Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007262

Physical Location & Seq

Genomic Coordinates Forward (+)

20705577 .. 20707334

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAAGAAAATGCACTCTCTCTCCTCTTATCTCCTCCTCCTTATCTCGTTAACCGCCATAGCTACACCTACGACAACCTCCGCCACAACGATCGGAGTCACATACTCGACTCCAGCTTCAATCTCCGGCACCGTACAACTCTCACCGGACAGAATCGCCGAAAAAGTCGTTTCAATGAACATTCCGGCGGTGAGACTCCTCGATTCAAATCCGGCGATGATTCGTGCCTTCGCTTACACAAACGTATCTCTCTTCCTCTCCGTACCAAATCCACTAGTTCCTCTCCTCGCTTCAAATCGTTCTCTCGCGATGCGTTGGGTCTATCGCCATGTGCTTCCTTTTTATCCTCGCACCAAGATCTCAATCATCTCCGTCGGTAACGACGTGATTTCGTATTCTCCGGACGTATCTCCGTTTCTCCTCCGTGCGATGCAGAATGTTCATCTATCTCTTGTAGATCTGAGAATCTACAAGATCTCTGTATCAACGACGTTCTCTTTCTTCAACATCGTACCCACGGCATTTCCACCTTCGTCGGCGCAGTTTCAACAACCTAACGGAGAAGTTATCATCAGACCGATTTTGCAATTCCTCGAAAGAACGAATTCGTCTTTCTTGATCAATCTCTATCCCTACAATATGTATCGGTCTAGCTTCTCGATTCCGATTGGATTTGCTCTTTTTGAAGAGTTCCCGTTCAATTTCAGAGATGATCTGACCACCGGAGTAAGATACCGGAATCTTTTTGATATGATGGTTGATGCTGTGATTAGCTCTATGGCTGTTATGGGTCATGAGAATCTTCCGGTGATTGTGGCGGAGACTGGTTGGCCTAGCTCTGGAATTGATGCTAGTGAAGTAGATGCGACGTTGTTGTATAGTGAGATGTTCTTGAAAGCTTTGTTGACTCATCTGAGAAGTGGATGTGGAACACCGTTGAGGAAAGAAGGTGTTTCAGAGGTTTATATCTTTGAGCTTGTTGAGAAAGATGCTAAGCAAGGGATTAGGAATTGGGGACTTTTGCATCATAACATGACTAGTAAGTACAGCTTCGACTTCTCGGATGGAGGCAAAGTCAGAAGATTCAAAGAGATTTTGGTTGGATTCTTTGTGCAAGTGGTGATGCTTTACCTGTTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

380

Amino Acids

42.61

Weight (kDa)

