RLG00000027143

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
8975101 .. 8978215
3115 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027143

Sequence Viewer

Length: 990 bp
ATGGGTTCTTGCGGCTGCAGTTCCAGTTCTTCTAGAGTGTTTTCCAGTTCCTCTGTATGGGCAGGTTTCTTTGGCAGAAGATCGAAGATCGATCAAGGAGGTTCAGTCGGATTTAGCTGGGTGCTCAGACGCCCACCAACTTCTCATGTGAACAAGGCATCCAAGGCTGCTTTGATCGCCGCCATCTCCGTCGGCAACGACGTCCTCGAGTCCAAGCCGGAGTTCTCTCAGTTCCTCCTCCCGGCGATCCAGAACGTCCACCTGTCTCTCCTCGACCTCGGGATCCGCAAGATCGCCGTCTCCACCACCTTCTCCTTCGTCAACGTCGTCACGACTCCGTTTCCTCCCTCCGCCGCGCAGTTCCAGGACGCGCCGCTCGAGACGGTGATCAGACCTCTGCTTCAGTTCTTGCGCGACACCAACTCCTCCTTCTTCATCAACGTCTACCCCTACAACATCTACCGGCTCCGGAGCGAGATTCCGATCGGGTTCCCTCTCTTTCAGGAGCACCCGTTCAGTTTCCGAGACGACATGACCACCGGCGTGCGCTACCGGAATCTCTTCGACATGATGGTCGACGCCGTCATCTCCGCCATGGCTGTAGCCGGACACGAGAACATTCCGCTGATCGTGACTGAGACGGGTTGGCCCAGCTCCAGCACCGACCCGAGAGAAGTGGACGCCAACCCGGTTTACGCGGAGCTCTACATTAAGGGGCTATTGGGCCATCTGAGGTCGGGTCGGGGCACGCCGCTCCGAAAAGAAGGGGTGCCTCTGGTATACATCTACGAGCTGATTGATAAGCAAGTGAGGCAGGGACGCAACTGGGGAATTCTGTTTCCGAATATGACCAAGAAGTACAAGAGCATTGACTACAGCTCTGGCTCTGATAGCGTTCTTGGGGGTTTTGGATTCTTGAAGATGGTGGTTGGTCAATTCTTGGTCTTTGCTTTCCTCTTGCGTGGTAATGCTGCTATTTCTCTGCTCTAG

Protein Analysis

330

Amino Acids

36.34

Weight (kDa)

