTGTAAGGACACGCCTTGCAGTTCAGACAAACGTAATGTACTACCAGGGCATTGGGCACGCGTTGCGAACTATTAGCAGGGATGAGGGTATCTTTGGTCTCTATAAAGGACTTGGAGCAACCCTCTTGGGTGTCGGGCCCAGTATAGCTATCAGTTTTACAGTATATGAGACATTAAGATCTTATTGGCAGGCCCAGAGGCCTGATGATTCTACTGTGCTGGTTAGTCTTGCTTGTGGGAGCCTTTCAGGAATCGCTTCATCAACAGAGAAAACAGGTTGTGGTGCAGGCTCTGCACCAAGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

283

Amino Acids

29.88

Weight (kDa)

9.51

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	49 - 143	2.1e-21	Mitochondrial carrier protein
Mito_carr	PF00153	159 - 244	1.2e-24	Mitochondrial carrier protein
Mito_carr	PF00153	251 - 343	3.4e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55640 AT3G55640 AT3G55640 AT3G55640
fragaria_vesca	FvH4_7g23560 FvH4_7g23560 FvH4_7g23560 FvH4_7g23560
malus_domestica	MD01G1141400.v1.1 MD07G1205500.v1.1
prunus_persica	Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1 Prupe.2G241600_v2.0.a1
pyrus_communis	pycom01g16170 pycom07g19210
rosa_chinensis	RchiOBHm_Chr1g0368721
rosa_laevigata	RLG00000027194
rosa_multiflora	Rmu_sc0001791.1_g000016
rosa_roxburghii	Rroxscaffold_4G00288330
rosa_rugosa	Rorug01G0344200 Rorug01G0344200 Rorug01G0344200 Rorug01G0344300 Rorug01G0344400
rosa_samantha	Rh1AG351500 Rh1BG315200 Rh1DG346700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	89, 602
AciI	CCGC	3 cut(s)	72, 81, 107
AclWI	GGATC	2 cut(s)	49, 546
AcoI	YGGCCR	2 cut(s)	64, 180
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	4 cut(s)	205, 466, 480, 581
AflIII	ACRYGT	2 cut(s)	200, 600
AjiI	CACGTC	1 cut(s)	201
AjnI	CCWGG	2 cut(s)	433, 585
AluBI	AGCT	7 cut(s)	53, 163, 188, 281, 332, 515, 689
AluI	AGCT	7 cut(s)	53, 163, 188, 281, 332, 515, 689
Alw21I	GWGCWC	2 cut(s)	55, 190
Alw26I	GTCTC	4 cut(s)	123, 144, 644, 704
AlwI	GGATC	2 cut(s)	49, 546
AlwNI	CAGNNNCTG	2 cut(s)	97, 833
AoxI	GGCC	5 cut(s)	64, 180, 677, 732, 740
ApaI	GGGCCC	1 cut(s)	681
ApeKI	GCWGC	3 cut(s)	124, 160, 515
Asp700I	GAANNNNTTC	1 cut(s)	796
AspLEI	GCGC	2 cut(s)	91, 211
AspS9I	GGNCC	3 cut(s)	677, 678, 733
AsuHPI	GGTGA	2 cut(s)	326, 356
AsuNHI	GCTAGC	1 cut(s)	281
BaeGI	GKGCMC	2 cut(s)	600, 681
BanII	GRGCYC	3 cut(s)	55, 190, 681
BbsI	GAAGAC	2 cut(s)	203, 362
Bbv12I	GWGCWC	2 cut(s)	55, 190
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	3 cut(s)	136, 172, 502
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	435, 587
BcoDI	GTCTC	4 cut(s)	123, 144, 644, 704
BfaI	CTAG	2 cut(s)	167, 282
BfmI	CTRYAG	2 cut(s)	122, 422
BglI	GCCNNNNNGGC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	6 cut(s)	73, 81, 107, 125, 161, 516
BlsI	GCNGC	6 cut(s)	74, 82, 108, 126, 162, 517
Bme1390I	CCNGG	2 cut(s)	435, 587
BmgBI	CACGTC	1 cut(s)	201