9.01

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	48 - 353	8e-52	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55780
fragaria_vesca	FvH4_6g52380 FvH4_7g23880
malus_domestica	MD01G1145800.v1.1 MD07G1213000.v1.1
prunus_persica	Prupe.2G245200_v2.0.a1
pyrus_communis	pycom01g16530 pycom07g19580
rosa_chinensis	RchiOBHm_Chr1g0369251
rosa_laevigata	RLG00000027143
rosa_multiflora	Rmu_co8194304.1_g000001 Rmu_sc0000873.1_g000020 Rmu_sc0006373.1_g000018 Rmu_sc0030627.1_g000001 Rmu_sc0035652.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287820
rosa_rugosa	Rorug01G0349300
rosa_samantha	Rh1BG319900 Rh1CG333800 Rh1DG350500 Rh3AG310300 Rh3BG346500 Rh3CG268000 Rh3DG345600
rosa_wichuraiana	Rw1G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AccII	CGCG	1 cut(s)	308
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	4 cut(s)	54, 81, 188, 818
AcsI	RAATTY	1 cut(s)	604
AfaI	GTAC	4 cut(s)	135, 264, 513, 1046
AfiI	CCNNNNNNNGG	1 cut(s)	839
AhlI	ACTAGT	2 cut(s)	274, 1037
AjiI	CACGTC	1 cut(s)	385
AluBI	AGCT	8 cut(s)	62, 116, 654, 774, 837, 899, 976, 1050
AluI	AGCT	8 cut(s)	62, 116, 654, 774, 837, 899, 976, 1050
Alw26I	GTCTC	2 cut(s)	187, 815
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	1 cut(s)	830
ApoI	RAATTY	1 cut(s)	604
Asp700I	GAANNNNTTC	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	541
AsuHPI	GGTGA	4 cut(s)	135, 202, 820, 1132
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BanI	GGYRCC	1 cut(s)	128
BccI	CCATC	2 cut(s)	748, 1058
BceAI	ACGGC	1 cut(s)	534
BclI	TGATCA	1 cut(s)	618
BcoDI	GTCTC	2 cut(s)	187, 815
BcuI	ACTAGT	2 cut(s)	274, 1037
BfaI	CTAG	5 cut(s)	275, 651, 834, 852, 1038
BglII	AGATCT	3 cut(s)	357, 457, 474
BlpI	GCTNAGC	1 cut(s)	993
BmgBI	CACGTC	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	130
BmsI	GCATC	8 cut(s)	300, 420, 751, 838, 853, 979, 1033, 1113
BpmI	CTGGAG	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	993
BsaBI	GATNNNNATC	2 cut(s)	207, 362
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	5 cut(s)	145, 400, 722, 735, 805
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 1059, 1089
Bsc4I	CCNNNNNNNGG	1 cut(s)	839
Bse1I	ACTGG	1 cut(s)	829
Bse8I	GATNNNNATC	2 cut(s)	207, 362
BseAI	TCCGGA	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	2 cut(s)	929, 1069
BseJI	GATNNNNATC	2 cut(s)	207, 362
BseLI	CCNNNNNNNGG	1 cut(s)	839
BseMII	CTCAG	2 cut(s)	452, 905
BseNI	ACTGG	1 cut(s)	829
BseRI	GAGGAG	6 cut(s)	13, 23, 26, 188, 275, 410
Bsh1236I	CGCG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	832
BshNI	GGYRCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	93
BsiSI	CCGG	8 cut(s)	126, 146, 185, 212, 401, 723, 736, 806
BslFI	GGGAC	1 cut(s)	1029
BslI	CCNNNNNNNGG	1 cut(s)	839
BsmAI	GTCTC	2 cut(s)	187, 815
BsmFI	GGGAC	1 cut(s)	1029
BsnI	GGCC	1 cut(s)	832
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	6 cut(s)	90, 357, 457, 474, 618, 712
Bsp1720I	GCTNAGC	1 cut(s)	993
Bsp68I	TCGCGA	1 cut(s)	308
BspACI	CCGC	4 cut(s)	54, 81, 188, 818
BspANI	GGCC	1 cut(s)	832
BspCNI	CTCAG	2 cut(s)	453, 906
BspEI	TCCGGA	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	308
BspHI	TCATGA	1 cut(s)	793
BspLI	GGNNCC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	829
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	6 cut(s)	90, 357, 457, 474, 618, 712
Bst4CI	ACNGT	2 cut(s)	133, 936
Bst6I	CTCTTC	2 cut(s)	257, 681
BstDEI	CTNAG	3 cut(s)	461, 914, 993
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	929, 1069
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	6 cut(s)	93, 360, 460, 477, 621, 715
BstMAI	GTCTC	2 cut(s)	187, 815
BstMBI	GATC	6 cut(s)	90, 357, 457, 474, 618, 712
BstMCI	CGRYCG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	308
BstX2I	RGATCY	3 cut(s)	357, 457, 474
BstYI	RGATCY	3 cut(s)	357, 457, 474
BsuRI	GGCC	1 cut(s)	832
BtgI	CCRYGG	1 cut(s)	516
BtgZI	GCGATG	3 cut(s)	230, 323, 443
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	929, 1069