9.41

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 46 - 288 5.2e-38 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 572
AatII GACGTC 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 769
AccBSI CCGCTC 2 cut(s) 376, 754
AccI GTMKAC 3 cut(s) 444, 576, 780
AccII CGCG 4 cut(s) 356, 371, 414, 698
AccIII TCCGGA 1 cut(s) 468
AclWI GGATC 3 cut(s) 241, 277, 290
AcsI RAATTY 1 cut(s) 831
AcuI CTGAAG 1 cut(s) 386
AcyI GRCGYC 4 cut(s) 130, 201, 579, 681
AfaI GTAC 1 cut(s) 860
AfiI CCNNNNNNNGG 2 cut(s) 57, 241
AgsI TTSAA 1 cut(s) 919
AjnI CCWGG 1 cut(s) 363
AjuI GAANNNNNNNTTGG 4 cut(s) 206, 238, 413, 445
AleI CACNNNNGTG 1 cut(s) 542
AloI GAACNNNNNNTCC 4 cut(s) 143, 175, 497, 529
AluBI AGCT 5 cut(s) 117, 654, 703, 793, 879
AluI AGCT 5 cut(s) 117, 654, 703, 793, 879
Alw21I GWGCWC 3 cut(s) 126, 510, 705
Alw26I GTCTC 5 cut(s) 270, 304, 374, 519, 632
AlwI GGATC 3 cut(s) 241, 277, 290
Ama87I CYCGRG 4 cut(s) 206, 278, 377, 667
Aor13HI TCCGGA 1 cut(s) 468
AoxI GGCC 2 cut(s) 647, 724
ApeKI GCWGC 3 cut(s) 15, 167, 971
ApoI RAATTY 1 cut(s) 831
Asp700I GAANNNNTTC 1 cut(s) 560
AspLEI GCGC 4 cut(s) 358, 373, 414, 549
AspS9I GGNCC 2 cut(s) 648, 724
AsuC2I CCSGG 2 cut(s) 242, 689
AsuHPI GGTGA 1 cut(s) 397
AvaI CYCGRG 4 cut(s) 206, 278, 377, 667
BaeGI GKGCMC 1 cut(s) 749
BamHI GGATCC 1 cut(s) 282
BanI GGYRCC 1 cut(s) 769
BanII GRGCYC 1 cut(s) 705
BauI CACGAG 1 cut(s) 611
Bbv12I GWGCWC 3 cut(s) 126, 510, 705
BbvI GCAGC 3 cut(s) 2, 154, 958
BccI CCATC 4 cut(s) 191, 565, 735, 916
BceAI ACGGC 2 cut(s) 281, 566
BciT130I CCWGG 1 cut(s) 365
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 2 cut(s) 242, 689
BcoDI GTCTC 5 cut(s) 270, 304, 374, 519, 632
BfaI CTAG 2 cut(s) 33, 988
BfmI CTRYAG 3 cut(s) 16, 600, 874
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 8 cut(s) 13, 16, 168, 180, 354, 374, 752, 972
BlsI GCNGC 8 cut(s) 14, 17, 169, 181, 355, 375, 753, 973
Bme1390I CCNGG 3 cut(s) 242, 365, 689
BmeT110I CYCGRG 4 cut(s) 206, 278, 377, 667
BmgT120I GGNCC 2 cut(s) 648, 724
BmiI GGNNCC 4 cut(s) 284, 467, 491, 771
BmrFI CCNGG 3 cut(s) 242, 365, 689
BmrI ACTGGG 1 cut(s) 835
BmsI GCATC 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 835
BpmI CTGGAG 1 cut(s) 640
BpuMI CCSGG 2 cut(s) 242, 689
Bsa29I ATCGAT 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 482
BsaHI GRCGYC 4 cut(s) 130, 201, 579, 681
BsaJI CCNNGG 3 cut(s) 162, 277, 594
BsaWI WCCGGW 2 cut(s) 468, 552
BsaXI ACNNNNNCTCC 6 cut(s) 90, 120, 407, 437, 497, 527
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 241
Bse118I RCCGGY 2 cut(s) 462, 539
Bse1I ACTGG 3 cut(s) 24, 45, 830
Bse8I GATNNNNATC 1 cut(s) 482
BseAI TCCGGA 1 cut(s) 468
BseBI CCWGG 1 cut(s) 365
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 162, 277, 594
BseGI GGATG 1 cut(s) 158
BseJI GATNNNNATC 1 cut(s) 482
BseLI CCNNNNNNNGG 2 cut(s) 57, 241