BmgT120I	GGNCC	3 cut(s)	677, 678, 733
BmiI	GGNNCC	2 cut(s)	679, 782
BmrFI	CCNGG	2 cut(s)	435, 587
BmrI	ACTGGG	1 cut(s)	675
BmtI	GCTAGC	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	675
BpiI	GAAGAC	2 cut(s)	203, 362
BplI	GAGNNNNNCTC	2 cut(s)	648, 680
BpmI	CTGGAG	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	67, 586
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	136, 681
BseBI	CCWGG	2 cut(s)	435, 587
BseDI	CCNNGG	2 cut(s)	67, 586
BseGI	GGATG	3 cut(s)	40, 265, 628
BseMII	CTCAG	3 cut(s)	59, 116, 155
BseNI	ACTGG	2 cut(s)	136, 681
BseSI	GKGCMC	2 cut(s)	600, 681
BseXI	GCAGC	3 cut(s)	136, 172, 502
BsgI	GTGCAG	2 cut(s)	819, 846
Bsh1236I	CGCG	2 cut(s)	89, 602
BshFI	GGCC	5 cut(s)	66, 182, 679, 734, 742
BsiHKAI	GWGCWC	2 cut(s)	55, 190
BsiSI	CCGG	3 cut(s)	63, 171, 183
BsmAI	GTCTC	4 cut(s)	123, 144, 644, 704
BsnI	GGCC	5 cut(s)	66, 182, 679, 734, 742
Bso31I	GGTCTC	1 cut(s)	644
Bsp120I	GGGCCC	1 cut(s)	677
Bsp1286I	GDGCHC	4 cut(s)	55, 190, 600, 681
Bsp143I	GATC	4 cut(s)	41, 144, 538, 719
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	3 cut(s)	72, 81, 107
BspANI	GGCC	5 cut(s)	66, 182, 679, 734, 742
BspCNI	CTCAG	3 cut(s)	58, 115, 154
BspFNI	CGCG	2 cut(s)	89, 602
BspLI	GGNNCC	2 cut(s)	679, 782
BspMAI	CTGCAG	1 cut(s)	126
BspOI	GCTAGC	1 cut(s)	285
BspPI	GGATC	2 cut(s)	49, 546
BspTNI	GGTCTC	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	136, 681
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	67, 586
BssMI	GATC	4 cut(s)	41, 144, 538, 719
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	435, 587
Bst4CI	ACNGT	5 cut(s)	154, 368, 430, 703, 757
Bst6I	CTCTTC	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	75
BstAPI	GCANNNNNTGC	3 cut(s)	97, 604, 833
BstC8I	GCNNGC	5 cut(s)	64, 283, 600, 732, 829
BstDEI	CTNAG	3 cut(s)	45, 102, 141
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	40, 265, 628
BstFNI	CGCG	2 cut(s)	89, 602
BstHHI	GCGC	2 cut(s)	91, 211
BstKTI	GATC	4 cut(s)	44, 147, 541, 722
BstMAI	GTCTC	4 cut(s)	123, 144, 644, 704
BstMBI	GATC	4 cut(s)	41, 144, 538, 719
BstMWI	GCNNNNNNNGC	9 cut(s)	59, 72, 86, 97, 106, 215, 521, 604, 833
BstNI	CCWGG	2 cut(s)	435, 587
BstSCI	CCNGG	2 cut(s)	433, 585
BstSFI	CTRYAG	2 cut(s)	122, 422
BstSLI	GKGCMC	2 cut(s)	600, 681
BstUI	CGCG	2 cut(s)	89, 602
BstV1I	GCAGC	3 cut(s)	136, 172, 502
BstV2I	GAAGAC	2 cut(s)	203, 362
BstX2I	RGATCY	3 cut(s)	41, 538, 719
BstXI	CCANNNNNNTGG	1 cut(s)	593
BstYI	RGATCY	3 cut(s)	41, 538, 719
BsuRI	GGCC	5 cut(s)	66, 182, 679, 734, 742
BtgI	CCRYGG	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	40, 265, 628
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	5 cut(s)	64, 283, 600, 732, 829
CaiI	CAGNNNCTG	2 cut(s)	97, 833
