Rh1CG333800

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007262
Physical Location & Seq
Forward (+)
60874723 .. 60875308
586 bp
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UTR
Exon/CDS
Intron
Rh1CG333800.1

Sequence Viewer

Length: 228 bp
ATGATGGTCGACGCCGTCATCTCCGCCATGGCCGTCGCCGGACACGAGAACATTCCGCTAATCGTGACGGAGACGGGTTGGCCCAGCTCCAGCACCGACCCGAGAGAAGTCGACGCCAACCCGGTTTACGCGGAGCTCTACATCAAGGGGCTATTGGGCCACCTCAGGTCGGGTCGGGGCACGCCGCTCCGAAAAGAAGGGGTGCCTCTGATTACTTGGTCTCTGTAA

Protein Analysis

75

Amino Acids

8.09

Weight (kDa)

5.5

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 2 - 70 9.6e-08 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 187
AccI GTMKAC 2 cut(s) 9, 111
AccII CGCG 1 cut(s) 131
AciI CCGC 4 cut(s) 24, 56, 131, 185
AcoI YGGCCR 1 cut(s) 30
AcyI GRCGYC 2 cut(s) 12, 114
AfiI CCNNNNNNNGG 1 cut(s) 169
AluBI AGCT 2 cut(s) 87, 136
AluI AGCT 2 cut(s) 87, 136
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 3 cut(s) 30, 80, 157
AspS9I GGNCC 2 cut(s) 81, 157
AsuC2I CCSGG 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 182
BanI GGYRCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 138
BauI CACGAG 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 17
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 65
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 81, 157
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 122
BsaHI GRCGYC 2 cut(s) 12, 114
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse21I CCTNAGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 178
BseSI GKGCMC 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 3 cut(s) 32, 82, 159
BshNI GGYRCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 2 cut(s) 39, 122
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 65
BsmBI CGTCTC 1 cut(s) 65
BsnI GGCC 3 cut(s) 32, 82, 159
BsoBI CYCGRG 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 138, 182
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 4 cut(s) 24, 56, 131, 185
BspANI GGCC 3 cut(s) 32, 82, 159
BspCNI CTCAG 1 cut(s) 177
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 202
BsrBI CCGCTC 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 27
BssNI GRCGYC 2 cut(s) 12, 114
BssSI CACGAG 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 44
BstACI GRCGYC 2 cut(s) 12, 114
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 182
BstUI CGCG 1 cut(s) 131
Bsu36I CCTNAGG 1 cut(s) 164
BsuRI GGCC 3 cut(s) 32, 82, 159
BtgI CCRYGG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 81, 157
CseI GACGC 2 cut(s) 20, 122
CviAII CATG 1 cut(s) 28
CviJI RGCY 6 cut(s) 32, 82, 87, 136, 151, 159
CviKI_1 RGCY 6 cut(s) 32, 82, 87, 136, 151, 159
DdeI CTNAG 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 30
EciI GGCGGA 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 136
Eco81I CCTNAGG 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 1 cut(s) 31
FaiI YATR 1 cut(s) 29
FatI CATG 1 cut(s) 27
FblI GTMKAC 2 cut(s) 9, 111
Fnu4HI GCNGC 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 3 cut(s) 32, 82, 159
HapII CCGG 2 cut(s) 39, 122
HgaI GACGC 2 cut(s) 20, 122
Hin1I GRCGYC 2 cut(s) 12, 114
Hin1II CATG 1 cut(s) 31
HincII GTYRAC 2 cut(s) 10, 112
HindII GTYRAC 2 cut(s) 10, 112
HpaII CCGG 2 cut(s) 39, 122
Hpy166II GTNNAC 3 cut(s) 10, 112, 127
Hpy188I TCNGA 2 cut(s) 191, 210
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 3 cut(s) 10, 112, 127
Hpy99I CGWCG 3 cut(s) 14, 38, 116
HpyAV CCTTC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 164
Hsp92I GRCGYC 2 cut(s) 12, 114
Hsp92II CATG 1 cut(s) 31
LmnI GCTCC 3 cut(s) 92, 133, 192
LpnPI CCDG 5 cut(s) 52, 97, 103, 135, 151
MaeIII GTNAC 1 cut(s) 64
MbiI CCGCTC 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 138, 182
MnlI CCTC 2 cut(s) 173, 216
MspI CCGG 2 cut(s) 39, 122
MspR9I CCNGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 131
NciI CCSGG 1 cut(s) 122
NcoI CCATGG 1 cut(s) 27
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 64
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PflFI GACNNNGTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 2 cut(s) 81, 157
PsyI GACNNNGTC 1 cut(s) 14
SacI GAGCTC 1 cut(s) 138
SalI GTCGAC 2 cut(s) 8, 110
SatI GCNGC 1 cut(s) 185
Sau96I GGNCC 2 cut(s) 81, 157
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 2 cut(s) 138, 182
SetI ASST 4 cut(s) 89, 138, 165, 170
SsiI CCGC 4 cut(s) 24, 56, 131, 185
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 27
TaqI TCGA 2 cut(s) 9, 111
TauI GCSGC 1 cut(s) 187
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspGWI ACGGA 1 cut(s) 83
Tth111I GACNNNGTC 1 cut(s) 14
XmiI GTMKAC 2 cut(s) 9, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.