BseMII CTCAG 4 cut(s) 139, 242, 627, 722
BseNI ACTGG 3 cut(s) 24, 45, 830
BseRI GAGGAG 3 cut(s) 227, 260, 415
BseSI GKGCMC 1 cut(s) 749
BseXI GCAGC 3 cut(s) 2, 154, 958
BseYI CCCAGC 2 cut(s) 117, 650
Bsh1236I CGCG 4 cut(s) 356, 371, 414, 698
Bsh1285I CGRYCG 1 cut(s) 486
BshFI GGCC 2 cut(s) 649, 726
BshNI GGYRCC 1 cut(s) 769
BshVI ATCGAT 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 486
BsiHKAI GWGCWC 3 cut(s) 126, 510, 705
BsiHKCI CYCGRG 4 cut(s) 206, 278, 377, 667
BsiSI CCGG 8 cut(s) 218, 242, 463, 469, 540, 553, 606, 689
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 2 cut(s) 57, 241
BsmAI GTCTC 5 cut(s) 270, 304, 374, 519, 632
BsmBI CGTCTC 4 cut(s) 304, 374, 519, 632
BsmFI GGGAC 1 cut(s) 831
BsnI GGCC 2 cut(s) 649, 726
BsoBI CYCGRG 4 cut(s) 206, 278, 377, 667
Bsp1286I GDGCHC 4 cut(s) 126, 510, 705, 749
Bsp13I TCCGGA 1 cut(s) 468
Bsp19I CCATGG 1 cut(s) 594
BspANI GGCC 2 cut(s) 649, 726
BspCNI CTCAG 4 cut(s) 138, 241, 628, 723
BspDI ATCGAT 1 cut(s) 90
BspEI TCCGGA 1 cut(s) 468
BspFNI CGCG 4 cut(s) 356, 371, 414, 698
BspLI GGNNCC 4 cut(s) 284, 467, 491, 771
BspMAI CTGCAG 1 cut(s) 20
BspMI ACCTGC 1 cut(s) 53
BspPI GGATC 3 cut(s) 241, 277, 290
BspT107I GGYRCC 1 cut(s) 769
BsrBI CCGCTC 2 cut(s) 376, 754
BsrFI RCCGGY 2 cut(s) 462, 539
BsrI ACTGG 3 cut(s) 24, 45, 830
BssAI RCCGGY 2 cut(s) 462, 539
BssECI CCNNGG 3 cut(s) 162, 277, 594
BssNAI GTATAC 1 cut(s) 781
BssNI GRCGYC 4 cut(s) 130, 201, 579, 681
BssSI CACGAG 1 cut(s) 611
BssT1I CCWWGG 2 cut(s) 162, 594
Bst1107I GTATAC 1 cut(s) 781
Bst2BI CACGAG 1 cut(s) 611
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 1 cut(s) 566
BstACI GRCGYC 4 cut(s) 130, 201, 579, 681
BstC8I GCNNGC 2 cut(s) 545, 749
BstDEI CTNAG 4 cut(s) 125, 228, 636, 731
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 158
BstFNI CGCG 4 cut(s) 356, 371, 414, 698
BstHHI GCGC 4 cut(s) 358, 373, 414, 549
BstMAI GTCTC 5 cut(s) 270, 304, 374, 519, 632
BstMCI CGRYCG 1 cut(s) 486
BstMWI GCNNNNNNNGC 4 cut(s) 164, 176, 811, 891
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 240, 363, 687
BstSFI CTRYAG 3 cut(s) 16, 600, 874
BstSLI GKGCMC 1 cut(s) 749
BstUI CGCG 4 cut(s) 356, 371, 414, 698
BstV1I GCAGC 3 cut(s) 2, 154, 958
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BstZ17I GTATAC 1 cut(s) 781
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 2 cut(s) 649, 726
BsuTUI ATCGAT 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 158
BveI ACCTGC 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 545, 749
CfoI GCGC 4 cut(s) 358, 373, 414, 549
Cfr10I RCCGGY 2 cut(s) 462, 539
Cfr13I GGNCC 2 cut(s) 648, 724
ClaI ATCGAT 1 cut(s) 90
CseI GACGC 5 cut(s) 138, 377, 587, 689, 828
Csp6I GTAC 1 cut(s) 859
CviAII CATG 4 cut(s) 146, 532, 568, 595
CviQI GTAC 1 cut(s) 859
DdeI CTNAG 4 cut(s) 125, 228, 636, 731
DrdI GACNNNNNNGTC 1 cut(s) 572