CfoI	GCGC	2 cut(s)	91, 211
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	3 cut(s)	677, 678, 733
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	4 cut(s)	204, 465, 479, 580
CviAII	CATG	2 cut(s)	68, 271
CviQI	GTAC	4 cut(s)	204, 465, 479, 580
DdeI	CTNAG	3 cut(s)	45, 102, 141
DpnI	GATC	4 cut(s)	43, 146, 540, 721
DpnII	GATC	4 cut(s)	41, 144, 538, 719
EaeI	YGGCCR	2 cut(s)	64, 180
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Ecl136II	GAGCTC	2 cut(s)	53, 188
Eco130I	CCWWGG	1 cut(s)	67
Eco147I	AGGCCT	1 cut(s)	742
Eco24I	GRGCYC	3 cut(s)	55, 190, 681
Eco31I	GGTCTC	1 cut(s)	644
Eco53kI	GAGCTC	2 cut(s)	53, 188
EcoICRI	GAGCTC	2 cut(s)	53, 188
EcoRII	CCWGG	2 cut(s)	433, 585
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	3 cut(s)	55, 190, 681
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	2 cut(s)	71, 274
FatI	CATG	2 cut(s)	67, 270
FauNDI	CATATG	1 cut(s)	287
Fnu4HI	GCNGC	6 cut(s)	73, 81, 107, 125, 161, 516
FokI	GGATG	3 cut(s)	47, 272, 635
FriOI	GRGCYC	3 cut(s)	55, 190, 681
Fsp4HI	GCNGC	6 cut(s)	73, 81, 107, 125, 161, 516
FspBI	CTAG	2 cut(s)	167, 282
GlaI	GCGC	2 cut(s)	90, 210
GluI	GCNGC	6 cut(s)	73, 81, 107, 125, 161, 516
GsuI	CTGGAG	1 cut(s)	433
HaeIII	GGCC	5 cut(s)	66, 182, 679, 734, 742
HapII	CCGG	3 cut(s)	63, 171, 183
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	2 cut(s)	91, 211
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	71, 274
Hin6I	GCGC	2 cut(s)	89, 209
HinP1I	GCGC	2 cut(s)	89, 209
HinfI	GANTC	4 cut(s)	418, 438, 749, 792
HpaII	CCGG	3 cut(s)	63, 171, 183
HphI	GGTGA	2 cut(s)	326, 356
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	6 cut(s)	48, 144, 149, 240, 259, 567
Hpy188III	TCNNGA	4 cut(s)	303, 337, 450, 789
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	2 cut(s)	80, 89
HpyCH4III	ACNGT	5 cut(s)	154, 368, 430, 703, 757
HpyCH4IV	ACGT	2 cut(s)	200, 573
HpyCH4V	TGCA	6 cut(s)	4, 124, 253, 560, 827, 836
HpyF10VI	GCNNNNNNNGC	9 cut(s)	59, 72, 86, 97, 106, 215, 521, 604, 833
HpyF3I	CTNAG	3 cut(s)	45, 102, 141
HpySE526I	ACGT	2 cut(s)	200, 573
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	71, 274
HspAI	GCGC	2 cut(s)	89, 209
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	41, 144, 538, 719
LmnI	GCTCC	3 cut(s)	185, 656, 780
Lsp1109I	GCAGC	3 cut(s)	136, 172, 502
MaeI	CTAG	2 cut(s)	167, 282
MaeII	ACGT	2 cut(s)	200, 573
MaeIII	GTNAC	2 cut(s)	93, 352
MalI	GATC	4 cut(s)	43, 146, 540, 721
MboI	GATC	4 cut(s)	41, 144, 538, 719
MboII	GAAGA	4 cut(s)	208, 329, 362, 372
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	3 cut(s)	41, 538, 719
MhlI	GDGCHC	4 cut(s)	55, 190, 600, 681
MluCI	AATT	3 cut(s)	306, 357, 388
MluI	ACGCGT	1 cut(s)	600