BtuMI	TCGCGA	1 cut(s)	308
CciI	TCATGA	1 cut(s)	793
CfoI	GCGC	1 cut(s)	541
Csp6I	GTAC	4 cut(s)	134, 263, 512, 1045
CviAII	CATG	3 cut(s)	329, 794, 1033
CviQI	GTAC	4 cut(s)	134, 263, 512, 1045
DdeI	CTNAG	3 cut(s)	461, 914, 993
DpnI	GATC	6 cut(s)	92, 359, 459, 476, 620, 714
DpnII	GATC	6 cut(s)	90, 357, 457, 474, 618, 712
Eam1104I	CTCTTC	2 cut(s)	257, 681
EarI	CTCTTC	2 cut(s)	257, 681
EciI	GGCGGA	2 cut(s)	70, 833
EcoRI	GAATTC	1 cut(s)	604
FaeI	CATG	3 cut(s)	332, 797, 1036
FalI	AAGNNNNNCTT	2 cut(s)	1034, 1066
FaqI	GGGAC	1 cut(s)	1029
FatI	CATG	3 cut(s)	328, 793, 1032
FbaI	TGATCA	1 cut(s)	618
FokI	GGATG	2 cut(s)	936, 1076
FspBI	CTAG	5 cut(s)	275, 651, 834, 852, 1038
GlaI	GCGC	1 cut(s)	540
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	832
HapII	CCGG	8 cut(s)	126, 146, 185, 212, 401, 723, 736, 806
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	3 cut(s)	332, 797, 1036
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	2 cut(s)	51, 906
HindII	GTYRAC	2 cut(s)	51, 906
HindIII	AAGCTT	1 cut(s)	897
HpaI	GTTAAC	1 cut(s)	51
HpaII	CCGG	8 cut(s)	126, 146, 185, 212, 401, 723, 736, 806
HphI	GGTGA	4 cut(s)	135, 202, 820, 1132
Hpy166II	GTNNAC	2 cut(s)	51, 906
Hpy188III	TCNNGA	7 cut(s)	307, 401, 616, 658, 794, 840, 892
Hpy8I	GTNNAC	2 cut(s)	51, 906
Hpy99I	CGWCG	5 cut(s)	377, 386, 493, 538, 871
HpyAV	CCTTC	3 cut(s)	238, 540, 941
HpyCH4III	ACNGT	2 cut(s)	133, 936
HpyCH4IV	ACGT	5 cut(s)	243, 384, 405, 491, 869
HpyCH4V	TGCA	5 cut(s)	13, 433, 586, 1024, 1114
HpyF3I	CTNAG	3 cut(s)	461, 914, 993
HpySE526I	ACGT	5 cut(s)	243, 384, 405, 491, 869
Hsp92II	CATG	3 cut(s)	332, 797, 1036
HspAI	GCGC	1 cut(s)	539
Kpn2I	TCCGGA	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	618
KspAI	GTTAAC	1 cut(s)	51
Kzo9I	GATC	6 cut(s)	90, 357, 457, 474, 618, 712
LweI	GCATC	8 cut(s)	300, 420, 751, 838, 853, 979, 1033, 1113
MaeI	CTAG	5 cut(s)	275, 651, 834, 852, 1038
MaeII	ACGT	5 cut(s)	243, 384, 405, 491, 869
MaeIII	GTNAC	2 cut(s)	97, 377
MalI	GATC	6 cut(s)	92, 359, 459, 476, 620, 714
MboI	GATC	6 cut(s)	90, 357, 457, 474, 618, 712
MboII	GAAGA	6 cut(s)	16, 244, 493, 698, 794, 1092
MflI	RGATCY	3 cut(s)	357, 457, 474
MluCI	AATT	5 cut(s)	587, 604, 700, 843, 1009
MlyI	GAGTC	4 cut(s)	103, 105, 189, 901
MmeI	TCCRAC	1 cut(s)	1081
MroI	TCCGGA	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	604
MseI	TTAA	1 cut(s)	50
MspI	CCGG	8 cut(s)	126, 146, 185, 212, 401, 723, 736, 806
MvnI	CGCG	1 cut(s)	308
NdeII	GATC	6 cut(s)	90, 357, 457, 474, 618, 712
NlaIII	CATG	3 cut(s)	332, 797, 1036
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	97
NruI	TCGCGA	1 cut(s)	308
PagI	TCATGA	1 cut(s)	793
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	604
PfeI	GAWTC	9 cut(s)	153, 203, 220, 465, 661, 739, 799, 1083, 1104
Ple19I	CGATCG	1 cut(s)	93
PleI	GAGTC	4 cut(s)	103, 104, 189, 901
PpsI	GAGTC	4 cut(s)	103, 104, 189, 901
PspN4I	GGNNCC	1 cut(s)	130
PsuI	RGATCY	3 cut(s)	357, 457, 474
PvuI	CGATCG	1 cut(s)	93
RruI	TCGCGA	1 cut(s)	308
RsaI	GTAC	4 cut(s)	135, 264, 513, 1046
RsaNI	GTAC	4 cut(s)	134, 263, 512, 1045
SaqAI	TTAA	1 cut(s)	50
Sau3AI	GATC	6 cut(s)	90, 357, 457, 474, 618, 712
SchI	GAGTC	4 cut(s)	103, 105, 189, 901
SfaNI	GCATC	8 cut(s)	300, 420, 751, 838, 853, 979, 1033, 1113
SpeI	ACTAGT	2 cut(s)	274, 1037
Sse9I	AATT	5 cut(s)	587, 604, 700, 843, 1009
SsiI	CCGC	4 cut(s)	54, 81, 188, 818
SspMI	CTAG	5 cut(s)	275, 651, 834, 852, 1038
TaaI	ACNGT	2 cut(s)	133, 936
TaiI	ACGT	5 cut(s)	246, 387, 408, 494, 872
TaqI	TCGA	5 cut(s)	107, 201, 594, 659, 1053
TaqII	GACCGA	2 cut(s)	592, 636
TasI	AATT	5 cut(s)	587, 604, 700, 843, 1009
TatI	WGTACW	1 cut(s)	1044
TfiI	GAWTC	9 cut(s)	153, 203, 220, 465, 661, 739, 799, 1083, 1104
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	3 cut(s)	17, 191, 431
TspGWI	ACGGA	5 cut(s)	250, 361, 402, 413, 573
XapI	RAATTY	1 cut(s)	604
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	5 cut(s)	275, 651, 834, 852, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.