DseDI GACNNNNNNGTC 1 cut(s) 572
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
EciI GGCGGA 2 cut(s) 340, 580
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 2 cut(s) 162, 594
Eco24I GRGCYC 1 cut(s) 705
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 386
Eco88I CYCGRG 4 cut(s) 206, 278, 377, 667
EcoICRI GAGCTC 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 831
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 2 cut(s) 162, 594
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 2 cut(s) 162, 594
Esp3I CGTCTC 4 cut(s) 304, 374, 519, 632
FaeI CATG 4 cut(s) 149, 535, 571, 598
FaiI YATR 7 cut(s) 58, 147, 533, 569, 596, 781, 848
FaqI GGGAC 1 cut(s) 831
FatI CATG 4 cut(s) 145, 531, 567, 594
FbaI TGATCA 1 cut(s) 387
FblI GTMKAC 3 cut(s) 444, 576, 780
Fnu4HI GCNGC 8 cut(s) 13, 16, 168, 180, 354, 374, 752, 972
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 8 cut(s) 13, 16, 168, 180, 354, 374, 752, 972
FspBI CTAG 2 cut(s) 33, 988
GlaI GCGC 4 cut(s) 357, 372, 413, 548
GluI GCNGC 8 cut(s) 13, 16, 168, 180, 354, 374, 752, 972
GsaI CCCAGC 2 cut(s) 121, 654
GsuI CTGGAG 1 cut(s) 640
HaeIII GGCC 2 cut(s) 649, 726
HapII CCGG 8 cut(s) 218, 242, 463, 469, 540, 553, 606, 689
HgaI GACGC 5 cut(s) 138, 377, 587, 689, 828
HhaI GCGC 4 cut(s) 358, 373, 414, 549
Hin1I GRCGYC 4 cut(s) 130, 201, 579, 681
Hin1II CATG 4 cut(s) 149, 535, 571, 598
Hin6I GCGC 4 cut(s) 356, 371, 412, 547
HinP1I GCGC 4 cut(s) 356, 371, 412, 547
HincII GTYRAC 2 cut(s) 322, 577
HindII GTYRAC 2 cut(s) 322, 577
HinfI GANTC 5 cut(s) 209, 334, 478, 556, 912
HpaII CCGG 8 cut(s) 218, 242, 463, 469, 540, 553, 606, 689
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 8 cut(s) 151, 259, 322, 445, 577, 679, 694, 781
Hpy188I TCNGA 9 cut(s) 110, 128, 392, 483, 524, 732, 758, 843, 889
Hpy188III TCNNGA 9 cut(s) 33, 250, 280, 331, 379, 469, 503, 631, 916
Hpy8I GTNNAC 8 cut(s) 151, 259, 322, 445, 577, 679, 694, 781
Hpy99I CGWCG 4 cut(s) 194, 203, 329, 581
HpyAV CCTTC 4 cut(s) 319, 325, 439, 758
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 4 cut(s) 201, 255, 324, 441
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 176, 811, 891
HpyF3I CTNAG 4 cut(s) 125, 228, 636, 731
HpySE526I ACGT 4 cut(s) 201, 255, 324, 441
Hsp92I GRCGYC 4 cut(s) 130, 201, 579, 681
Hsp92II CATG 4 cut(s) 149, 535, 571, 598
HspAI GCGC 4 cut(s) 356, 371, 412, 547
Kpn2I TCCGGA 1 cut(s) 468
Ksp22I TGATCA 1 cut(s) 387
LmnI GCTCC 6 cut(s) 471, 471, 505, 659, 700, 759
Lsp1109I GCAGC 3 cut(s) 2, 154, 958
LweI GCATC 1 cut(s) 167
MaeI CTAG 2 cut(s) 33, 988
MaeII ACGT 4 cut(s) 201, 255, 324, 441
MaeIII GTNAC 2 cut(s) 328, 631
MbiI CCGCTC 2 cut(s) 376, 754
MboII GAAGA 6 cut(s) 21, 90, 97, 424, 553, 931
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 4 cut(s) 126, 510, 705, 749
MluCI AATT 2 cut(s) 831, 935
MlyI GAGTC 2 cut(s) 218, 328