MlyI	GAGTC	1 cut(s)	432
MroNI	GCCGGC	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	796
MseI	TTAA	2 cut(s)	716, 847
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	3 cut(s)	63, 171, 183
MspR9I	CCNGG	2 cut(s)	435, 587
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	2 cut(s)	435, 587
MvnI	CGCG	2 cut(s)	89, 602
MwoI	GCNNNNNNNGC	9 cut(s)	59, 72, 86, 97, 106, 215, 521, 604, 833
NaeI	GCCGGC	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	67
NdeI	CATATG	1 cut(s)	287
NdeII	GATC	4 cut(s)	41, 144, 538, 719
NgoMIV	GCCGGC	1 cut(s)	62
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	71, 274
NlaIV	GGNNCC	2 cut(s)	679, 782
NmuCI	GTSAC	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	742
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdiI	GCCGGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	3 cut(s)	418, 749, 792
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	6 cut(s)	74, 82, 108, 126, 162, 517
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
Psp124BI	GAGCTC	2 cut(s)	55, 190
Psp6I	CCWGG	2 cut(s)	433, 585
PspGI	CCWGG	2 cut(s)	433, 585
PspN4I	GGNNCC	2 cut(s)	679, 782
PspOMI	GGGCCC	1 cut(s)	677
PspPI	GGNCC	3 cut(s)	677, 678, 733
PstI	CTGCAG	1 cut(s)	126
PstNI	CAGNNNCTG	2 cut(s)	97, 833
PsuI	RGATCY	3 cut(s)	41, 538, 719
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	4 cut(s)	205, 466, 480, 581
RsaNI	GTAC	4 cut(s)	204, 465, 479, 580
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	2 cut(s)	55, 190
SaqAI	TTAA	2 cut(s)	716, 847
SatI	GCNGC	6 cut(s)	73, 81, 107, 125, 161, 516
Sau3AI	GATC	4 cut(s)	41, 144, 538, 719
Sau96I	GGNCC	3 cut(s)	677, 678, 733
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	2 cut(s)	435, 587
SduI	GDGCHC	4 cut(s)	55, 190, 600, 681
SfcI	CTRYAG	2 cut(s)	122, 422
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	3 cut(s)	306, 357, 388
SseBI	AGGCCT	1 cut(s)	742
SsiI	CCGC	3 cut(s)	72, 81, 107
SspMI	CTAG	2 cut(s)	167, 282
SstI	GAGCTC	2 cut(s)	55, 190
StuI	AGGCCT	1 cut(s)	742
StyD4I	CCNGG	2 cut(s)	433, 585
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	5 cut(s)	154, 368, 430, 703, 757
TaiI	ACGT	2 cut(s)	203, 576
TasI	AATT	3 cut(s)	306, 357, 388
TatI	WGTACW	2 cut(s)	203, 579
TauI	GCSGC	3 cut(s)	75, 83, 109
TfiI	GAWTC	3 cut(s)	418, 749, 792
Tru1I	TTAA	2 cut(s)	716, 847
Tru9I	TTAA	2 cut(s)	716, 847
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	3 cut(s)	124, 160, 515
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	789
TspGWI	ACGGA	3 cut(s)	23, 373, 482
TspRI	CASTG	1 cut(s)	102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	796
XspI	CTAG	2 cut(s)	167, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.