MmeI TCCRAC 1 cut(s) 88
MroI TCCGGA 1 cut(s) 468
MroXI GAANNNNTTC 1 cut(s) 560
MseI TTAA 1 cut(s) 711
MslI CAYNNNNRTG 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 625
MspI CCGG 8 cut(s) 218, 242, 463, 469, 540, 553, 606, 689
MspR9I CCNGG 3 cut(s) 242, 365, 689
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 4 cut(s) 356, 371, 414, 698
MwoI GCNNNNNNNGC 4 cut(s) 164, 176, 811, 891
NciI CCSGG 2 cut(s) 242, 689
NcoI CCATGG 1 cut(s) 594
NlaIII CATG 4 cut(s) 149, 535, 571, 598
NlaIV GGNNCC 4 cut(s) 284, 467, 491, 771
NmuCI GTSAC 2 cut(s) 328, 631
OliI CACNNNNGTG 1 cut(s) 542
PaeR7I CTCGAG 2 cut(s) 206, 377
PcsI WCGNNNNNNNCGW 4 cut(s) 198, 204, 324, 375
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 3 cut(s) 478, 556, 912
PflFI GACNNNGTC 1 cut(s) 581
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 8 cut(s) 14, 17, 169, 181, 355, 375, 753, 973
Ple19I CGATCG 1 cut(s) 486
PleI GAGTC 2 cut(s) 217, 328
PpsI GAGTC 2 cut(s) 217, 328
Psp124BI GAGCTC 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 363
PspFI CCCAGC 2 cut(s) 117, 650
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 4 cut(s) 284, 467, 491, 771
PspPI GGNCC 2 cut(s) 648, 724
PspXI VCTCGAGB 1 cut(s) 206
PstI CTGCAG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 282
PsyI GACNNNGTC 1 cut(s) 581
PvuI CGATCG 1 cut(s) 486
RsaI GTAC 1 cut(s) 860
RsaNI GTAC 1 cut(s) 859
RseI CAYNNNNRTG 1 cut(s) 542
SacI GAGCTC 1 cut(s) 705
SalI GTCGAC 1 cut(s) 575
SaqAI TTAA 1 cut(s) 711
SatI GCNGC 8 cut(s) 13, 16, 168, 180, 354, 374, 752, 972
Sau96I GGNCC 2 cut(s) 648, 724
SchI GAGTC 2 cut(s) 218, 328
ScrFI CCNGG 3 cut(s) 242, 365, 689
SduI GDGCHC 4 cut(s) 126, 510, 705, 749
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 3 cut(s) 16, 600, 874
Sfr274I CTCGAG 2 cut(s) 206, 377
SgrAI CRCCGGYG 1 cut(s) 539
SlaI CTCGAG 2 cut(s) 206, 377
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 2 cut(s) 206, 377
SmoI CTYRAG 2 cut(s) 206, 377
Sse9I AATT 2 cut(s) 831, 935
SspMI CTAG 2 cut(s) 33, 988
SstI GAGCTC 1 cut(s) 705
StyD4I CCNGG 3 cut(s) 240, 363, 687
StyI CCWWGG 2 cut(s) 162, 594
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 4 cut(s) 204, 258, 327, 444
TaqI TCGA 7 cut(s) 83, 90, 207, 273, 378, 564, 576
TasI AATT 2 cut(s) 831, 935
TatI WGTACW 1 cut(s) 858
TauI GCSGC 5 cut(s) 15, 182, 356, 376, 754
TfiI GAWTC 3 cut(s) 478, 556, 912
Tru1I TTAA 1 cut(s) 711
Tru9I TTAA 1 cut(s) 711
TseFI GTSAC 2 cut(s) 328, 631
TseI GCWGC 3 cut(s) 15, 167, 971
Tsp45I GTSAC 2 cut(s) 328, 631
TspDTI ATGAA 1 cut(s) 424
TspGWI ACGGA 2 cut(s) 178, 327
Tth111I GACNNNGTC 1 cut(s) 581
XapI RAATTY 1 cut(s) 831
XbaI TCTAGA 1 cut(s) 32
XhoI CTCGAG 2 cut(s) 206, 377
XmiI GTMKAC 3 cut(s) 444, 576, 780
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 2 cut(s) 33, 988
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.